Wall clock time and date at job start Fri Apr 10 2020 14:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86803 * 120.00183 * 2 1 4 4 H 1.48501 * 109.46859 * 270.00265 * 3 2 1 5 5 H 1.48492 * 109.47018 * 29.99914 * 3 2 1 6 6 H 1.48501 * 109.46992 * 150.00279 * 3 2 1 7 7 C 1.38641 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00044 * 359.97438 * 7 2 1 9 9 O 1.34814 * 119.99578 * 180.02562 * 7 2 1 10 10 C 1.35784 * 116.99421 * 174.96283 * 9 7 2 11 11 C 1.38908 * 119.99506 * 185.07001 * 10 9 7 12 12 C 1.38006 * 120.00002 * 179.72728 * 11 10 9 13 13 C 1.38916 * 119.99603 * 0.54332 * 12 11 10 14 14 N 1.39991 * 120.00132 * 179.70754 * 13 12 11 15 15 C 1.34773 * 120.00031 * 35.14599 * 14 13 12 16 16 O 1.21293 * 120.00293 * 355.48763 * 15 14 13 17 17 C 1.50701 * 120.00046 * 175.49496 * 15 14 13 18 18 N 1.46497 * 109.47076 * 179.97438 * 17 15 14 19 19 N 1.28946 * 126.47380 * 90.02037 * 18 17 15 20 20 N 1.28580 * 109.63511 * 179.97438 * 19 18 17 21 21 C 1.33387 * 109.88994 * 0.02562 * 20 19 18 22 22 N 1.39631 * 126.25762 * 179.97438 * 21 20 19 23 23 N 1.31687 * 107.48522 * 359.75573 * 21 20 19 24 24 C 1.38920 * 120.00046 * 359.72891 * 13 12 11 25 25 C 1.38009 * 119.99745 * 359.97438 * 24 13 12 26 26 H 0.97002 * 120.00072 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.99863 * 359.97438 * 11 10 9 28 28 H 1.07995 * 120.00005 * 180.27509 * 12 11 10 29 29 H 0.97004 * 119.99938 * 215.14344 * 14 13 12 30 30 H 1.08999 * 109.47108 * 299.99494 * 17 15 14 31 31 H 1.08998 * 109.47454 * 59.99850 * 17 15 14 32 32 H 0.97000 * 119.99726 * 0.02563 * 22 21 20 33 33 H 0.96994 * 119.99989 * 180.02562 * 22 21 20 34 34 H 1.07996 * 120.00395 * 180.02562 * 24 13 12 35 35 H 1.08001 * 120.00126 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5473 1.4401 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 1.4688 -2.1360 -0.0005 9 8 3.3570 -1.2006 0.0000 10 6 3.9733 -2.4059 0.1056 11 6 5.3563 -2.4711 0.2186 12 6 5.9824 -3.6958 0.3317 13 6 5.2304 -4.8638 0.3211 14 7 5.8659 -6.1064 0.4297 15 6 6.9627 -6.2372 1.2019 16 8 7.4472 -5.2627 1.7374 17 6 7.5873 -7.5943 1.4000 18 7 8.7575 -7.4707 2.2727 19 7 8.7676 -7.5624 3.5588 20 7 9.9670 -7.4028 3.9939 21 6 10.7971 -7.1957 2.9706 22 7 12.1744 -6.9816 3.0548 23 7 10.0811 -7.2347 1.8661 24 6 3.8478 -4.7988 0.2025 25 6 3.2213 -3.5737 0.0956 26 1 -0.4850 0.8401 0.0004 27 1 5.9412 -1.5632 0.2220 28 1 7.0572 -3.7463 0.4240 29 1 5.5168 -6.8733 -0.0509 30 1 6.8609 -8.2652 1.8586 31 1 7.8951 -7.9970 0.4350 32 1 12.6121 -6.9750 3.9204 33 1 12.6933 -6.8396 2.2478 34 1 3.2632 -5.7068 0.1947 35 1 2.1465 -3.5231 0.0029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361587191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:09 Heat of formation + Delta-G solvation = 88.951680 kcal Electronic energy + Delta-G solvation = -23109.110939 eV Core-core repulsion = 19339.079475 eV Total energy + Delta-G solvation = -3770.031465 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.107 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.04188 -41.62700 -40.52989 -38.36949 -36.60572 -35.57206 -34.79381 -34.36886 -32.48378 -31.93397 -30.66588 -29.00608 -27.16918 -24.76472 -24.00470 -23.50897 -22.97989 -21.72441 -19.92244 -19.39593 -19.11358 -18.70934 -18.08186 -17.61342 -17.21003 -16.97099 -16.67611 -16.43152 -15.80989 -15.69542 -15.35397 -15.19232 -14.92109 -14.49860 -14.23549 -14.17557 -13.78697 -13.48757 -13.28889 -13.03742 -12.83211 -12.78082 -12.53079 -12.02770 -11.79121 -11.78503 -11.48713 -11.21166 -10.95825 -10.68016 -9.90284 -9.69609 -8.73609 -8.50416 -6.21406 -0.05520 0.41347 0.47779 0.68869 1.31185 1.32585 1.42498 1.48541 1.50868 1.94539 2.22772 2.27358 2.74075 3.00479 3.15336 3.22307 3.42411 3.91577 4.01962 4.03798 4.08357 4.38591 4.43975 4.53187 4.61705 4.69685 5.00927 5.11633 5.13702 5.34867 5.44553 5.51367 5.75112 5.87485 6.09433 6.15727 6.37562 6.54780 6.84318 7.05069 7.39920 7.58435 8.60655 Molecular weight = 304.11amu Principal moments of inertia in cm(-1) A = 0.030734 B = 0.002585 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.820947 B =10830.316832 C =11376.367289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.398 4.398 8 H 0.090 0.910 9 O -0.246 6.246 10 C 0.116 3.884 11 C -0.182 4.182 12 C -0.076 4.076 13 C 0.070 3.930 14 N -0.634 5.634 15 C 0.495 3.505 16 O -0.562 6.562 17 C 0.124 3.876 18 N -0.186 5.186 19 N 0.012 4.988 20 N -0.365 5.365 21 C 0.436 3.564 22 N -0.794 5.794 23 N -0.363 5.363 24 C -0.075 4.075 25 C -0.216 4.216 26 H 0.285 0.715 27 H 0.122 0.878 28 H 0.132 0.868 29 H 0.435 0.565 30 H 0.190 0.810 31 H 0.187 0.813 32 H 0.430 0.570 33 H 0.429 0.571 34 H 0.163 0.837 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.092 -20.559 0.347 28.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.474 4.474 8 H 0.107 0.893 9 O -0.153 6.153 10 C 0.066 3.934 11 C -0.202 4.202 12 C -0.096 4.096 13 C -0.024 4.024 14 N -0.282 5.282 15 C 0.281 3.719 16 O -0.439 6.439 17 C 0.000 4.000 18 N -0.101 5.101 19 N 0.017 4.983 20 N -0.248 5.248 21 C 0.062 3.938 22 N -0.355 5.355 23 N -0.216 5.216 24 C -0.095 4.095 25 C -0.235 4.235 26 H 0.094 0.906 27 H 0.140 0.860 28 H 0.150 0.850 29 H 0.276 0.724 30 H 0.207 0.793 31 H 0.205 0.795 32 H 0.263 0.737 33 H 0.262 0.738 34 H 0.180 0.820 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 18.710 -19.712 0.848 27.191 hybrid contribution 0.348 0.973 -0.346 1.089 sum 19.058 -18.739 0.502 26.732 Atomic orbital electron populations 1.69718 1.06680 1.29532 1.50099 1.25207 0.95846 1.01922 0.95676 0.85295 0.78717 0.77937 0.79281 1.18966 1.19289 1.19236 1.20754 0.77923 0.96329 1.52371 0.89306 1.83535 1.21472 1.27404 1.82890 1.19619 0.92677 0.85580 0.95500 1.20300 0.91070 0.98953 1.09890 1.20869 0.99985 0.90597 0.98141 1.17323 0.91066 0.85376 1.08647 1.42860 1.27692 1.10649 1.47029 1.21242 0.80827 0.91620 0.78213 1.90815 1.62248 1.41448 1.49388 1.22286 0.83957 0.95064 0.98681 1.52681 1.06958 1.46948 1.03489 1.78243 1.15351 1.09259 0.95406 1.75195 0.95450 1.27095 1.27029 1.22011 0.90607 0.94295 0.86840 1.41004 0.98435 1.81916 1.14194 1.78808 0.88758 1.34220 1.19766 1.20863 0.92043 0.97722 0.98852 1.21192 1.00652 0.92242 1.09434 0.90582 0.86035 0.84978 0.72412 0.79282 0.79540 0.73662 0.73751 0.81952 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.22 13.96 21.61 0.30 -53.91 16 2 C 0.01 0.70 5.49 84.83 0.47 1.17 16 3 Si 0.96 45.70 28.62 68.60 1.96 47.66 16 4 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.40 -23.01 9.94 67.92 0.68 -22.34 16 8 H 0.09 5.25 5.43 -2.91 -0.02 5.24 16 9 O -0.25 -13.33 8.58 -22.96 -0.20 -13.53 16 10 C 0.12 5.38 6.65 22.59 0.15 5.53 16 11 C -0.18 -7.48 9.98 22.38 0.22 -7.25 16 12 C -0.08 -2.67 8.69 22.38 0.19 -2.47 16 13 C 0.07 1.99 6.30 38.16 0.24 2.23 16 14 N -0.63 -10.84 5.34 -303.38 -1.62 -12.46 16 15 C 0.50 9.91 7.74 87.66 0.68 10.58 16 16 O -0.56 -18.27 13.87 -3.07 -0.04 -18.31 16 17 C 0.12 1.24 7.23 85.63 0.62 1.86 16 18 N -0.19 -3.86 3.83 -190.80 -0.73 -4.59 16 19 N 0.01 0.31 13.24 37.02 0.49 0.80 16 20 N -0.37 -9.49 12.32 -58.92 -0.73 -10.21 16 21 C 0.44 9.61 9.63 260.81 2.51 12.13 16 22 N -0.79 -9.82 9.13 -58.87 -0.54 -10.36 16 23 N -0.36 -8.27 12.79 -58.90 -0.75 -9.02 16 24 C -0.08 -2.23 9.96 22.38 0.22 -2.01 16 25 C -0.22 -8.80 9.16 22.38 0.20 -8.59 16 26 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 27 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 28 H 0.13 4.64 6.23 -2.91 -0.02 4.62 16 29 H 0.44 2.74 8.82 -92.71 -0.82 1.92 16 30 H 0.19 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.19 0.25 8.14 -2.39 -0.02 0.24 16 32 H 0.43 3.47 8.96 -92.71 -0.83 2.64 16 33 H 0.43 3.33 8.96 -92.71 -0.83 2.50 16 34 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.12 5.42 5.63 -2.91 -0.02 5.40 16 Total: -1.00 -85.30 318.52 3.07 -82.23 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -1.26 Total: 10.86 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 6.19 Total: -9.16 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -3.58 Total: -99.75 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.24 Total: -31.84 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.96 Total: 47.66 kcal Total: -85.30 3.07 -82.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361587191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.186 kcal (2) G-P(sol) polarization free energy of solvation -85.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds