Wall clock time and date at job start Fri Apr 10 2020 14:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00260 * 2 1 4 4 H 1.48498 * 109.46910 * 269.99466 * 3 2 1 5 5 H 1.48500 * 109.47076 * 29.99662 * 3 2 1 6 6 H 1.48496 * 109.47174 * 149.99903 * 3 2 1 7 7 C 1.38819 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99625 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00022 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47269 * 305.00317 * 11 10 9 13 13 O 1.42903 * 109.46459 * 65.00211 * 11 10 9 14 14 C 1.53001 * 109.47376 * 185.00021 * 11 10 9 15 15 N 1.46497 * 109.46900 * 180.02562 * 14 11 10 16 16 C 1.34783 * 119.99638 * 180.02562 * 15 14 11 17 17 O 1.21563 * 119.99782 * 0.02562 * 16 15 14 18 18 C 1.47710 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.41503 * 126.52030 * 179.97438 * 18 16 15 20 20 C 1.35356 * 105.50587 * 180.02562 * 19 18 16 21 21 C 1.50705 * 126.38506 * 180.02562 * 20 19 18 22 22 F 1.39895 * 109.46891 * 299.99664 * 21 20 19 23 23 F 1.39900 * 109.47148 * 60.00088 * 21 20 19 24 24 N 1.35034 * 107.22822 * 359.97438 * 20 19 18 25 25 H 0.97004 * 124.88545 * 179.97438 * 24 20 19 26 26 N 1.28463 * 110.23108 * 359.72745 * 24 20 19 27 27 H 0.96997 * 120.00150 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99589 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.47040 * 60.00172 * 10 9 7 30 30 H 1.08999 * 109.47079 * 299.99874 * 10 9 7 31 31 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 32 32 H 1.08999 * 109.47164 * 300.00361 * 14 11 10 33 33 H 1.08997 * 109.47124 * 60.00063 * 14 11 10 34 34 H 0.96996 * 120.00310 * 359.97438 * 15 14 11 35 35 H 1.08001 * 127.24180 * 0.02562 * 19 18 16 36 36 H 1.09002 * 109.46686 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8198 0.0012 12 1 0.3799 -4.7127 0.8432 13 8 0.3210 -4.8120 -1.2197 14 6 1.8246 -6.1412 0.1269 15 7 0.8725 -7.2547 0.1269 16 6 1.3184 -8.5225 0.2292 17 8 2.5105 -8.7419 0.3219 18 6 0.3585 -9.6452 0.2297 19 6 0.6723 -11.0214 0.3289 20 6 -0.5163 -11.6676 0.2866 21 6 -0.7266 -13.1582 0.3580 22 9 -0.0642 -13.7741 -0.7092 23 9 -0.2160 -13.6438 1.5666 24 7 -1.4786 -10.7275 0.1697 25 1 -2.4297 -10.9108 0.1166 26 7 -0.9537 -9.5553 0.1440 27 1 -0.4850 0.8400 -0.0004 28 1 0.3555 -2.3881 0.0005 29 1 2.6846 -3.7146 0.8906 30 1 2.6846 -3.7146 -0.8895 31 1 0.8668 -4.9036 -2.0127 32 1 2.5084 -6.2483 -0.7151 33 1 2.3911 -6.1471 1.0580 34 1 -0.0787 -7.0795 0.0541 35 1 1.6537 -11.4631 0.4193 36 1 -1.7926 -13.3779 0.2990 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497053605.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:04 Heat of formation + Delta-G solvation = -99.262653 kcal Electronic energy + Delta-G solvation = -23566.356249 eV Core-core repulsion = 19337.474012 eV Total energy + Delta-G solvation = -4228.882237 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.113 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.63348 -47.63963 -43.27098 -39.58680 -37.59406 -34.45475 -34.01089 -32.70312 -32.30066 -31.28716 -29.17167 -26.82656 -25.87033 -24.02842 -22.38878 -21.93457 -21.42548 -20.25363 -19.35546 -17.94448 -17.84807 -17.61210 -17.13309 -16.59871 -16.28625 -15.81244 -15.65118 -15.28103 -14.58860 -14.47657 -14.40788 -14.30543 -13.98341 -13.88058 -13.59273 -13.49400 -12.98296 -12.69273 -12.33871 -12.02367 -11.86073 -11.53979 -10.96746 -10.81822 -10.63919 -10.40094 -10.17593 -10.05541 -9.87579 -9.81358 -9.52553 -9.14147 -8.90415 -6.94119 -5.76263 -3.05933 0.98416 1.39764 1.99133 2.81236 3.14726 3.20281 3.38316 3.43924 3.48916 3.50732 3.76243 4.02594 4.28799 4.54600 4.68725 4.76857 4.84536 4.91905 5.17638 5.24056 5.55626 5.62273 5.70380 5.79921 5.94839 6.18352 6.21263 6.33748 6.51264 6.67399 7.09439 7.46233 7.68577 7.93416 8.05675 8.41855 9.53484 10.10052 10.45651 11.46122 Molecular weight = 304.11amu Principal moments of inertia in cm(-1) A = 0.048973 B = 0.002081 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.603777 B =13450.801131 C =13736.373778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.106 0.894 13 O -0.552 6.552 14 C 0.089 3.911 15 N -0.705 5.705 16 C 0.600 3.400 17 O -0.531 6.531 18 C -0.008 4.008 19 C -0.119 4.119 20 C -0.082 4.082 21 C 0.354 3.646 22 F -0.186 7.186 23 F -0.186 7.186 24 N -0.359 5.359 25 H 0.450 0.550 26 N -0.226 5.226 27 H 0.255 0.745 28 H 0.388 0.612 29 H 0.029 0.971 30 H 0.024 0.976 31 H 0.373 0.627 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.412 0.588 35 H 0.172 0.828 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.115 -28.890 0.114 29.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.371 5.371 10 C -0.001 4.001 11 C 0.029 3.971 12 H 0.124 0.876 13 O -0.357 6.357 14 C -0.036 4.036 15 N -0.356 5.356 16 C 0.383 3.617 17 O -0.406 6.406 18 C -0.169 4.169 19 C -0.148 4.148 20 C -0.207 4.207 21 C 0.298 3.702 22 F -0.167 7.167 23 F -0.167 7.167 24 N -0.076 5.076 25 H 0.296 0.704 26 N -0.063 5.063 27 H 0.065 0.935 28 H 0.223 0.777 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.220 0.780 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.248 0.752 35 H 0.189 0.811 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.389 -28.060 0.514 28.578 hybrid contribution 0.382 0.228 -0.324 0.550 sum -5.007 -27.833 0.190 28.280 Atomic orbital electron populations 1.69676 1.05115 1.25680 1.57372 1.24770 0.95544 0.97754 1.02866 0.86170 0.78631 0.83729 0.77524 1.21690 1.21750 1.20735 1.19223 0.91012 0.84087 1.43117 0.91173 1.42240 1.06083 0.99407 1.89363 1.21203 0.93483 0.86528 0.98935 1.22409 0.94621 0.91704 0.88370 0.87639 1.86588 1.37502 1.96215 1.15388 1.22190 0.92143 0.85688 1.03539 1.45761 1.11857 1.04939 1.73057 1.16776 0.86419 0.81472 0.77005 1.90823 1.15194 1.84356 1.50219 1.22077 0.90033 0.94959 1.09793 1.21670 0.98715 0.91688 1.02681 1.21735 0.90881 0.93212 1.14897 1.19259 0.95342 0.83352 0.72208 1.93081 1.83806 1.83564 1.56226 1.93083 1.89622 1.88553 1.45409 1.43171 1.10009 1.02169 1.52212 0.70411 1.73675 1.10314 1.05463 1.16872 0.93478 0.77718 0.95284 0.95827 0.77977 0.90671 0.90020 0.75191 0.81069 0.85892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.38 5.55 -59.91 -0.33 -18.71 16 10 C 0.13 2.45 5.90 -4.04 -0.02 2.42 16 11 C 0.09 1.36 3.09 -26.73 -0.08 1.28 16 12 H 0.11 1.69 8.14 -51.93 -0.42 1.26 16 13 O -0.55 -8.72 13.03 -35.23 -0.46 -9.18 16 14 C 0.09 1.16 5.34 -4.04 -0.02 1.14 16 15 N -0.70 -8.82 5.44 -61.30 -0.33 -9.15 16 16 C 0.60 8.15 7.82 -12.39 -0.10 8.05 16 17 O -0.53 -8.72 16.93 5.31 0.09 -8.63 16 18 C -0.01 -0.10 7.13 -82.76 -0.59 -0.69 16 19 C -0.12 -1.17 10.73 -39.37 -0.42 -1.60 16 20 C -0.08 -0.56 6.66 -82.21 -0.55 -1.11 16 21 C 0.35 1.63 5.79 36.01 0.21 1.84 16 22 F -0.19 -1.27 17.32 2.25 0.04 -1.23 16 23 F -0.19 -1.27 17.32 2.25 0.04 -1.23 16 24 N -0.36 -2.15 6.83 33.50 0.23 -1.92 16 25 H 0.45 0.74 8.96 -190.44 -1.71 -0.97 16 26 N -0.23 -2.17 11.92 33.42 0.40 -1.77 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.39 10.53 7.67 -40.82 -0.31 10.21 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.37 4.87 9.05 45.56 0.41 5.28 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.41 4.86 8.07 -40.82 -0.33 4.53 16 35 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.12 0.00 8.14 -51.93 -0.42 -0.43 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -36.09 333.02 -5.88 -41.97 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -4.44 Total: 11.18 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -1.82 Total: 3.88 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.69 Total: -59.25 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.37 Total: -17.81 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.08 Total: -2.46 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.09 -5.88 -41.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497053605.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.295 kcal (2) G-P(sol) polarization free energy of solvation -36.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds