Wall clock time and date at job start Fri Apr 10 2020 14:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86803 * 120.00183 * 2 1 4 4 H 1.48501 * 109.46859 * 270.00265 * 3 2 1 5 5 H 1.48492 * 109.47018 * 29.99914 * 3 2 1 6 6 H 1.48501 * 109.46992 * 150.00279 * 3 2 1 7 7 C 1.38641 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00044 * 359.97438 * 7 2 1 9 9 O 1.34814 * 119.99578 * 180.02562 * 7 2 1 10 10 C 1.35784 * 116.99421 * 174.96283 * 9 7 2 11 11 C 1.38908 * 119.99506 * 185.07001 * 10 9 7 12 12 C 1.38006 * 120.00002 * 179.72728 * 11 10 9 13 13 C 1.38916 * 119.99603 * 0.54332 * 12 11 10 14 14 N 1.39991 * 120.00132 * 179.70754 * 13 12 11 15 15 C 1.34773 * 120.00031 * 35.14599 * 14 13 12 16 16 O 1.21293 * 120.00293 * 355.48763 * 15 14 13 17 17 C 1.50701 * 120.00046 * 175.49496 * 15 14 13 18 18 N 1.46497 * 109.47076 * 179.97438 * 17 15 14 19 19 N 1.28946 * 126.47380 * 90.02037 * 18 17 15 20 20 N 1.28580 * 109.63511 * 179.97438 * 19 18 17 21 21 C 1.33387 * 109.88994 * 0.02562 * 20 19 18 22 22 N 1.39631 * 126.25762 * 179.97438 * 21 20 19 23 23 N 1.31687 * 107.48522 * 359.75573 * 21 20 19 24 24 C 1.38920 * 120.00046 * 359.72891 * 13 12 11 25 25 C 1.38009 * 119.99745 * 359.97438 * 24 13 12 26 26 H 0.97002 * 120.00072 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.99863 * 359.97438 * 11 10 9 28 28 H 1.07995 * 120.00005 * 180.27509 * 12 11 10 29 29 H 0.97004 * 119.99938 * 215.14344 * 14 13 12 30 30 H 1.08999 * 109.47108 * 299.99494 * 17 15 14 31 31 H 1.08998 * 109.47454 * 59.99850 * 17 15 14 32 32 H 0.97000 * 119.99726 * 0.02563 * 22 21 20 33 33 H 0.96994 * 119.99989 * 180.02562 * 22 21 20 34 34 H 1.07996 * 120.00395 * 180.02562 * 24 13 12 35 35 H 1.08001 * 120.00126 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4688 -2.1360 -0.0005 9 8 3.3570 -1.2006 0.0000 10 6 3.9733 -2.4059 0.1056 11 6 5.3563 -2.4711 0.2186 12 6 5.9824 -3.6958 0.3317 13 6 5.2304 -4.8638 0.3211 14 7 5.8659 -6.1064 0.4297 15 6 6.9627 -6.2372 1.2019 16 8 7.4472 -5.2627 1.7374 17 6 7.5873 -7.5943 1.4000 18 7 8.7575 -7.4707 2.2727 19 7 8.7676 -7.5624 3.5588 20 7 9.9670 -7.4028 3.9939 21 6 10.7971 -7.1957 2.9706 22 7 12.1744 -6.9816 3.0548 23 7 10.0811 -7.2347 1.8661 24 6 3.8478 -4.7988 0.2025 25 6 3.2213 -3.5737 0.0956 26 1 -0.4850 0.8401 0.0004 27 1 5.9412 -1.5632 0.2220 28 1 7.0572 -3.7463 0.4240 29 1 5.5168 -6.8733 -0.0509 30 1 6.8609 -8.2652 1.8586 31 1 7.8951 -7.9970 0.4350 32 1 12.6121 -6.9750 3.9204 33 1 12.6933 -6.8396 2.2478 34 1 3.2632 -5.7068 0.1947 35 1 2.1465 -3.5231 0.0029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361587191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:10 Heat of formation + Delta-G solvation = 117.136359 kcal Electronic energy + Delta-G solvation = -23107.888760 eV Core-core repulsion = 19339.079475 eV Total energy + Delta-G solvation = -3768.809285 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.107 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.17272 -40.41880 -38.95116 -36.86407 -35.81457 -34.30460 -33.94000 -32.39141 -31.67319 -30.39464 -29.57188 -27.74217 -25.32603 -23.74937 -22.65975 -22.47794 -21.70742 -20.47786 -18.46005 -18.18406 -17.70458 -17.47904 -17.09484 -16.69299 -16.23515 -16.10907 -15.53840 -14.82715 -14.36191 -14.04419 -13.92491 -13.87987 -13.82568 -13.17375 -12.85822 -12.39623 -12.35812 -12.21906 -12.02788 -11.93951 -11.72534 -11.02852 -10.88888 -10.88052 -10.74994 -10.25121 -10.01697 -9.80051 -9.38496 -8.97244 -8.83815 -8.38143 -7.17911 -6.46707 -4.12769 0.85339 1.39451 1.80740 2.02873 2.36343 2.47864 2.79794 3.02115 3.21137 3.23510 3.38974 3.92111 4.20455 4.24361 4.41800 4.42811 4.57931 4.80810 5.06327 5.07289 5.39714 5.44731 5.61618 5.88756 5.90461 6.01271 6.08869 6.55785 6.66043 6.73576 6.78510 6.95560 7.07148 7.14437 7.38490 7.48961 7.71514 7.93684 8.01799 8.22754 8.88270 9.49699 10.60553 Molecular weight = 304.11amu Principal moments of inertia in cm(-1) A = 0.030734 B = 0.002585 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.820947 B =10830.316832 C =11376.367289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.390 4.390 8 H 0.107 0.893 9 O -0.214 6.214 10 C 0.156 3.844 11 C -0.179 4.179 12 C -0.067 4.067 13 C 0.037 3.963 14 N -0.651 5.651 15 C 0.493 3.507 16 O -0.506 6.506 17 C 0.125 3.875 18 N -0.189 5.189 19 N 0.030 4.970 20 N -0.340 5.340 21 C 0.445 3.555 22 N -0.813 5.813 23 N -0.345 5.345 24 C -0.086 4.086 25 C -0.207 4.207 26 H 0.280 0.720 27 H 0.121 0.879 28 H 0.129 0.871 29 H 0.407 0.593 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.420 0.580 33 H 0.418 0.582 34 H 0.116 0.884 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.246 -17.746 0.715 24.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.125 0.875 9 O -0.118 6.118 10 C 0.103 3.897 11 C -0.199 4.199 12 C -0.087 4.087 13 C -0.055 4.055 14 N -0.296 5.296 15 C 0.276 3.724 16 O -0.380 6.380 17 C -0.002 4.002 18 N -0.102 5.102 19 N 0.035 4.965 20 N -0.222 5.222 21 C 0.072 3.928 22 N -0.371 5.371 23 N -0.197 5.197 24 C -0.106 4.106 25 C -0.227 4.227 26 H 0.090 0.910 27 H 0.139 0.861 28 H 0.147 0.853 29 H 0.242 0.758 30 H 0.162 0.838 31 H 0.160 0.840 32 H 0.251 0.749 33 H 0.249 0.751 34 H 0.134 0.866 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 16.818 -16.813 1.234 23.812 hybrid contribution 0.669 0.453 -0.479 0.939 sum 17.487 -16.359 0.756 23.958 Atomic orbital electron populations 1.69647 1.05569 1.28608 1.47651 1.24476 0.95045 0.98910 0.95533 0.86177 0.80400 0.81350 0.79008 1.19826 1.20752 1.18268 1.20769 0.76841 0.96667 1.52309 0.87535 1.83589 1.22663 1.25653 1.79934 1.19171 0.91669 0.85588 0.93294 1.20146 0.91871 0.97711 1.10164 1.20720 0.99627 0.90391 0.97979 1.17235 0.91141 0.83911 1.13248 1.42993 1.28143 1.11624 1.46881 1.20443 0.81734 0.90451 0.79794 1.90815 1.60766 1.39037 1.47340 1.21761 0.84238 0.97715 0.96439 1.52351 1.06287 1.48015 1.03578 1.78329 1.15130 1.08556 0.94461 1.75246 0.94993 1.25942 1.26027 1.21622 0.89284 0.94605 0.87314 1.40918 1.00033 1.83276 1.12917 1.78879 0.88201 1.33310 1.19291 1.20530 0.91599 0.97632 1.00826 1.21105 1.01211 0.91158 1.09238 0.90967 0.86091 0.85306 0.75836 0.83788 0.84039 0.74868 0.75052 0.86635 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.95 13.96 55.48 0.77 -24.18 16 2 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 21.54 28.62 -169.99 -4.86 16.67 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.39 -10.78 9.94 30.88 0.31 -10.47 16 8 H 0.11 2.97 5.43 -52.49 -0.28 2.68 16 9 O -0.21 -5.57 8.58 -0.01 0.00 -5.57 16 10 C 0.16 3.53 6.65 -39.09 -0.26 3.27 16 11 C -0.18 -3.64 9.98 -39.42 -0.39 -4.04 16 12 C -0.07 -1.23 8.69 -39.42 -0.34 -1.57 16 13 C 0.04 0.58 6.30 -83.63 -0.53 0.06 16 14 N -0.65 -7.14 5.34 -9.82 -0.05 -7.19 16 15 C 0.49 5.91 7.74 -10.99 -0.09 5.83 16 16 O -0.51 -8.79 13.87 5.55 0.08 -8.71 16 17 C 0.12 0.94 7.23 -5.19 -0.04 0.90 16 18 N -0.19 -2.25 3.83 -11.66 -0.04 -2.30 16 19 N 0.03 0.41 13.24 60.35 0.80 1.21 16 20 N -0.34 -4.63 12.32 30.03 0.37 -4.26 16 21 C 0.45 5.28 9.63 -320.87 -3.09 2.19 16 22 N -0.81 -5.75 9.13 30.04 0.27 -5.47 16 23 N -0.35 -4.34 12.79 30.03 0.38 -3.96 16 24 C -0.09 -1.41 9.96 -39.41 -0.39 -1.80 16 25 C -0.21 -4.23 9.16 -39.42 -0.36 -4.59 16 26 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 28 H 0.13 2.35 6.23 -52.49 -0.33 2.02 16 29 H 0.41 2.57 8.82 -40.82 -0.36 2.21 16 30 H 0.14 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.14 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.42 2.05 8.96 -40.82 -0.37 1.68 16 33 H 0.42 2.04 8.96 -40.82 -0.37 1.68 16 34 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.14 2.94 5.63 -52.49 -0.30 2.64 16 LS Contribution 318.52 15.07 4.80 4.80 Total: -1.00 -36.60 318.52 -5.59 -42.19 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -2.82 Total: 5.32 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -5.28 Total: -8.55 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 2.50 Total: -46.14 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.08 Total: -14.28 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.86 Total: 16.67 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.60 -5.59 -42.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361587191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.324 kcal (2) G-P(sol) polarization free energy of solvation -36.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds