Wall clock time and date at job start Fri Apr 10 2020 14:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46541 * 2 1 4 4 N 1.46493 * 109.47618 * 120.00055 * 2 1 3 5 5 S 1.65593 * 120.00288 * 265.00380 * 4 2 1 6 6 C 1.81407 * 104.45165 * 64.99816 * 5 4 2 7 7 O 1.42104 * 104.27862 * 308.92782 * 5 4 2 8 8 O 1.42104 * 104.27963 * 181.06822 * 5 4 2 9 9 C 1.50695 * 109.46880 * 240.00685 * 2 1 3 10 10 O 1.21286 * 119.99840 * 245.79704 * 9 2 1 11 11 N 1.34778 * 120.00414 * 65.80490 * 9 2 1 12 12 C 1.46499 * 120.00007 * 4.68634 * 11 9 2 13 13 C 1.50696 * 109.47423 * 96.59147 * 12 11 9 14 14 H 1.08005 * 119.99749 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00088 * 179.97438 * 13 12 11 16 16 N 1.31507 * 119.99865 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99893 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47333 * 89.99470 * 17 15 13 19 19 H 1.48497 * 109.46912 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47094 * 329.99775 * 17 15 13 21 21 C 1.46500 * 119.99809 * 184.68294 * 11 9 2 22 22 C 1.52998 * 109.47081 * 84.83748 * 21 11 9 23 23 C 1.52997 * 117.50065 * 243.74289 * 22 21 11 24 24 C 1.53000 * 117.50047 * 175.08114 * 22 21 11 25 25 H 1.09000 * 109.46739 * 189.49335 * 1 2 3 26 26 H 1.09003 * 109.47003 * 309.48804 * 1 2 3 27 27 H 1.08995 * 109.47617 * 69.49612 * 1 2 3 28 28 H 0.97001 * 119.99914 * 85.00263 * 4 2 1 29 29 H 1.08999 * 109.46954 * 300.00250 * 6 5 4 30 30 H 1.09000 * 109.46953 * 59.99748 * 6 5 4 31 31 H 1.08998 * 109.46999 * 180.02562 * 6 5 4 32 32 H 1.08999 * 109.46844 * 216.59941 * 12 11 9 33 33 H 1.08999 * 109.46970 * 336.59276 * 12 11 9 34 34 H 0.97003 * 119.99774 * 180.02562 * 16 15 13 35 35 H 1.09006 * 109.47179 * 204.83067 * 21 11 9 36 36 H 1.09000 * 109.47654 * 324.83537 * 21 11 9 37 37 H 1.09006 * 115.55112 * 29.41720 * 22 21 11 38 38 H 1.09000 * 117.49882 * 0.02562 * 23 22 21 39 39 H 1.09000 * 117.49742 * 145.01916 * 23 22 21 40 40 H 1.09000 * 117.49955 * 214.97474 * 24 22 21 41 41 H 1.08994 * 117.50049 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 7 2.0184 -0.6906 1.1961 5 16 2.4122 0.1771 2.5504 6 6 0.8407 0.8988 3.0986 7 8 3.2874 1.1907 2.0750 8 8 2.8607 -0.8030 3.4764 9 6 2.0322 -0.7102 -1.2305 10 8 2.6403 -1.7541 -1.1225 11 7 1.8058 -0.1855 -2.4512 12 6 1.1627 1.1246 -2.5775 13 6 2.2171 2.1874 -2.7495 14 1 3.2619 1.9142 -2.7637 15 6 1.8479 3.5085 -2.8897 16 7 2.7681 4.4359 -3.0403 17 14 0.0408 3.9809 -2.8658 18 1 -0.3767 4.2705 -1.4704 19 1 -0.1663 5.1882 -3.7052 20 1 -0.7711 2.8594 -3.4026 21 6 2.2031 -0.9254 -3.6516 22 6 1.0989 -1.9148 -4.0296 23 6 1.4379 -3.4058 -3.9767 24 6 1.2729 -2.7055 -5.3278 25 1 -0.3633 -1.0136 0.1695 26 1 -0.3633 0.6535 0.7931 27 1 -0.3634 0.3599 -0.9625 28 1 2.1111 -1.6561 1.1947 29 1 0.4386 1.5351 2.3102 30 1 0.1316 0.1007 3.3185 31 1 1.0079 1.4944 3.9960 32 1 0.5030 1.1233 -3.4452 33 1 0.5810 1.3319 -1.6793 34 1 2.5084 5.3653 -3.1386 35 1 2.3616 -0.2267 -4.4732 36 1 3.1266 -1.4696 -3.4541 37 1 0.0871 -1.6185 -3.7525 38 1 2.4474 -3.6819 -3.6722 39 1 0.6491 -4.0905 -3.6651 40 1 0.3756 -2.9299 -5.9045 41 1 2.1741 -2.5212 -5.9124 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114180422.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:42 Heat of formation + Delta-G solvation = -97.771096 kcal Electronic energy + Delta-G solvation = -24311.883317 eV Core-core repulsion = 20740.446488 eV Total energy + Delta-G solvation = -3571.436828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.18355 -38.40434 -38.15909 -37.04119 -36.64758 -36.34496 -34.44580 -31.23060 -30.33950 -30.03101 -27.97244 -25.18718 -23.94992 -23.15567 -21.84989 -20.57362 -20.28381 -19.04098 -18.98879 -17.91436 -17.58266 -17.16393 -16.78943 -16.33866 -16.11376 -15.99950 -15.32462 -15.04760 -14.73650 -14.55591 -14.22642 -14.09561 -13.93258 -13.82561 -13.38201 -13.21162 -13.19030 -13.11100 -12.95396 -12.78659 -12.62808 -12.51176 -12.32631 -12.20206 -11.97198 -11.93007 -11.63541 -11.29399 -10.92079 -10.82918 -10.71230 -10.39198 -9.45808 -8.25406 -6.34869 -0.70280 1.43356 1.47409 1.56768 1.61123 1.69509 2.23590 2.39597 2.87479 2.95535 3.08168 3.27222 3.46946 3.85912 3.98011 4.04158 4.06077 4.14303 4.16758 4.19729 4.35699 4.41971 4.59599 4.67348 4.77366 4.80343 4.82256 4.88208 5.00380 5.02861 5.05167 5.25698 5.28855 5.30272 5.50076 5.69962 6.02342 6.19047 6.62258 6.71934 7.20066 7.33192 8.91800 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.010061 B = 0.006853 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.474862 B = 4084.916123 C = 6044.259164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.124 3.876 3 H 0.107 0.893 4 N -1.100 6.100 5 S 2.605 3.395 6 C -0.644 4.644 7 O -1.009 7.009 8 O -0.994 6.994 9 C 0.511 3.489 10 O -0.578 6.578 11 N -0.588 5.588 12 C 0.202 3.798 13 C -0.550 4.550 14 H 0.019 0.981 15 C 0.012 3.988 16 N -0.947 5.947 17 Si 0.941 3.059 18 H -0.249 1.249 19 H -0.291 1.291 20 H -0.226 1.226 21 C 0.148 3.852 22 C -0.174 4.174 23 C -0.172 4.172 24 C -0.160 4.160 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.423 0.577 29 H 0.148 0.852 30 H 0.166 0.834 31 H 0.154 0.846 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.268 0.732 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.056 -9.657 6.075 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.012 3.988 3 H 0.125 0.875 4 N -0.859 5.859 5 S 2.702 3.298 6 C -0.799 4.799 7 O -0.999 6.999 8 O -0.985 6.985 9 C 0.298 3.702 10 O -0.459 6.459 11 N -0.317 5.317 12 C 0.081 3.919 13 C -0.589 4.589 14 H 0.037 0.963 15 C -0.187 4.187 16 N -0.586 5.586 17 Si 0.762 3.238 18 H -0.173 1.173 19 H -0.217 1.217 20 H -0.149 1.149 21 C 0.025 3.975 22 C -0.193 4.193 23 C -0.209 4.209 24 C -0.197 4.197 25 H 0.108 0.892 26 H 0.122 0.878 27 H 0.104 0.896 28 H 0.260 0.740 29 H 0.166 0.834 30 H 0.184 0.816 31 H 0.172 0.828 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.128 0.872 38 H 0.098 0.902 39 H 0.121 0.879 40 H 0.133 0.867 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.814 -9.750 6.453 17.346 hybrid contribution -0.034 0.497 -0.402 0.640 sum -12.847 -9.253 6.051 16.949 Atomic orbital electron populations 1.22658 0.89901 1.05620 1.05621 1.20747 0.97780 0.96759 0.83470 0.87519 1.55226 1.84355 1.20425 1.25911 1.04748 0.78568 0.73673 0.72772 1.30387 1.19851 1.15349 1.14328 1.93610 1.64652 1.61806 1.79871 1.93552 1.81558 1.60090 1.63269 1.20867 0.78964 0.84927 0.85477 1.90574 1.42824 1.25699 1.86830 1.47862 1.59161 1.19651 1.05074 1.20072 0.93044 0.78921 0.99898 1.21584 0.93401 0.92401 1.51491 0.96255 1.25970 1.03380 0.95847 0.93456 1.70094 1.36392 1.01768 1.50369 0.85826 0.78664 0.79240 0.80109 1.17264 1.21668 1.14871 1.20902 0.96071 0.93623 0.86905 1.22615 0.99757 0.93167 1.03795 1.22973 1.02469 0.94344 1.01151 1.23037 1.04145 1.02463 0.90061 0.89205 0.87795 0.89562 0.74012 0.83367 0.81607 0.82814 0.93039 0.90976 0.92337 0.90530 0.92652 0.87193 0.90226 0.87863 0.86701 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.65 8.87 71.98 0.64 -3.01 16 2 C 0.12 3.84 2.38 44.24 0.11 3.94 16 3 H 0.11 3.79 7.05 -2.38 -0.02 3.77 16 4 N -1.10 -30.64 5.19 -172.54 -0.90 -31.53 16 5 S 2.60 68.89 6.08 -56.49 -0.34 68.54 16 6 C -0.64 -8.13 10.26 113.37 1.16 -6.97 16 7 O -1.01 -38.65 17.39 -127.65 -2.22 -40.87 16 8 O -0.99 -31.35 18.08 -127.65 -2.31 -33.65 16 9 C 0.51 19.62 7.01 87.66 0.61 20.24 16 10 O -0.58 -24.58 15.60 -3.05 -0.05 -24.63 16 11 N -0.59 -22.72 2.47 -826.16 -2.04 -24.76 16 12 C 0.20 8.05 3.50 85.63 0.30 8.35 16 13 C -0.55 -29.17 9.92 25.60 0.25 -28.92 16 14 H 0.02 1.21 8.06 -2.91 -0.02 1.19 16 15 C 0.01 0.63 5.47 84.66 0.46 1.10 16 16 N -0.95 -56.71 13.96 21.45 0.30 -56.41 16 17 Si 0.94 37.08 27.47 68.60 1.88 38.96 16 18 H -0.25 -8.88 7.11 99.48 0.71 -8.18 16 19 H -0.29 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.23 -7.55 6.54 99.48 0.65 -6.90 16 21 C 0.15 5.32 5.69 86.38 0.49 5.81 16 22 C -0.17 -4.87 5.97 -10.80 -0.06 -4.94 16 23 C -0.17 -4.34 10.18 30.62 0.31 -4.03 16 24 C -0.16 -3.57 10.25 30.62 0.31 -3.25 16 25 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.10 1.34 6.02 -2.39 -0.01 1.33 16 27 H 0.09 1.84 5.43 -2.39 -0.01 1.82 16 28 H 0.42 11.56 8.11 -96.75 -0.78 10.77 16 29 H 0.15 1.59 6.65 -2.39 -0.02 1.58 16 30 H 0.17 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.92 7.18 -2.39 -0.02 1.90 16 33 H 0.07 2.48 3.54 -2.39 -0.01 2.47 16 34 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.08 2.84 8.03 -2.38 -0.02 2.83 16 36 H 0.06 2.15 7.25 -2.39 -0.02 2.14 16 37 H 0.11 2.91 8.14 -2.38 -0.02 2.89 16 38 H 0.08 2.25 8.03 -2.39 -0.02 2.23 16 39 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -82.11 347.17 -0.87 -82.98 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.21 Total: 33.05 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 4.59 Total: -11.68 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -2.64 Total: -112.70 kcal Atomic # 8 Polarization: -94.58 SS G_CDS: -4.58 Total: -99.16 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 1.88 Total: 38.96 kcal Atomic # 16 Polarization: 68.89 SS G_CDS: -0.34 Total: 68.54 kcal Total: -82.11 -0.87 -82.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114180422.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.791 kcal (2) G-P(sol) polarization free energy of solvation -82.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds