Wall clock time and date at job start Fri Apr 10 2020 14:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47322 * 2 1 4 4 C 1.50705 * 109.47251 * 239.99997 * 2 1 3 5 5 O 1.21288 * 119.99850 * 265.00100 * 4 2 1 6 6 N 1.34777 * 120.00159 * 85.00079 * 4 2 1 7 7 C 1.46496 * 120.00142 * 180.02562 * 6 4 2 8 8 C 1.46497 * 119.99746 * 359.97438 * 6 4 2 9 9 S 1.81399 * 109.47227 * 120.00155 * 2 1 3 10 10 O 1.42095 * 110.54410 * 192.69468 * 9 2 1 11 11 O 1.42099 * 110.54339 * 55.93594 * 9 2 1 12 12 N 1.65602 * 104.44580 * 304.31676 * 9 2 1 13 13 C 1.46504 * 120.00066 * 59.16423 * 12 9 2 14 14 C 1.53000 * 109.47247 * 151.07417 * 13 12 9 15 15 C 1.50692 * 115.55044 * 298.49668 * 14 13 12 16 16 H 1.07999 * 120.00452 * 93.66836 * 15 14 13 17 17 C 1.37888 * 119.99913 * 273.39605 * 15 14 13 18 18 N 1.31515 * 119.99733 * 356.41550 * 17 15 14 19 19 Si 1.86797 * 119.99998 * 176.41281 * 17 15 14 20 20 H 1.48501 * 109.47306 * 60.00045 * 19 17 15 21 21 H 1.48498 * 109.47137 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47157 * 299.99955 * 19 17 15 23 23 C 1.53004 * 117.49629 * 84.16334 * 14 13 12 24 24 C 1.53004 * 117.49899 * 152.82169 * 14 13 12 25 25 H 1.09005 * 109.46728 * 68.55890 * 1 2 3 26 26 H 1.09009 * 109.47167 * 188.55450 * 1 2 3 27 27 H 1.08998 * 109.47245 * 308.55665 * 1 2 3 28 28 H 1.08998 * 109.47346 * 89.99945 * 7 6 4 29 29 H 1.08998 * 109.47513 * 210.00124 * 7 6 4 30 30 H 1.09004 * 109.46887 * 329.99945 * 7 6 4 31 31 H 1.09003 * 109.47333 * 359.97438 * 8 6 4 32 32 H 1.09001 * 109.47138 * 120.00371 * 8 6 4 33 33 H 1.09002 * 109.47011 * 240.00188 * 8 6 4 34 34 H 0.96996 * 119.99883 * 239.15734 * 12 9 2 35 35 H 1.09000 * 109.47233 * 31.07086 * 13 12 9 36 36 H 1.09003 * 109.46573 * 271.06951 * 13 12 9 37 37 H 0.96997 * 119.99443 * 185.01380 * 18 17 15 38 38 H 1.09004 * 117.49513 * 214.99770 * 23 14 13 39 39 H 1.09003 * 117.50196 * 0.02846 * 23 14 13 40 40 H 1.09001 * 117.49523 * 359.97438 * 24 14 13 41 41 H 1.09001 * 117.49758 * 144.97304 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.3208 -1.8872 -1.1760 6 7 2.1611 -0.0381 -2.3915 7 6 2.6490 -0.7288 -3.5877 8 6 1.8122 1.3832 -2.4574 9 16 2.1347 -0.8552 1.4811 10 8 3.5247 -0.6206 1.6597 11 8 1.5982 -2.1691 1.5522 12 7 1.4200 -0.0536 2.7417 13 6 -0.0406 0.0169 2.8311 14 6 -0.4571 0.1218 4.2996 15 6 -0.0638 -1.0425 5.1716 16 1 0.8599 -1.0109 5.7303 17 6 -0.8859 -2.1459 5.2606 18 7 -2.0458 -2.1533 4.6409 19 14 -0.3520 -3.6301 6.2613 20 1 -0.1415 -3.2248 7.6743 21 1 -1.4052 -4.6751 6.1972 22 1 0.9153 -4.1708 5.7073 23 6 -0.4567 1.5131 4.9363 24 6 -1.7824 0.8208 4.6098 25 1 -0.3633 0.3757 -0.9566 26 1 -0.3634 -1.0163 0.1529 27 1 -0.3633 0.6405 0.8036 28 1 1.8047 -1.1480 -4.1350 29 1 3.1797 -0.0214 -4.2248 30 1 3.3256 -1.5312 -3.2934 31 1 1.4705 1.7192 -1.4783 32 1 2.6887 1.9591 -2.7542 33 1 1.0172 1.5286 -3.1888 34 1 1.9685 0.3692 3.4208 35 1 -0.4752 -0.8819 2.3935 36 1 -0.3959 0.8933 2.2892 37 1 -2.6556 -2.8979 4.7619 38 1 -0.1720 1.5861 5.9859 39 1 -0.1602 2.3537 4.3089 40 1 -2.3572 1.2062 3.7677 41 1 -2.3699 0.4381 5.4443 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331763328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:35 Heat of formation + Delta-G solvation = -63.746107 kcal Electronic energy + Delta-G solvation = -24402.261237 eV Core-core repulsion = 20832.299843 eV Total energy + Delta-G solvation = -3569.961394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.22702 -37.21238 -36.59528 -35.92475 -35.37952 -34.01928 -32.83815 -31.84820 -28.38676 -26.72200 -25.97115 -25.04572 -24.16685 -21.15805 -20.21040 -19.35437 -18.65036 -17.85377 -17.03892 -16.81867 -16.19196 -15.97303 -15.45290 -15.24862 -14.58511 -14.32839 -14.07738 -13.75666 -13.57212 -13.49722 -13.03532 -12.89120 -12.73048 -12.38865 -12.21691 -12.19563 -11.98326 -11.72947 -11.55265 -11.43940 -11.17153 -10.85930 -10.82940 -10.47144 -10.43887 -10.22031 -10.15097 -9.57820 -9.10617 -9.06085 -8.60072 -8.37155 -8.13648 -5.98934 -4.05664 0.53553 2.25974 2.62373 3.26033 3.38927 3.43925 3.50016 3.98343 4.22823 4.32287 4.48042 4.65579 4.86176 4.96362 4.99322 5.05981 5.25838 5.28070 5.30799 5.31770 5.41606 5.50516 5.55032 5.84309 5.96596 6.05691 6.17250 6.24079 6.33751 6.46915 6.68745 6.88405 6.95863 7.07200 7.37879 7.56874 7.68033 7.74607 7.92346 8.41733 8.93998 9.61391 11.08863 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.020524 B = 0.004844 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.957032 B = 5778.934914 C = 6300.380697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.640 4.640 3 H 0.152 0.848 4 C 0.543 3.457 5 O -0.524 6.524 6 N -0.613 5.613 7 C 0.083 3.917 8 C 0.068 3.932 9 S 2.636 3.364 10 O -0.967 6.967 11 O -0.918 6.918 12 N -1.092 6.092 13 C 0.152 3.848 14 C 0.032 3.968 15 C -0.492 4.492 16 H 0.059 0.941 17 C 0.075 3.925 18 N -0.879 5.879 19 Si 0.887 3.113 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.213 4.213 24 C -0.144 4.144 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.416 0.584 35 H 0.084 0.916 36 H 0.040 0.960 37 H 0.261 0.739 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.149 10.722 -14.601 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.746 4.746 3 H 0.170 0.830 4 C 0.328 3.672 5 O -0.400 6.400 6 N -0.347 5.347 7 C -0.060 4.060 8 C -0.075 4.075 9 S 2.721 3.279 10 O -0.957 6.957 11 O -0.907 6.907 12 N -0.854 5.854 13 C 0.027 3.973 14 C 0.030 3.970 15 C -0.530 4.530 16 H 0.077 0.923 17 C -0.129 4.129 18 N -0.516 5.516 19 Si 0.715 3.285 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.250 4.250 24 C -0.182 4.182 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.121 0.879 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.251 0.749 35 H 0.103 0.897 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.622 9.130 -14.827 18.015 hybrid contribution -0.025 0.131 0.330 0.356 sum 4.597 9.261 -14.496 17.806 Atomic orbital electron populations 1.22039 0.87094 1.06056 1.05433 1.31144 1.09825 1.15724 1.17923 0.83010 1.19473 0.77391 0.86566 0.83746 1.90875 1.49495 1.14913 1.84705 1.47573 1.65846 1.11309 1.09976 1.21709 0.99974 0.98164 0.86117 1.22012 1.01175 0.80268 1.03997 1.04561 0.73548 0.75213 0.74610 1.93539 1.31097 1.86395 1.84664 1.93628 1.79567 1.33465 1.84045 1.55212 1.16114 1.74949 1.39100 1.21312 0.77200 0.99392 0.99416 1.18996 0.97147 0.90233 0.90666 1.20280 1.06622 0.99242 1.26851 0.92292 1.24921 0.94968 0.97941 0.95033 1.69939 1.08099 1.31853 1.41662 0.86731 0.78867 0.82734 0.80198 1.20402 1.21222 1.19785 1.23054 1.04530 0.96874 1.00563 1.22483 0.90460 1.03334 1.01959 0.90869 0.89577 0.87886 0.92326 0.90894 0.90082 0.89553 0.91553 0.91500 0.74896 0.89747 0.94220 0.92914 0.90379 0.91734 0.91916 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 7.64 37.16 0.28 -1.56 16 2 C -0.64 -8.70 2.53 -27.88 -0.07 -8.77 16 3 H 0.15 1.43 6.32 -51.93 -0.33 1.11 16 4 C 0.54 8.18 6.78 -10.98 -0.07 8.11 16 5 O -0.52 -10.11 15.31 -3.03 -0.05 -10.16 16 6 N -0.61 -6.71 3.27 -189.51 -0.62 -7.33 16 7 C 0.08 0.74 10.48 59.84 0.63 1.37 16 8 C 0.07 0.46 10.23 59.85 0.61 1.08 16 9 S 2.64 49.70 4.56 -107.50 -0.49 49.21 16 10 O -0.97 -19.86 18.08 -57.54 -1.04 -20.90 16 11 O -0.92 -21.83 16.93 -62.39 -1.06 -22.89 16 12 N -1.09 -19.82 5.64 -10.61 -0.06 -19.88 16 13 C 0.15 2.96 4.26 -4.04 -0.02 2.94 16 14 C 0.03 0.71 1.58 -155.66 -0.25 0.47 16 15 C -0.49 -13.03 8.68 -34.44 -0.30 -13.33 16 16 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 17 C 0.08 2.06 5.42 -17.82 -0.10 1.96 16 18 N -0.88 -24.45 12.58 55.43 0.70 -23.75 16 19 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.27 -6.92 7.11 56.52 0.40 -6.51 16 23 C -0.21 -4.16 9.95 -26.69 -0.27 -4.43 16 24 C -0.14 -3.08 9.09 -26.69 -0.24 -3.32 16 25 H 0.07 0.70 7.70 -51.93 -0.40 0.30 16 26 H 0.09 1.27 7.68 -51.92 -0.40 0.87 16 27 H 0.10 1.17 4.49 -51.93 -0.23 0.94 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 30 H 0.08 0.86 7.42 -51.93 -0.39 0.47 16 31 H 0.09 0.53 5.07 -51.93 -0.26 0.27 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.42 7.10 8.74 -34.47 -0.30 6.80 16 35 H 0.08 1.84 6.95 -51.93 -0.36 1.48 16 36 H 0.04 0.62 5.89 -51.93 -0.31 0.31 16 37 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 38 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.09 2.07 8.12 -51.93 -0.42 1.65 16 LS Contribution 345.34 15.07 5.20 5.20 Total: -1.00 -35.83 345.34 -8.12 -43.95 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.90 Total: 5.17 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 0.21 Total: -15.49 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.02 Total: -50.96 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -2.14 Total: -53.95 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 49.70 SS G_CDS: -0.49 Total: 49.21 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.83 -8.12 -43.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331763328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.792 kcal (2) G-P(sol) polarization free energy of solvation -35.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds