Wall clock time and date at job start Fri Apr 10 2020 14:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72222 * 10 9 7 13 13 O 1.42903 * 109.47059 * 295.00261 * 12 10 9 14 14 C 1.52999 * 109.46963 * 154.72381 * 10 9 7 15 15 N 1.46500 * 109.47226 * 304.99288 * 14 10 9 16 16 C 1.34776 * 119.99923 * 180.02562 * 15 14 10 17 17 O 1.21598 * 120.00403 * 0.02562 * 16 15 14 18 18 C 1.47437 * 119.99503 * 180.02562 * 16 15 14 19 19 C 1.41289 * 126.41670 * 359.68840 * 18 16 15 20 20 N 1.30448 * 108.01669 * 179.85422 * 19 18 16 21 21 N 1.39930 * 108.90331 * 0.40928 * 20 19 18 22 22 C 1.46498 * 125.75767 * 179.73608 * 21 20 19 23 23 F 1.39901 * 109.47078 * 29.99871 * 22 21 20 24 24 F 1.39897 * 109.47395 * 149.99853 * 22 21 20 25 25 C 1.34264 * 108.48836 * 359.73539 * 21 20 19 26 26 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.47241 * 55.00267 * 12 10 9 29 29 H 1.09002 * 109.47280 * 175.00361 * 12 10 9 30 30 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 31 31 H 1.08995 * 109.47415 * 64.99597 * 14 10 9 32 32 H 1.09008 * 109.47087 * 184.99936 * 14 10 9 33 33 H 0.96998 * 120.00120 * 0.02562 * 15 14 10 34 34 H 1.07993 * 125.98521 * 0.02562 * 19 18 16 35 35 H 1.09000 * 109.47084 * 269.99942 * 22 21 20 36 36 H 1.07997 * 126.28470 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9685 -3.5476 0.5965 12 6 2.4223 -4.0429 -1.4277 13 8 1.2283 -4.2995 -2.1697 14 6 1.1804 -4.7490 0.6220 15 7 0.7334 -4.3257 1.9514 16 6 -0.0559 -5.1342 2.6861 17 8 -0.3966 -6.2152 2.2458 18 6 -0.5062 -4.7078 4.0237 19 6 -0.1889 -3.4906 4.6670 20 7 -0.7771 -3.4843 5.8313 21 7 -1.4807 -4.6834 5.9903 22 6 -2.2686 -5.0643 7.1651 23 9 -2.7886 -3.9153 7.7705 24 9 -3.3192 -5.8999 6.7711 25 6 -1.3118 -5.4259 4.8845 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 2.9722 -3.2261 -1.8952 29 1 3.0428 -4.9390 -1.4164 30 1 1.3838 -4.5509 -3.0904 31 1 0.3131 -4.9201 -0.0155 32 1 1.7553 -5.6711 0.7087 33 1 1.0055 -3.4635 2.3028 34 1 0.4296 -2.7023 4.2641 35 1 -1.6311 -5.5920 7.8745 36 1 -1.7292 -6.4051 4.7023 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755644154.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:49 Heat of formation + Delta-G solvation = -112.457503 kcal Electronic energy + Delta-G solvation = -24503.362051 eV Core-core repulsion = 20273.907643 eV Total energy + Delta-G solvation = -4229.454409 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.113 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -50.38162 -48.51002 -42.47781 -40.26596 -38.50117 -36.33701 -35.16364 -34.02187 -33.02459 -31.57389 -30.02030 -27.67547 -26.30933 -25.56193 -23.66468 -22.44453 -21.55322 -21.08382 -19.81721 -19.32059 -19.12716 -18.46114 -18.10952 -17.62667 -17.09286 -16.55539 -16.31178 -15.98375 -15.68753 -15.50478 -15.26960 -15.15024 -14.86881 -14.84621 -14.70332 -14.36201 -14.26090 -13.93976 -13.60173 -13.27051 -13.00238 -12.68959 -12.63922 -12.38617 -12.19099 -11.83705 -11.68788 -11.05675 -11.00343 -10.87234 -10.67295 -10.19422 -9.79721 -8.96247 -7.86273 -5.15108 0.22764 0.69677 0.99677 1.52773 1.53421 1.61457 2.29663 2.43053 2.52967 2.61136 2.87421 3.46727 3.50671 3.55903 3.66618 3.75446 3.96110 3.97960 4.09984 4.22104 4.49267 4.55682 4.62257 4.68215 4.94932 5.05538 5.16353 5.29636 5.34814 5.55762 5.60755 6.21545 6.32371 6.66713 7.11092 7.29731 7.41017 8.14047 8.39015 9.36414 Molecular weight = 304.11amu Principal moments of inertia in cm(-1) A = 0.014171 B = 0.003752 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.366409 B = 7460.722739 C = 9045.437776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.069 4.069 3 Si 0.965 3.035 4 H -0.296 1.296 5 H -0.303 1.303 6 H -0.264 1.264 7 C -0.234 4.234 8 H 0.083 0.917 9 N -0.722 5.722 10 C 0.161 3.839 11 H 0.082 0.918 12 C 0.064 3.936 13 O -0.584 6.584 14 C 0.131 3.869 15 N -0.705 5.705 16 C 0.591 3.409 17 O -0.590 6.590 18 C -0.295 4.295 19 C 0.102 3.898 20 N -0.298 5.298 21 N -0.431 5.431 22 C 0.507 3.493 23 F -0.186 7.186 24 F -0.182 7.182 25 C 0.153 3.847 26 H 0.247 0.753 27 H 0.372 0.628 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.385 0.615 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.410 0.590 34 H 0.209 0.791 35 H 0.215 0.785 36 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.505 -13.787 12.594 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.262 4.262 3 Si 0.796 3.204 4 H -0.223 1.223 5 H -0.230 1.230 6 H -0.189 1.189 7 C -0.365 4.365 8 H 0.101 0.899 9 N -0.362 5.362 10 C 0.051 3.949 11 H 0.100 0.900 12 C -0.017 4.017 13 O -0.391 6.391 14 C 0.007 3.993 15 N -0.355 5.355 16 C 0.379 3.621 17 O -0.473 6.473 18 C -0.309 4.309 19 C -0.088 4.088 20 N -0.116 5.116 21 N -0.220 5.220 22 C 0.375 3.625 23 F -0.167 7.167 24 F -0.163 7.163 25 C 0.005 3.995 26 H 0.056 0.944 27 H 0.204 0.796 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.233 0.767 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.246 0.754 34 H 0.225 0.775 35 H 0.231 0.769 36 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.815 -13.643 14.114 19.646 hybrid contribution 0.122 1.177 -1.621 2.007 sum 0.937 -12.465 12.493 17.673 Atomic orbital electron populations 1.69845 1.06652 1.25639 1.59563 1.25432 0.96029 1.00668 1.04050 0.85262 0.77978 0.80239 0.76954 1.22337 1.23025 1.18905 1.19620 0.91511 0.84781 1.40628 0.89948 1.42492 1.05385 1.00217 1.88143 1.20867 0.95191 0.85287 0.93506 0.90030 1.22890 0.86532 0.98585 0.93698 1.86528 1.32932 1.91858 1.27772 1.21392 0.98456 0.97177 0.82293 1.45730 1.50496 1.21519 1.17763 1.17398 0.77490 0.83440 0.83790 1.90716 1.59235 1.23813 1.73509 1.20372 1.13244 0.98998 0.98307 1.24564 0.96638 0.97027 0.90551 1.77288 1.12945 1.00753 1.20635 1.50107 1.40482 1.15272 1.16167 1.22272 0.81144 0.77448 0.81617 1.93114 1.87980 1.53436 1.82170 1.93143 1.60454 1.70909 1.91813 1.23241 0.93863 0.98292 0.84103 0.94422 0.79589 0.94577 0.91546 0.76731 0.93143 0.90101 0.75395 0.77489 0.76909 0.76550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.55 13.06 21.65 0.28 -57.26 16 2 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 3 Si 0.97 44.23 29.55 68.60 2.03 46.26 16 4 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 7 C -0.23 -11.83 9.93 84.03 0.83 -11.00 16 8 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.72 -33.38 4.51 -322.94 -1.46 -34.84 16 10 C 0.16 5.69 2.84 44.99 0.13 5.82 16 11 H 0.08 2.65 8.08 -2.39 -0.02 2.63 16 12 C 0.06 2.02 6.86 71.98 0.49 2.51 16 13 O -0.58 -19.81 12.64 -148.98 -1.88 -21.70 16 14 C 0.13 4.46 5.12 86.38 0.44 4.90 16 15 N -0.71 -23.43 5.38 -466.37 -2.51 -25.94 16 16 C 0.59 19.85 7.81 86.67 0.68 20.53 16 17 O -0.59 -22.84 16.90 -4.03 -0.07 -22.90 16 18 C -0.29 -8.32 6.13 -20.15 -0.12 -8.44 16 19 C 0.10 2.76 11.50 85.65 0.99 3.74 16 20 N -0.30 -8.02 12.32 -56.28 -0.69 -8.71 16 21 N -0.43 -9.19 3.94 -363.03 -1.43 -10.62 16 22 C 0.51 6.81 6.62 127.77 0.85 7.66 16 23 F -0.19 -3.55 17.35 44.97 0.78 -2.77 16 24 F -0.18 -2.65 17.00 44.97 0.76 -1.88 16 25 C 0.15 3.46 10.84 84.27 0.91 4.38 16 26 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.37 19.71 7.80 -92.71 -0.72 18.98 16 28 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.38 9.09 9.12 -74.06 -0.68 8.41 16 31 H 0.05 2.00 7.39 -2.39 -0.02 1.98 16 32 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 33 H 0.41 13.46 7.09 -92.71 -0.66 12.80 16 34 H 0.21 5.11 7.50 -2.91 -0.02 5.09 16 35 H 0.22 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.22 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -74.24 330.86 0.59 -73.65 By element: Atomic # 1 Polarization: 40.80 SS G_CDS: -0.89 Total: 39.92 kcal Atomic # 6 Polarization: 21.14 SS G_CDS: 5.66 Total: 26.80 kcal Atomic # 7 Polarization: -131.57 SS G_CDS: -5.81 Total: -137.37 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -1.95 Total: -44.60 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 1.54 Total: -4.65 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -74.24 0.59 -73.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755644154.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.807 kcal (2) G-P(sol) polarization free energy of solvation -74.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds