Wall clock time and date at job start Fri Apr 10 2020 14:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00260 * 2 1 4 4 H 1.48498 * 109.46910 * 269.99466 * 3 2 1 5 5 H 1.48500 * 109.47076 * 29.99662 * 3 2 1 6 6 H 1.48496 * 109.47174 * 149.99903 * 3 2 1 7 7 C 1.38819 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99625 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00022 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47269 * 305.00317 * 11 10 9 13 13 O 1.42903 * 109.46459 * 65.00211 * 11 10 9 14 14 C 1.53001 * 109.47376 * 185.00021 * 11 10 9 15 15 N 1.46497 * 109.46900 * 180.02562 * 14 11 10 16 16 C 1.34783 * 119.99638 * 180.02562 * 15 14 11 17 17 O 1.21563 * 119.99782 * 0.02562 * 16 15 14 18 18 C 1.47710 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.41503 * 126.52030 * 179.97438 * 18 16 15 20 20 C 1.35356 * 105.50587 * 180.02562 * 19 18 16 21 21 C 1.50705 * 126.38506 * 180.02562 * 20 19 18 22 22 F 1.39895 * 109.46891 * 299.99664 * 21 20 19 23 23 F 1.39900 * 109.47148 * 60.00088 * 21 20 19 24 24 N 1.35034 * 107.22822 * 359.97438 * 20 19 18 25 25 H 0.97004 * 124.88545 * 179.97438 * 24 20 19 26 26 N 1.28463 * 110.23108 * 359.72745 * 24 20 19 27 27 H 0.96997 * 120.00150 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99589 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.47040 * 60.00172 * 10 9 7 30 30 H 1.08999 * 109.47079 * 299.99874 * 10 9 7 31 31 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 32 32 H 1.08999 * 109.47164 * 300.00361 * 14 11 10 33 33 H 1.08997 * 109.47124 * 60.00063 * 14 11 10 34 34 H 0.96996 * 120.00310 * 359.97438 * 15 14 11 35 35 H 1.08001 * 127.24180 * 0.02562 * 19 18 16 36 36 H 1.09002 * 109.46686 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8198 0.0012 12 1 0.3799 -4.7127 0.8432 13 8 0.3210 -4.8120 -1.2197 14 6 1.8246 -6.1412 0.1269 15 7 0.8725 -7.2547 0.1269 16 6 1.3184 -8.5225 0.2292 17 8 2.5105 -8.7419 0.3219 18 6 0.3585 -9.6452 0.2297 19 6 0.6723 -11.0214 0.3289 20 6 -0.5163 -11.6676 0.2866 21 6 -0.7266 -13.1582 0.3580 22 9 -0.0642 -13.7741 -0.7092 23 9 -0.2160 -13.6438 1.5666 24 7 -1.4786 -10.7275 0.1697 25 1 -2.4297 -10.9108 0.1166 26 7 -0.9537 -9.5553 0.1440 27 1 -0.4850 0.8400 -0.0004 28 1 0.3555 -2.3881 0.0005 29 1 2.6846 -3.7146 0.8906 30 1 2.6846 -3.7146 -0.8895 31 1 0.8668 -4.9036 -2.0127 32 1 2.5084 -6.2483 -0.7151 33 1 2.3911 -6.1471 1.0580 34 1 -0.0787 -7.0795 0.0541 35 1 1.6537 -11.4631 0.4193 36 1 -1.7926 -13.3779 0.2990 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497053605.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:04 Heat of formation + Delta-G solvation = -130.709838 kcal Electronic energy + Delta-G solvation = -23567.719902 eV Core-core repulsion = 19337.474012 eV Total energy + Delta-G solvation = -4230.245889 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.06770 -48.09021 -43.94456 -40.67947 -38.91370 -36.10040 -35.38117 -33.47455 -33.12976 -32.93854 -30.63137 -27.58067 -27.11064 -25.39485 -23.89998 -22.77988 -22.56554 -21.23052 -19.93858 -19.23798 -18.47580 -18.39371 -18.20664 -17.78921 -17.28092 -16.77738 -16.53007 -16.42702 -16.34510 -15.62479 -15.45449 -15.00227 -14.94300 -14.92607 -14.64319 -14.44262 -14.19840 -13.99199 -13.84167 -13.26492 -12.95905 -12.74960 -12.47532 -12.22018 -12.15663 -11.98489 -11.80968 -11.52787 -10.99837 -10.92104 -10.78140 -10.55617 -10.18733 -9.00963 -7.94667 -5.24180 0.26157 0.63201 1.46897 1.48223 1.49949 1.58421 1.93267 2.17573 2.55923 2.70431 3.08692 3.13852 3.36552 3.46185 3.52787 3.58471 3.89670 3.99101 4.07166 4.16528 4.20961 4.41145 4.48699 4.61894 4.70848 4.94826 4.98032 5.20335 5.25179 5.48797 5.76547 6.26355 6.29737 6.58615 6.79987 7.02580 7.33529 8.08849 8.31794 9.28643 Molecular weight = 304.11amu Principal moments of inertia in cm(-1) A = 0.048973 B = 0.002081 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.603777 B =13450.801131 C =13736.373778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.077 4.077 3 Si 0.976 3.024 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.248 4.248 8 H 0.077 0.923 9 N -0.741 5.741 10 C 0.123 3.877 11 C 0.108 3.892 12 H 0.100 0.900 13 O -0.563 6.563 14 C 0.100 3.900 15 N -0.698 5.698 16 C 0.600 3.400 17 O -0.567 6.567 18 C -0.035 4.035 19 C -0.148 4.148 20 C -0.062 4.062 21 C 0.354 3.646 22 F -0.199 7.199 23 F -0.199 7.199 24 N -0.331 5.331 25 H 0.471 0.529 26 N -0.233 5.233 27 H 0.251 0.749 28 H 0.376 0.624 29 H 0.036 0.964 30 H 0.033 0.967 31 H 0.385 0.615 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.417 0.583 35 H 0.166 0.834 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.703 -30.291 -0.027 30.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.270 4.270 3 Si 0.805 3.195 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.379 4.379 8 H 0.095 0.905 9 N -0.384 5.384 10 C -0.005 4.005 11 C 0.048 3.952 12 H 0.117 0.883 13 O -0.370 6.370 14 C -0.024 4.024 15 N -0.349 5.349 16 C 0.385 3.615 17 O -0.445 6.445 18 C -0.193 4.193 19 C -0.176 4.176 20 C -0.189 4.189 21 C 0.299 3.701 22 F -0.180 7.180 23 F -0.180 7.180 24 N -0.051 5.051 25 H 0.322 0.678 26 N -0.072 5.072 27 H 0.060 0.940 28 H 0.208 0.792 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.234 0.766 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.254 0.746 35 H 0.183 0.817 36 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -5.972 -29.493 0.363 30.093 hybrid contribution 0.535 0.546 -0.295 0.819 sum -5.437 -28.947 0.068 29.453 Atomic orbital electron populations 1.69834 1.06667 1.26097 1.59302 1.25618 0.96431 1.01259 1.03649 0.85108 0.77682 0.79317 0.77442 1.21372 1.22208 1.19352 1.19655 0.91556 0.85300 1.41413 0.90471 1.42431 1.05750 1.00805 1.89383 1.21411 0.94160 0.85557 0.99334 1.22096 0.93554 0.91304 0.88229 0.88263 1.86565 1.38188 1.96200 1.16024 1.21975 0.91871 0.84735 1.03853 1.45662 1.11915 1.04614 1.72696 1.17052 0.86387 0.81999 0.76109 1.90792 1.16760 1.84918 1.52006 1.21782 0.90487 0.94769 1.12255 1.21789 0.99895 0.91517 1.04419 1.22016 0.89878 0.94571 1.12461 1.19871 0.97856 0.81304 0.71099 1.93058 1.84462 1.83567 1.56899 1.93059 1.90110 1.88498 1.46322 1.43233 1.11053 1.01066 1.49771 0.67806 1.73606 1.09514 1.06967 1.17148 0.93999 0.79162 0.94632 0.94864 0.76560 0.90131 0.89936 0.74643 0.81673 0.79964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.92 13.06 21.65 0.28 -59.64 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 3 Si 0.98 46.31 29.55 68.60 2.03 48.34 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.25 -13.85 9.99 84.04 0.84 -13.01 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 9 N -0.74 -37.50 5.55 -343.45 -1.91 -39.41 16 10 C 0.12 4.63 5.90 86.38 0.51 5.14 16 11 C 0.11 3.25 3.09 30.60 0.09 3.34 16 12 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 13 O -0.56 -17.35 13.03 -148.98 -1.94 -19.29 16 14 C 0.10 2.56 5.34 86.38 0.46 3.02 16 15 N -0.70 -17.17 5.44 -466.11 -2.54 -19.71 16 16 C 0.60 16.37 7.82 86.75 0.68 17.04 16 17 O -0.57 -19.00 16.93 -3.91 -0.07 -19.06 16 18 C -0.03 -0.78 7.13 42.46 0.30 -0.48 16 19 C -0.15 -2.85 10.73 22.41 0.24 -2.61 16 20 C -0.06 -0.72 6.66 41.40 0.28 -0.44 16 21 C 0.35 2.20 5.79 71.24 0.41 2.61 16 22 F -0.20 -2.29 17.32 44.97 0.78 -1.52 16 23 F -0.20 -2.30 17.32 44.97 0.78 -1.53 16 24 N -0.33 -3.09 6.83 -47.93 -0.33 -3.42 16 25 H 0.47 -0.18 8.96 -219.99 -1.97 -2.15 16 26 N -0.23 -4.14 11.92 -48.18 -0.57 -4.71 16 27 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.38 20.64 7.67 -92.71 -0.71 19.93 16 29 H 0.04 1.32 8.14 -2.38 -0.02 1.31 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.39 9.65 9.05 -74.06 -0.67 8.98 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.42 9.55 8.07 -92.71 -0.75 8.80 16 35 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 36 H 0.18 -0.95 8.14 -2.39 -0.02 -0.97 16 Total: -1.00 -78.68 333.02 -2.12 -80.80 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -2.91 Total: 28.53 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 4.28 Total: 10.61 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -5.06 Total: -126.88 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -2.01 Total: -38.35 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 1.56 Total: -3.04 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -78.68 -2.12 -80.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497053605.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.914 kcal (2) G-P(sol) polarization free energy of solvation -78.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds