Wall clock time and date at job start Fri Apr 10 2020 14:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 119.99568 * 2 1 4 4 H 1.48505 * 109.47043 * 270.00178 * 3 2 1 5 5 H 1.48498 * 109.47350 * 29.99863 * 3 2 1 6 6 H 1.48495 * 109.47233 * 150.00241 * 3 2 1 7 7 C 1.38807 * 120.00378 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99908 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99576 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99308 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46666 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47397 * 59.99682 * 11 10 9 13 13 O 1.42906 * 109.46785 * 299.99613 * 11 10 9 14 14 C 1.53001 * 109.46981 * 180.02562 * 11 10 9 15 15 N 1.46502 * 109.47190 * 184.99796 * 14 11 10 16 16 C 1.34768 * 119.99939 * 179.97438 * 15 14 11 17 17 O 1.21570 * 120.00593 * 0.02562 * 16 15 14 18 18 C 1.47716 * 119.99949 * 179.97438 * 16 15 14 19 19 C 1.41500 * 126.51849 * 180.02562 * 18 16 15 20 20 C 1.35365 * 105.50092 * 180.02562 * 19 18 16 21 21 C 1.50703 * 126.38354 * 180.02562 * 20 19 18 22 22 F 1.39905 * 109.47157 * 149.99732 * 21 20 19 23 23 F 1.39900 * 109.47159 * 30.00033 * 21 20 19 24 24 N 1.35035 * 107.23026 * 0.25796 * 20 19 18 25 25 H 0.97000 * 124.88236 * 179.70468 * 24 20 19 26 26 N 1.28466 * 110.22995 * 359.55390 * 24 20 19 27 27 H 0.97000 * 120.00094 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00383 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.47472 * 59.99649 * 10 9 7 30 30 H 1.08996 * 109.46924 * 299.99084 * 10 9 7 31 31 H 0.96705 * 114.00342 * 300.00189 * 13 11 10 32 32 H 1.09001 * 109.47473 * 64.99792 * 14 11 10 33 33 H 1.09001 * 109.46955 * 304.99732 * 14 11 10 34 34 H 0.97001 * 119.99396 * 359.97438 * 15 14 11 35 35 H 1.07991 * 127.24932 * 0.02562 * 19 18 16 36 36 H 1.09004 * 109.47113 * 269.99831 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0584 -3.6567 0.0005 11 6 1.0641 -4.8197 0.0012 12 1 0.4371 -4.7622 -0.8885 13 8 0.2431 -4.7437 1.1684 14 6 1.8292 -6.1447 0.0018 15 7 0.8818 -7.2557 -0.1179 16 6 1.3320 -8.5258 -0.1392 17 8 2.5242 -8.7497 -0.0587 18 6 0.3767 -9.6460 -0.2594 19 6 0.6953 -11.0243 -0.2947 20 6 -0.4903 -11.6668 -0.4122 21 6 -0.6951 -13.1577 -0.4915 22 9 -1.9367 -13.4880 0.0621 23 9 0.3200 -13.8064 0.2198 24 7 -1.4549 -10.7225 -0.4503 25 1 -2.4043 -10.9025 -0.5354 26 7 -0.9346 -9.5519 -0.3545 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3881 0.0005 29 1 2.6851 -3.7144 0.8905 30 1 2.6849 -3.7144 -0.8895 31 1 0.7356 -4.7889 1.9994 32 1 2.3871 -6.2417 0.9332 33 1 2.5213 -6.1650 -0.8401 34 1 -0.0695 -7.0771 -0.1818 35 1 1.6776 -11.4697 -0.2396 36 1 -0.6668 -13.4734 -1.5345 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497053603.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:02 Heat of formation + Delta-G solvation = -131.703855 kcal Electronic energy + Delta-G solvation = -23565.859248 eV Core-core repulsion = 19335.570255 eV Total energy + Delta-G solvation = -4230.288993 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.10893 -48.14679 -43.91896 -40.66108 -38.90843 -36.08071 -35.38674 -33.39615 -33.08868 -32.99965 -30.61151 -27.51664 -27.15788 -25.35843 -23.86179 -22.77296 -22.56594 -21.16122 -19.94614 -19.23393 -18.64794 -18.42677 -18.12599 -17.76676 -17.27395 -16.76927 -16.52561 -16.39960 -16.33698 -15.61280 -15.45720 -15.01700 -14.98064 -14.85978 -14.65788 -14.47047 -14.17763 -13.95755 -13.85131 -13.25485 -12.95183 -12.74753 -12.67202 -12.16248 -12.14420 -11.97678 -11.80508 -11.52046 -10.99709 -10.90891 -10.75063 -10.47711 -10.18023 -9.00472 -7.94281 -5.23870 0.28339 0.66745 1.48085 1.50018 1.51310 1.58528 1.94702 2.19568 2.55412 2.62444 3.11588 3.12716 3.36959 3.46296 3.52668 3.59973 3.90412 4.00722 4.07592 4.20082 4.21108 4.42014 4.51972 4.62439 4.71610 4.94828 5.03547 5.19818 5.27127 5.48955 5.74831 6.26624 6.29963 6.59934 6.80090 7.03209 7.33947 8.09586 8.32572 9.28972 Molecular weight = 304.11amu Principal moments of inertia in cm(-1) A = 0.047759 B = 0.002087 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.139176 B =13413.382881 C =13849.245440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.078 4.078 3 Si 0.976 3.024 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.247 4.247 8 H 0.078 0.922 9 N -0.740 5.740 10 C 0.122 3.878 11 C 0.107 3.893 12 H 0.100 0.900 13 O -0.564 6.564 14 C 0.101 3.899 15 N -0.699 5.699 16 C 0.601 3.399 17 O -0.565 6.565 18 C -0.034 4.034 19 C -0.145 4.145 20 C -0.059 4.059 21 C 0.355 3.645 22 F -0.203 7.203 23 F -0.196 7.196 24 N -0.340 5.340 25 H 0.467 0.533 26 N -0.240 5.240 27 H 0.251 0.749 28 H 0.377 0.623 29 H 0.033 0.967 30 H 0.036 0.964 31 H 0.385 0.615 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.416 0.584 35 H 0.176 0.824 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 -30.541 -2.604 30.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.270 4.270 3 Si 0.805 3.195 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.379 4.379 8 H 0.096 0.904 9 N -0.384 5.384 10 C -0.005 4.005 11 C 0.047 3.953 12 H 0.118 0.882 13 O -0.371 6.371 14 C -0.024 4.024 15 N -0.350 5.350 16 C 0.386 3.614 17 O -0.443 6.443 18 C -0.192 4.192 19 C -0.173 4.173 20 C -0.187 4.187 21 C 0.300 3.700 22 F -0.184 7.184 23 F -0.177 7.177 24 N -0.059 5.059 25 H 0.316 0.684 26 N -0.078 5.078 27 H 0.060 0.940 28 H 0.209 0.791 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.234 0.766 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.252 0.748 35 H 0.194 0.806 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.722 -29.764 -2.969 30.143 hybrid contribution 0.172 0.594 0.555 0.831 sum -3.550 -29.170 -2.414 29.484 Atomic orbital electron populations 1.69844 1.06674 1.26073 1.59331 1.25620 0.96422 1.01264 1.03679 0.85109 0.77674 0.79320 0.77446 1.21350 1.22263 1.19337 1.19656 0.91559 0.85295 1.41367 0.90448 1.42426 1.05799 1.00769 1.89370 1.21405 0.94162 0.85584 0.99363 1.22112 0.92316 0.91293 0.89550 0.88174 1.86567 1.37659 1.96405 1.16435 1.21986 0.91935 0.84694 1.03744 1.45697 1.11921 1.04651 1.72760 1.17029 0.86368 0.81930 0.76117 1.90794 1.16572 1.84841 1.52060 1.21833 0.90368 0.94991 1.12050 1.21713 0.99750 0.90988 1.04817 1.22158 0.89991 0.94245 1.12286 1.20163 0.70934 0.82486 0.96388 1.93033 1.43599 1.93224 1.88557 1.93050 1.60711 1.81932 1.82030 1.43239 1.11178 1.01316 1.50204 0.68395 1.73624 1.09882 1.07122 1.17212 0.94022 0.79102 0.94913 0.94570 0.76604 0.90196 0.89740 0.74769 0.80623 0.79774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.03 13.06 21.65 0.28 -59.75 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 3 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 4 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.74 -37.46 5.49 -343.44 -1.89 -39.34 16 10 C 0.12 4.60 5.92 86.38 0.51 5.11 16 11 C 0.11 3.21 3.09 30.60 0.09 3.31 16 12 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 13 O -0.56 -17.79 13.03 -148.98 -1.94 -19.74 16 14 C 0.10 2.55 5.31 86.38 0.46 3.01 16 15 N -0.70 -17.07 5.50 -466.10 -2.56 -19.64 16 16 C 0.60 16.00 7.82 86.75 0.68 16.68 16 17 O -0.57 -18.30 16.93 -3.94 -0.07 -18.36 16 18 C -0.03 -0.74 7.13 42.46 0.30 -0.44 16 19 C -0.14 -2.52 10.41 22.41 0.23 -2.29 16 20 C -0.06 -0.68 6.84 41.40 0.28 -0.40 16 21 C 0.36 2.10 5.83 71.24 0.42 2.51 16 22 F -0.20 -1.69 17.30 44.97 0.78 -0.91 16 23 F -0.20 -2.22 17.06 44.97 0.77 -1.46 16 24 N -0.34 -3.94 6.80 -47.93 -0.33 -4.26 16 25 H 0.47 2.12 8.96 -219.99 -1.97 0.15 16 26 N -0.24 -4.47 11.92 -48.17 -0.57 -5.04 16 27 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 28 H 0.38 20.71 7.54 -92.71 -0.70 20.01 16 29 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.39 10.04 9.05 -74.05 -0.67 9.37 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.42 9.56 8.20 -92.71 -0.76 8.80 16 35 H 0.18 2.86 8.06 -2.92 -0.02 2.83 16 36 H 0.19 -0.57 8.14 -2.38 -0.02 -0.59 16 Total: -1.00 -76.30 332.60 -2.13 -78.43 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: -2.91 Total: 31.25 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 4.28 Total: 10.49 kcal Atomic # 7 Polarization: -122.97 SS G_CDS: -5.07 Total: -128.04 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -2.01 Total: -38.10 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 1.54 Total: -2.36 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -76.30 -2.13 -78.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497053603.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.275 kcal (2) G-P(sol) polarization free energy of solvation -76.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds