Wall clock time and date at job start Fri Apr 10 2020 14:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72222 * 10 9 7 13 13 O 1.42903 * 109.47059 * 295.00261 * 12 10 9 14 14 C 1.52999 * 109.46963 * 154.72381 * 10 9 7 15 15 N 1.46500 * 109.47226 * 304.99288 * 14 10 9 16 16 C 1.34776 * 119.99923 * 180.02562 * 15 14 10 17 17 O 1.21598 * 120.00403 * 0.02562 * 16 15 14 18 18 C 1.47437 * 119.99503 * 180.02562 * 16 15 14 19 19 C 1.41289 * 126.41670 * 359.68840 * 18 16 15 20 20 N 1.30448 * 108.01669 * 179.85422 * 19 18 16 21 21 N 1.39930 * 108.90331 * 0.40928 * 20 19 18 22 22 C 1.46498 * 125.75767 * 179.73608 * 21 20 19 23 23 F 1.39901 * 109.47078 * 29.99871 * 22 21 20 24 24 F 1.39897 * 109.47395 * 149.99853 * 22 21 20 25 25 C 1.34264 * 108.48836 * 359.73539 * 21 20 19 26 26 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.47241 * 55.00267 * 12 10 9 29 29 H 1.09002 * 109.47280 * 175.00361 * 12 10 9 30 30 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 31 31 H 1.08995 * 109.47415 * 64.99597 * 14 10 9 32 32 H 1.09008 * 109.47087 * 184.99936 * 14 10 9 33 33 H 0.96998 * 120.00120 * 0.02562 * 15 14 10 34 34 H 1.07993 * 125.98521 * 0.02562 * 19 18 16 35 35 H 1.09000 * 109.47084 * 269.99942 * 22 21 20 36 36 H 1.07997 * 126.28470 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9685 -3.5476 0.5965 12 6 2.4223 -4.0429 -1.4277 13 8 1.2283 -4.2995 -2.1697 14 6 1.1804 -4.7490 0.6220 15 7 0.7334 -4.3257 1.9514 16 6 -0.0559 -5.1342 2.6861 17 8 -0.3966 -6.2152 2.2458 18 6 -0.5062 -4.7078 4.0237 19 6 -0.1889 -3.4906 4.6670 20 7 -0.7771 -3.4843 5.8313 21 7 -1.4807 -4.6834 5.9903 22 6 -2.2686 -5.0643 7.1651 23 9 -2.7886 -3.9153 7.7705 24 9 -3.3192 -5.8999 6.7711 25 6 -1.3118 -5.4259 4.8845 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 2.9722 -3.2261 -1.8952 29 1 3.0428 -4.9390 -1.4164 30 1 1.3838 -4.5509 -3.0904 31 1 0.3131 -4.9201 -0.0155 32 1 1.7553 -5.6711 0.7087 33 1 1.0055 -3.4635 2.3028 34 1 0.4296 -2.7023 4.2641 35 1 -1.6311 -5.5920 7.8745 36 1 -1.7292 -6.4051 4.7023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755644154.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:50 Heat of formation + Delta-G solvation = -83.785001 kcal Electronic energy + Delta-G solvation = -24502.118718 eV Core-core repulsion = 20273.907643 eV Total energy + Delta-G solvation = -4228.211076 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.113 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.69640 -47.80793 -41.46020 -38.92199 -37.04863 -34.86705 -33.55380 -32.96470 -31.36621 -30.45647 -28.36448 -26.70606 -25.11276 -23.66168 -22.50052 -21.51562 -20.11245 -19.88062 -18.78250 -18.47824 -17.76513 -17.50651 -16.60883 -16.45723 -15.68141 -15.23688 -15.11369 -14.72179 -14.55091 -14.34216 -14.15749 -14.06594 -13.88062 -13.42007 -13.37079 -13.00049 -12.94698 -12.76444 -12.55052 -11.95519 -11.43346 -11.28673 -10.87638 -10.85310 -10.55428 -10.10294 -10.03768 -9.79593 -9.63386 -9.35365 -9.04015 -8.98015 -8.50109 -7.03904 -5.81344 -3.12040 1.21114 1.51864 2.10783 3.08355 3.39362 3.44554 3.46711 3.47177 3.65460 3.81141 4.04597 4.42259 4.52744 4.72591 4.93764 5.08182 5.19215 5.41115 5.52883 5.56549 5.65359 5.91176 6.03319 6.06534 6.16737 6.28806 6.38759 6.52005 6.76028 6.93656 7.22731 7.62512 7.99542 8.21472 8.35461 8.62333 9.47865 10.03161 10.39665 11.39987 Molecular weight = 304.11amu Principal moments of inertia in cm(-1) A = 0.014171 B = 0.003752 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.366409 B = 7460.722739 C = 9045.437776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.006 4.006 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.249 4.249 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.165 3.835 11 H 0.066 0.934 12 C 0.059 3.941 13 O -0.560 6.560 14 C 0.120 3.880 15 N -0.706 5.706 16 C 0.590 3.410 17 O -0.560 6.560 18 C -0.267 4.267 19 C 0.103 3.897 20 N -0.277 5.277 21 N -0.435 5.435 22 C 0.513 3.487 23 F -0.171 7.171 24 F -0.180 7.180 25 C 0.135 3.865 26 H 0.256 0.744 27 H 0.389 0.611 28 H 0.048 0.952 29 H 0.027 0.973 30 H 0.364 0.636 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.408 0.592 34 H 0.204 0.796 35 H 0.158 0.842 36 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 -12.601 11.610 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.380 4.380 8 H 0.088 0.912 9 N -0.355 5.355 10 C 0.054 3.946 11 H 0.084 0.916 12 C -0.022 4.022 13 O -0.363 6.363 14 C -0.004 4.004 15 N -0.356 5.356 16 C 0.376 3.624 17 O -0.440 6.440 18 C -0.282 4.282 19 C -0.087 4.087 20 N -0.095 5.095 21 N -0.225 5.225 22 C 0.379 3.621 23 F -0.152 7.152 24 F -0.161 7.161 25 C -0.012 4.012 26 H 0.066 0.934 27 H 0.224 0.776 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.208 0.792 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.245 0.755 34 H 0.220 0.780 35 H 0.175 0.825 36 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -0.479 -12.427 13.121 18.078 hybrid contribution 0.524 0.949 -1.331 1.717 sum 0.045 -11.478 11.790 16.455 Atomic orbital electron populations 1.69680 1.05079 1.25752 1.56651 1.24739 0.95418 0.97606 1.02566 0.86244 0.78657 0.84019 0.77509 1.21803 1.21789 1.20742 1.19211 0.90902 0.84040 1.43884 0.91189 1.42381 1.06082 0.99026 1.88028 1.20598 0.95054 0.87038 0.91909 0.91613 1.23033 0.86516 0.97228 0.95430 1.86574 1.32159 1.91683 1.25907 1.21554 0.99542 0.96819 0.82474 1.45746 1.50389 1.21479 1.17995 1.17105 0.78175 0.84005 0.83106 1.90744 1.58068 1.22601 1.72585 1.20502 1.11071 0.97868 0.98729 1.24472 0.96590 0.97030 0.90578 1.77346 1.12183 0.99405 1.20523 1.49765 1.41064 1.16207 1.15452 1.21295 0.80846 0.77777 0.82181 1.93142 1.87669 1.52227 1.82145 1.93144 1.60100 1.71119 1.91783 1.22907 0.95577 0.97907 0.84767 0.93407 0.77626 0.93346 0.95525 0.79173 0.90505 0.92027 0.75513 0.77982 0.82518 0.78883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.92 13.06 55.49 0.72 -26.20 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.90 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.25 -6.40 9.93 -15.06 -0.15 -6.55 16 8 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 9 N -0.71 -16.55 4.51 -53.43 -0.24 -16.80 16 10 C 0.17 3.04 2.84 -67.93 -0.19 2.85 16 11 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 12 C 0.06 1.00 6.86 37.16 0.25 1.26 16 13 O -0.56 -9.83 12.64 -35.23 -0.45 -10.27 16 14 C 0.12 2.09 5.12 -4.04 -0.02 2.07 16 15 N -0.71 -11.79 5.38 -61.38 -0.33 -12.12 16 16 C 0.59 9.97 7.81 -12.51 -0.10 9.87 16 17 O -0.56 -10.91 16.90 5.28 0.09 -10.82 16 18 C -0.27 -3.85 6.13 -105.06 -0.64 -4.49 16 19 C 0.10 1.42 11.50 -16.98 -0.20 1.22 16 20 N -0.28 -3.86 12.32 30.86 0.38 -3.48 16 21 N -0.44 -5.05 3.94 -66.10 -0.26 -5.31 16 22 C 0.51 4.12 6.62 59.85 0.40 4.52 16 23 F -0.17 -1.78 17.35 2.25 0.04 -1.74 16 24 F -0.18 -1.53 17.00 2.25 0.04 -1.49 16 25 C 0.14 1.64 10.84 -16.56 -0.18 1.46 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.39 10.12 7.80 -40.82 -0.32 9.80 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.36 4.58 9.12 45.56 0.42 4.99 16 31 H 0.08 1.52 7.39 -51.93 -0.38 1.13 16 32 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 33 H 0.41 6.70 7.09 -40.82 -0.29 6.42 16 34 H 0.20 2.46 7.50 -52.49 -0.39 2.07 16 35 H 0.16 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.19 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 330.86 15.07 4.99 4.99 Total: -1.00 -34.19 330.86 -4.02 -38.21 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -3.05 Total: 16.70 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: -0.92 Total: 11.93 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: 0.27 Total: -63.90 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.36 Total: -21.09 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.08 Total: -3.23 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.19 -4.02 -38.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755644154.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.578 kcal (2) G-P(sol) polarization free energy of solvation -34.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds