Wall clock time and date at job start Fri Apr 10 2020 14:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46541 * 2 1 4 4 N 1.46493 * 109.47618 * 120.00055 * 2 1 3 5 5 S 1.65593 * 120.00288 * 265.00380 * 4 2 1 6 6 C 1.81407 * 104.45165 * 64.99816 * 5 4 2 7 7 O 1.42104 * 104.27862 * 308.92782 * 5 4 2 8 8 O 1.42104 * 104.27963 * 181.06822 * 5 4 2 9 9 C 1.50695 * 109.46880 * 240.00685 * 2 1 3 10 10 O 1.21286 * 119.99840 * 245.79704 * 9 2 1 11 11 N 1.34778 * 120.00414 * 65.80490 * 9 2 1 12 12 C 1.46499 * 120.00007 * 4.68634 * 11 9 2 13 13 C 1.50696 * 109.47423 * 96.59147 * 12 11 9 14 14 H 1.08005 * 119.99749 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00088 * 179.97438 * 13 12 11 16 16 N 1.31507 * 119.99865 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99893 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47333 * 89.99470 * 17 15 13 19 19 H 1.48497 * 109.46912 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47094 * 329.99775 * 17 15 13 21 21 C 1.46500 * 119.99809 * 184.68294 * 11 9 2 22 22 C 1.52998 * 109.47081 * 84.83748 * 21 11 9 23 23 C 1.52997 * 117.50065 * 243.74289 * 22 21 11 24 24 C 1.53000 * 117.50047 * 175.08114 * 22 21 11 25 25 H 1.09000 * 109.46739 * 189.49335 * 1 2 3 26 26 H 1.09003 * 109.47003 * 309.48804 * 1 2 3 27 27 H 1.08995 * 109.47617 * 69.49612 * 1 2 3 28 28 H 0.97001 * 119.99914 * 85.00263 * 4 2 1 29 29 H 1.08999 * 109.46954 * 300.00250 * 6 5 4 30 30 H 1.09000 * 109.46953 * 59.99748 * 6 5 4 31 31 H 1.08998 * 109.46999 * 180.02562 * 6 5 4 32 32 H 1.08999 * 109.46844 * 216.59941 * 12 11 9 33 33 H 1.08999 * 109.46970 * 336.59276 * 12 11 9 34 34 H 0.97003 * 119.99774 * 180.02562 * 16 15 13 35 35 H 1.09006 * 109.47179 * 204.83067 * 21 11 9 36 36 H 1.09000 * 109.47654 * 324.83537 * 21 11 9 37 37 H 1.09006 * 115.55112 * 29.41720 * 22 21 11 38 38 H 1.09000 * 117.49882 * 0.02562 * 23 22 21 39 39 H 1.09000 * 117.49742 * 145.01916 * 23 22 21 40 40 H 1.09000 * 117.49955 * 214.97474 * 24 22 21 41 41 H 1.08994 * 117.50049 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 7 2.0184 -0.6906 1.1961 5 16 2.4122 0.1771 2.5504 6 6 0.8407 0.8988 3.0986 7 8 3.2874 1.1907 2.0750 8 8 2.8607 -0.8030 3.4764 9 6 2.0322 -0.7102 -1.2305 10 8 2.6403 -1.7541 -1.1225 11 7 1.8058 -0.1855 -2.4512 12 6 1.1627 1.1246 -2.5775 13 6 2.2171 2.1874 -2.7495 14 1 3.2619 1.9142 -2.7637 15 6 1.8479 3.5085 -2.8897 16 7 2.7681 4.4359 -3.0403 17 14 0.0408 3.9809 -2.8658 18 1 -0.3767 4.2705 -1.4704 19 1 -0.1663 5.1882 -3.7052 20 1 -0.7711 2.8594 -3.4026 21 6 2.2031 -0.9254 -3.6516 22 6 1.0989 -1.9148 -4.0296 23 6 1.4379 -3.4058 -3.9767 24 6 1.2729 -2.7055 -5.3278 25 1 -0.3633 -1.0136 0.1695 26 1 -0.3633 0.6535 0.7931 27 1 -0.3634 0.3599 -0.9625 28 1 2.1111 -1.6561 1.1947 29 1 0.4386 1.5351 2.3102 30 1 0.1316 0.1007 3.3185 31 1 1.0079 1.4944 3.9960 32 1 0.5030 1.1233 -3.4452 33 1 0.5810 1.3319 -1.6793 34 1 2.5084 5.3653 -3.1386 35 1 2.3616 -0.2267 -4.4732 36 1 3.1266 -1.4696 -3.4541 37 1 0.0871 -1.6185 -3.7525 38 1 2.4474 -3.6819 -3.6722 39 1 0.6491 -4.0905 -3.6651 40 1 0.3756 -2.9299 -5.9045 41 1 2.1741 -2.5212 -5.9124 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114180422.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:43 Heat of formation + Delta-G solvation = -70.248964 kcal Electronic energy + Delta-G solvation = -24310.689867 eV Core-core repulsion = 20740.446488 eV Total energy + Delta-G solvation = -3570.243379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.73679 -37.23467 -36.95872 -35.83297 -35.21305 -34.99725 -32.50602 -30.12868 -29.49261 -28.33585 -26.61056 -23.77057 -22.39820 -22.08767 -20.64287 -19.44436 -18.92063 -17.79371 -17.06918 -16.54498 -16.28793 -16.00141 -15.48707 -15.05619 -14.83263 -14.31592 -14.10265 -13.87450 -13.68960 -13.31329 -13.09336 -12.92471 -12.60532 -12.34679 -12.20708 -11.98966 -11.93194 -11.80346 -11.55654 -11.47945 -11.38142 -11.30922 -10.97755 -10.93332 -10.69328 -10.42176 -10.18065 -9.69477 -9.68462 -9.59017 -9.07436 -8.74964 -7.87346 -6.23842 -4.26361 0.31659 2.73737 3.10632 3.14559 3.17780 3.21397 3.62319 3.87500 4.05697 4.21204 4.26089 4.67765 4.78383 4.94255 5.00338 5.05355 5.14284 5.16339 5.23426 5.30040 5.45288 5.53333 5.65450 5.72819 5.77725 5.96163 6.04636 6.08917 6.11060 6.17820 6.29296 6.36936 6.53564 6.57000 7.14639 7.22202 7.38984 8.00957 8.35772 8.71671 8.85475 9.33564 10.88935 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.010061 B = 0.006853 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.474862 B = 4084.916123 C = 6044.259164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.125 3.875 3 H 0.129 0.871 4 N -1.099 6.099 5 S 2.612 3.388 6 C -0.677 4.677 7 O -0.945 6.945 8 O -0.963 6.963 9 C 0.523 3.477 10 O -0.554 6.554 11 N -0.583 5.583 12 C 0.194 3.806 13 C -0.546 4.546 14 H 0.081 0.919 15 C 0.077 3.923 16 N -0.886 5.886 17 Si 0.866 3.134 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.263 1.263 21 C 0.151 3.849 22 C -0.162 4.162 23 C -0.173 4.173 24 C -0.180 4.180 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.422 0.578 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.036 0.964 33 H 0.042 0.958 34 H 0.267 0.733 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.211 -9.053 5.233 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.014 3.986 3 H 0.147 0.853 4 N -0.859 5.859 5 S 2.703 3.297 6 C -0.827 4.827 7 O -0.935 6.935 8 O -0.954 6.954 9 C 0.308 3.692 10 O -0.433 6.433 11 N -0.313 5.313 12 C 0.073 3.927 13 C -0.584 4.584 14 H 0.099 0.901 15 C -0.127 4.127 16 N -0.523 5.523 17 Si 0.693 3.307 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.188 1.188 21 C 0.028 3.972 22 C -0.181 4.181 23 C -0.210 4.210 24 C -0.217 4.217 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.259 0.741 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.017 -9.082 5.630 13.359 hybrid contribution -1.687 0.337 -0.160 1.728 sum -9.704 -8.745 5.470 14.162 Atomic orbital electron populations 1.22606 0.93734 1.03249 1.04443 1.20718 0.94852 0.98489 0.84579 0.85312 1.55337 1.84005 1.20512 1.26067 1.04813 0.76742 0.74713 0.73472 1.30674 1.24815 1.14168 1.13041 1.93683 1.60384 1.60556 1.78871 1.93599 1.79562 1.59104 1.63092 1.20157 0.79467 0.84939 0.84601 1.90599 1.41877 1.24410 1.86404 1.47786 1.59171 1.19966 1.04351 1.20164 0.94413 0.80105 0.98009 1.21376 0.94752 0.90394 1.51866 0.90138 1.24882 0.97211 0.96290 0.94293 1.69886 1.33017 1.01216 1.48135 0.87005 0.85871 0.79011 0.78843 1.19734 1.20759 1.18752 1.20887 0.95321 0.93380 0.87650 1.22777 1.00807 0.93278 1.01251 1.22964 1.02760 0.95095 1.00191 1.22926 1.03054 1.04996 0.90761 0.91255 0.91445 0.89225 0.74102 0.84968 0.85281 0.85403 0.94651 0.94080 0.92274 0.89314 0.90653 0.88048 0.88640 0.89569 0.89173 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 8.87 37.16 0.33 -1.89 16 2 C 0.12 1.99 2.38 -69.09 -0.16 1.83 16 3 H 0.13 2.27 7.05 -51.93 -0.37 1.91 16 4 N -1.10 -15.63 5.19 -5.89 -0.03 -15.66 16 5 S 2.61 35.36 6.08 -107.50 -0.65 34.70 16 6 C -0.68 -5.90 10.26 101.05 1.04 -4.86 16 7 O -0.95 -17.40 17.39 -57.54 -1.00 -18.40 16 8 O -0.96 -15.23 18.08 -57.54 -1.04 -16.27 16 9 C 0.52 9.93 7.01 -10.99 -0.08 9.85 16 10 O -0.55 -11.42 15.60 5.55 0.09 -11.33 16 11 N -0.58 -11.14 2.47 -175.06 -0.43 -11.57 16 12 C 0.19 3.96 3.50 -5.20 -0.02 3.94 16 13 C -0.55 -13.95 9.92 -34.44 -0.34 -14.29 16 14 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 15 C 0.08 2.03 5.47 -17.82 -0.10 1.94 16 16 N -0.89 -25.41 13.96 55.43 0.77 -24.64 16 17 Si 0.87 18.72 27.47 -169.99 -4.67 14.05 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.26 -5.24 6.54 56.52 0.37 -4.87 16 21 C 0.15 2.63 5.69 -4.04 -0.02 2.60 16 22 C -0.16 -2.36 5.97 -90.62 -0.54 -2.90 16 23 C -0.17 -2.29 10.18 -26.69 -0.27 -2.56 16 24 C -0.18 -2.19 10.25 -26.69 -0.27 -2.46 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.64 6.02 -51.93 -0.31 0.32 16 27 H 0.09 1.16 5.43 -51.93 -0.28 0.88 16 28 H 0.42 5.78 8.11 -34.46 -0.28 5.50 16 29 H 0.13 1.09 6.65 -51.92 -0.35 0.75 16 30 H 0.13 0.84 8.14 -51.92 -0.42 0.41 16 31 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.04 0.71 7.18 -51.93 -0.37 0.34 16 33 H 0.04 0.77 3.54 -51.93 -0.18 0.58 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.09 1.57 8.03 -51.93 -0.42 1.15 16 36 H 0.08 1.37 7.25 -51.93 -0.38 0.99 16 37 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.10 1.34 8.03 -51.93 -0.42 0.92 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 347.17 15.07 5.23 5.23 Total: -1.00 -34.35 347.17 -8.08 -42.43 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -5.90 Total: 10.26 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -0.44 Total: -8.82 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.31 Total: -51.86 kcal Atomic # 8 Polarization: -44.04 SS G_CDS: -1.95 Total: -45.99 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -4.67 Total: 14.05 kcal Atomic # 16 Polarization: 35.36 SS G_CDS: -0.65 Total: 34.70 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.35 -8.08 -42.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114180422.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.816 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds