Wall clock time and date at job start Fri Apr 10 2020 14:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 119.99568 * 2 1 4 4 H 1.48505 * 109.47043 * 270.00178 * 3 2 1 5 5 H 1.48498 * 109.47350 * 29.99863 * 3 2 1 6 6 H 1.48495 * 109.47233 * 150.00241 * 3 2 1 7 7 C 1.38807 * 120.00378 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99908 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99576 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99308 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46666 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47397 * 59.99682 * 11 10 9 13 13 O 1.42906 * 109.46785 * 299.99613 * 11 10 9 14 14 C 1.53001 * 109.46981 * 180.02562 * 11 10 9 15 15 N 1.46502 * 109.47190 * 184.99796 * 14 11 10 16 16 C 1.34768 * 119.99939 * 179.97438 * 15 14 11 17 17 O 1.21570 * 120.00593 * 0.02562 * 16 15 14 18 18 C 1.47716 * 119.99949 * 179.97438 * 16 15 14 19 19 C 1.41500 * 126.51849 * 180.02562 * 18 16 15 20 20 C 1.35365 * 105.50092 * 180.02562 * 19 18 16 21 21 C 1.50703 * 126.38354 * 180.02562 * 20 19 18 22 22 F 1.39905 * 109.47157 * 149.99732 * 21 20 19 23 23 F 1.39900 * 109.47159 * 30.00033 * 21 20 19 24 24 N 1.35035 * 107.23026 * 0.25796 * 20 19 18 25 25 H 0.97000 * 124.88236 * 179.70468 * 24 20 19 26 26 N 1.28466 * 110.22995 * 359.55390 * 24 20 19 27 27 H 0.97000 * 120.00094 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00383 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.47472 * 59.99649 * 10 9 7 30 30 H 1.08996 * 109.46924 * 299.99084 * 10 9 7 31 31 H 0.96705 * 114.00342 * 300.00189 * 13 11 10 32 32 H 1.09001 * 109.47473 * 64.99792 * 14 11 10 33 33 H 1.09001 * 109.46955 * 304.99732 * 14 11 10 34 34 H 0.97001 * 119.99396 * 359.97438 * 15 14 11 35 35 H 1.07991 * 127.24932 * 0.02562 * 19 18 16 36 36 H 1.09004 * 109.47113 * 269.99831 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0584 -3.6567 0.0005 11 6 1.0641 -4.8197 0.0012 12 1 0.4371 -4.7622 -0.8885 13 8 0.2431 -4.7437 1.1684 14 6 1.8292 -6.1447 0.0018 15 7 0.8818 -7.2557 -0.1179 16 6 1.3320 -8.5258 -0.1392 17 8 2.5242 -8.7497 -0.0587 18 6 0.3767 -9.6460 -0.2594 19 6 0.6953 -11.0243 -0.2947 20 6 -0.4903 -11.6668 -0.4122 21 6 -0.6951 -13.1577 -0.4915 22 9 -1.9367 -13.4880 0.0621 23 9 0.3200 -13.8064 0.2198 24 7 -1.4549 -10.7225 -0.4503 25 1 -2.4043 -10.9025 -0.5354 26 7 -0.9346 -9.5519 -0.3545 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3881 0.0005 29 1 2.6851 -3.7144 0.8905 30 1 2.6849 -3.7144 -0.8895 31 1 0.7356 -4.7889 1.9994 32 1 2.3871 -6.2417 0.9332 33 1 2.5213 -6.1650 -0.8401 34 1 -0.0695 -7.0771 -0.1818 35 1 1.6776 -11.4697 -0.2396 36 1 -0.6668 -13.4734 -1.5345 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497053603.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:02 Heat of formation + Delta-G solvation = -101.046315 kcal Electronic energy + Delta-G solvation = -23564.529837 eV Core-core repulsion = 19335.570255 eV Total energy + Delta-G solvation = -4228.959582 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.113 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.70660 -47.73302 -43.24259 -39.58138 -37.58583 -34.46452 -33.99256 -32.60325 -32.36716 -31.26778 -29.15532 -26.81825 -25.87539 -23.97802 -22.37557 -21.94589 -21.41634 -20.18010 -19.37484 -18.28340 -17.71919 -17.57331 -17.12296 -16.59713 -16.27262 -15.81614 -15.66316 -15.26127 -14.56891 -14.54569 -14.44524 -14.27869 -14.03864 -13.91622 -13.60992 -13.47936 -12.98728 -12.67150 -12.34761 -12.19375 -11.85642 -11.48784 -10.95658 -10.82075 -10.63772 -10.40362 -10.16608 -10.00666 -9.83797 -9.81250 -9.51499 -9.14454 -8.90163 -6.93698 -5.75882 -3.05674 1.01371 1.39505 2.06499 2.77586 3.14960 3.16834 3.43623 3.43944 3.48951 3.50836 3.80025 4.06816 4.15672 4.54270 4.70447 4.77881 4.85542 4.92351 5.18099 5.25054 5.55674 5.61170 5.71006 5.79779 5.95036 6.18959 6.24530 6.34055 6.51017 6.67809 7.11999 7.46316 7.68657 7.95390 8.05306 8.42295 9.53938 10.10650 10.46511 11.46407 Molecular weight = 304.11amu Principal moments of inertia in cm(-1) A = 0.047759 B = 0.002087 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.139176 B =13413.382881 C =13849.245440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.105 0.895 13 O -0.551 6.551 14 C 0.089 3.911 15 N -0.705 5.705 16 C 0.600 3.400 17 O -0.532 6.532 18 C -0.009 4.009 19 C -0.127 4.127 20 C -0.078 4.078 21 C 0.353 3.647 22 F -0.198 7.198 23 F -0.183 7.183 24 N -0.358 5.358 25 H 0.452 0.548 26 N -0.228 5.228 27 H 0.255 0.745 28 H 0.389 0.611 29 H 0.024 0.976 30 H 0.029 0.971 31 H 0.374 0.626 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.412 0.588 35 H 0.174 0.826 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.542 -29.047 -2.271 29.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.371 5.371 10 C -0.002 4.002 11 C 0.029 3.971 12 H 0.123 0.877 13 O -0.356 6.356 14 C -0.035 4.035 15 N -0.356 5.356 16 C 0.384 3.616 17 O -0.407 6.407 18 C -0.169 4.169 19 C -0.155 4.155 20 C -0.204 4.204 21 C 0.297 3.703 22 F -0.179 7.179 23 F -0.164 7.164 24 N -0.074 5.074 25 H 0.298 0.702 26 N -0.066 5.066 27 H 0.065 0.935 28 H 0.224 0.776 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.221 0.779 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.248 0.752 35 H 0.191 0.809 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.830 -28.237 -2.642 28.618 hybrid contribution 0.237 0.247 0.441 0.559 sum -3.594 -27.989 -2.200 28.305 Atomic orbital electron populations 1.69684 1.05103 1.25668 1.57358 1.24770 0.95542 0.97745 1.02875 0.86174 0.78627 0.83754 0.77513 1.21698 1.21747 1.20746 1.19220 0.91004 0.84091 1.43126 0.91185 1.42236 1.06142 0.99355 1.89354 1.21197 0.93490 0.86579 0.98943 1.22395 0.93314 0.91627 0.89766 0.87728 1.86589 1.36963 1.96396 1.15680 1.22205 0.92265 0.85717 1.03330 1.45781 1.11876 1.04897 1.73068 1.16773 0.86399 0.81471 0.76982 1.90823 1.15140 1.84324 1.50378 1.22071 0.90055 0.94916 1.09824 1.21587 0.98577 0.91579 1.03781 1.21843 0.90981 0.92981 1.14578 1.19675 0.71715 0.84414 0.94481 1.93038 1.43301 1.93384 1.88224 1.93072 1.60011 1.81895 1.81422 1.43160 1.10295 1.02019 1.51937 0.70238 1.73687 1.10412 1.05721 1.16740 0.93482 0.77626 0.95861 0.95301 0.77909 0.90658 0.90032 0.75245 0.80873 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.36 5.49 -59.90 -0.33 -18.69 16 10 C 0.13 2.43 5.92 -4.04 -0.02 2.41 16 11 C 0.09 1.36 3.09 -26.73 -0.08 1.28 16 12 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 13 O -0.55 -8.86 13.03 -35.23 -0.46 -9.32 16 14 C 0.09 1.16 5.31 -4.04 -0.02 1.14 16 15 N -0.70 -8.79 5.50 -61.29 -0.34 -9.12 16 16 C 0.60 8.05 7.82 -12.39 -0.10 7.95 16 17 O -0.53 -8.58 16.93 5.30 0.09 -8.49 16 18 C -0.01 -0.10 7.13 -82.76 -0.59 -0.69 16 19 C -0.13 -1.17 10.41 -39.36 -0.41 -1.58 16 20 C -0.08 -0.53 6.84 -82.21 -0.56 -1.09 16 21 C 0.35 1.55 5.83 36.01 0.21 1.76 16 22 F -0.20 -1.09 17.30 2.25 0.04 -1.05 16 23 F -0.18 -1.22 17.06 2.25 0.04 -1.18 16 24 N -0.36 -2.42 6.80 33.50 0.23 -2.19 16 25 H 0.45 1.56 8.96 -190.44 -1.71 -0.14 16 26 N -0.23 -2.26 11.92 33.42 0.40 -1.86 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.39 10.56 7.54 -40.82 -0.31 10.26 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.37 5.02 9.05 45.56 0.41 5.44 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.41 4.85 8.20 -40.82 -0.33 4.52 16 35 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.14 0.08 8.14 -51.93 -0.42 -0.34 16 LS Contribution 332.60 15.07 5.01 5.01 Total: -1.00 -35.49 332.60 -5.88 -41.38 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -4.44 Total: 12.04 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -1.82 Total: 3.72 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.68 Total: -59.58 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.37 Total: -17.81 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.08 Total: -2.24 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.49 -5.88 -41.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497053603.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.668 kcal (2) G-P(sol) polarization free energy of solvation -35.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds