Wall clock time and date at job start Fri Apr 10 2020 14:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.09008 * 109.47017 * 55.00082 * 11 10 9 13 13 N 1.46904 * 109.47449 * 295.00426 * 11 10 9 14 14 C 1.50698 * 109.47721 * 175.00208 * 11 10 9 15 15 O 1.21279 * 120.00178 * 99.99093 * 14 11 10 16 16 N 1.34776 * 119.99790 * 280.00489 * 14 11 10 17 17 C 1.46504 * 119.99805 * 179.97438 * 16 14 11 18 18 C 1.53005 * 109.46974 * 179.97438 * 17 16 14 19 19 H 1.09004 * 109.38028 * 60.22080 * 18 17 16 20 20 C 1.52635 * 109.38348 * 180.02562 * 18 17 16 21 21 S 1.81174 * 109.99448 * 187.01181 * 20 18 17 22 22 C 1.81175 * 103.31298 * 297.38951 * 21 20 18 23 23 C 1.52635 * 109.99602 * 62.61157 * 22 21 20 24 24 S 1.81165 * 109.38551 * 300.53648 * 18 17 16 25 25 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 27 27 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 28 28 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 29 29 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 30 30 H 1.00898 * 110.99372 * 300.00401 * 13 11 10 31 31 H 1.00904 * 110.99944 * 63.94834 * 13 11 10 32 32 H 0.97003 * 120.00282 * 359.97438 * 16 14 11 33 33 H 1.08999 * 109.47420 * 300.00041 * 17 16 14 34 34 H 1.09003 * 109.46804 * 60.00094 * 17 16 14 35 35 H 1.09000 * 109.38772 * 307.17405 * 20 18 17 36 36 H 1.09001 * 109.38363 * 66.85280 * 20 18 17 37 37 H 1.08995 * 109.38291 * 182.77594 * 22 21 20 38 38 H 1.09005 * 109.38418 * 302.56030 * 22 21 20 39 39 H 1.09005 * 109.38061 * 53.30642 * 23 22 21 40 40 H 1.09000 * 109.38714 * 173.09670 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 1 0.7879 -5.0072 -0.8396 13 7 0.7291 -5.1184 1.2575 14 6 2.4549 -6.1299 -0.1220 15 8 2.7872 -6.7532 0.8638 16 7 2.9573 -6.4591 -1.3285 17 6 3.9051 -7.5697 -1.4490 18 6 4.3167 -7.7323 -2.9137 19 1 4.7908 -6.8140 -3.2602 20 6 5.3036 -8.8902 -3.0370 21 16 5.9597 -8.9679 -4.7240 22 6 4.4888 -9.2977 -5.7290 23 6 3.5019 -8.1399 -5.6056 24 16 2.8460 -8.0629 -3.9185 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6247 -2.5564 0.8919 28 1 2.8714 -3.6047 -0.8890 29 1 2.8726 -3.6039 0.8910 30 1 1.3493 -5.1024 2.0533 31 1 0.0243 -4.4003 1.3340 32 1 2.6914 -5.9607 -2.1171 33 1 4.7877 -7.3615 -0.8442 34 1 3.4341 -8.4888 -1.1002 35 1 6.1249 -8.7419 -2.3359 36 1 4.7949 -9.8255 -2.8033 37 1 4.7820 -9.4136 -6.7723 38 1 4.0126 -10.2152 -5.3830 39 1 4.0106 -7.2046 -5.8393 40 1 2.6797 -8.2891 -6.3054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709480577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:21 Heat of formation + Delta-G solvation = -78.758241 kcal Electronic energy + Delta-G solvation = -20285.839206 eV Core-core repulsion = 17157.979708 eV Total energy + Delta-G solvation = -3127.859498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.102 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.95496 -37.48469 -36.77964 -34.83313 -34.56872 -33.39867 -31.68028 -28.86283 -27.27244 -25.30276 -24.83936 -23.22640 -22.38106 -21.08523 -18.94879 -18.45911 -18.07227 -17.71407 -16.99565 -16.70621 -16.46294 -16.00208 -15.81815 -15.48016 -15.20132 -15.04237 -14.67811 -14.63145 -14.32449 -14.12429 -13.99960 -13.71768 -13.53635 -13.39280 -12.92619 -12.69100 -12.62062 -12.51827 -11.81258 -11.78512 -11.72215 -11.31108 -11.29386 -10.81815 -10.65709 -10.55566 -10.15237 -9.64293 -9.06268 -8.76900 -8.20917 -6.31338 0.41511 0.58620 1.26837 1.39935 1.40777 1.45673 1.51295 1.60750 2.11527 2.40446 3.12757 3.41503 3.51373 3.63717 3.76042 3.84577 3.88813 4.01821 4.13289 4.21791 4.25824 4.32954 4.51416 4.55467 4.61824 4.67020 4.73399 4.76094 4.85106 5.09517 5.33860 5.47240 5.66342 5.81280 6.06980 6.21717 6.47184 6.48698 6.84290 7.19145 7.37805 8.89880 Molecular weight = 304.10amu Principal moments of inertia in cm(-1) A = 0.017681 B = 0.002943 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.254017 B = 9510.573089 C =10238.734881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.030 3.970 10 C -0.120 4.120 11 C 0.081 3.919 12 H 0.107 0.893 13 N -0.830 5.830 14 C 0.530 3.470 15 O -0.570 6.570 16 N -0.717 5.717 17 C 0.145 3.855 18 C -0.057 4.057 19 H 0.109 0.891 20 C -0.076 4.076 21 S -0.274 6.274 22 C -0.081 4.081 23 C -0.085 4.085 24 S -0.267 6.267 25 H 0.264 0.736 26 H 0.001 0.999 27 H 0.002 0.998 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.344 0.656 31 H 0.353 0.647 32 H 0.413 0.587 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.135 0.865 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.704 -19.458 -12.971 25.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.159 4.159 11 C -0.035 4.035 12 H 0.125 0.875 13 N -0.362 5.362 14 C 0.316 3.684 15 O -0.449 6.449 16 N -0.371 5.371 17 C 0.019 3.981 18 C -0.188 4.188 19 H 0.128 0.872 20 C -0.227 4.227 21 S -0.045 6.045 22 C -0.231 4.231 23 C -0.234 4.234 24 S -0.040 6.040 25 H 0.073 0.927 26 H 0.020 0.980 27 H 0.021 0.979 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.157 0.843 31 H 0.168 0.832 32 H 0.250 0.750 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.148 0.852 36 H 0.122 0.878 37 H 0.153 0.847 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.583 -20.541 -12.590 25.928 hybrid contribution 0.370 2.231 -0.023 2.261 sum 9.952 -18.310 -12.613 24.360 Atomic orbital electron populations 1.70060 1.07506 1.27760 1.51352 1.25869 0.95726 1.02987 0.94757 0.85538 0.78636 0.78932 0.78497 1.19686 1.20864 1.19186 1.21627 0.93373 0.92444 1.50845 0.92651 1.18968 0.94044 0.92024 0.95704 1.22122 0.98762 0.93626 1.01435 1.21399 0.94791 0.91401 0.95878 0.87549 1.58759 1.18405 1.55672 1.03329 1.20657 0.80807 0.84078 0.82829 1.90622 1.61312 1.54581 1.38338 1.45907 1.46426 1.35111 1.09629 1.21126 0.93502 0.90241 0.93228 1.23522 0.96198 1.02374 0.96703 0.87243 1.23487 1.02244 1.00483 0.96441 1.87049 1.18380 1.94669 1.04414 1.23596 0.94972 1.00801 1.03733 1.23641 1.03076 1.01794 0.94934 1.87362 1.16989 1.94539 1.05072 0.92737 0.98025 0.97941 0.91556 0.93591 0.84290 0.83247 0.74957 0.89495 0.91072 0.85184 0.87763 0.84672 0.88129 0.88279 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.36 13.29 21.45 0.28 -54.07 16 2 C 0.01 0.28 5.46 84.66 0.46 0.75 16 3 Si 0.96 43.25 29.54 68.60 2.03 45.27 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.54 -29.85 9.11 25.60 0.23 -29.62 16 8 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.03 1.46 4.74 29.85 0.14 1.60 16 10 C -0.12 -4.63 4.78 30.59 0.15 -4.49 16 11 C 0.08 2.72 3.21 44.17 0.14 2.86 16 12 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 13 N -0.83 -28.94 8.94 -171.79 -1.54 -30.48 16 14 C 0.53 17.02 7.08 87.66 0.62 17.64 16 15 O -0.57 -21.74 16.25 -3.03 -0.05 -21.79 16 16 N -0.72 -17.47 5.26 -463.04 -2.43 -19.90 16 17 C 0.15 2.87 5.10 86.38 0.44 3.31 16 18 C -0.06 -0.86 2.50 30.47 0.08 -0.78 16 19 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 20 C -0.08 -0.95 5.53 71.86 0.40 -0.56 16 21 S -0.27 -3.76 22.05 -56.49 -1.25 -5.00 16 22 C -0.08 -0.76 6.25 71.86 0.45 -0.31 16 23 C -0.08 -0.89 6.25 71.86 0.45 -0.44 16 24 S -0.27 -4.36 20.56 -56.49 -1.16 -5.52 16 25 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 27 H 0.00 0.12 6.87 -2.39 -0.02 0.10 16 28 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.34 12.16 8.58 -89.70 -0.77 11.39 16 31 H 0.35 12.45 7.55 -89.69 -0.68 11.77 16 32 H 0.41 9.05 7.94 -92.71 -0.74 8.31 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.13 1.39 8.13 -2.39 -0.02 1.37 16 36 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.14 0.80 8.14 -2.40 -0.02 0.78 16 38 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.13 1.03 8.14 -2.40 -0.02 1.01 16 Total: -1.00 -66.55 350.06 -1.68 -68.24 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: -1.12 Total: 33.30 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 3.56 Total: -10.04 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -3.68 Total: -104.45 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.05 Total: -21.79 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -2.41 Total: -10.52 kcal Total: -66.55 -1.68 -68.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709480577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.523 kcal (2) G-P(sol) polarization free energy of solvation -66.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds