Wall clock time and date at job start Fri Apr 10 2020 14:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47322 * 2 1 4 4 C 1.50705 * 109.47251 * 239.99997 * 2 1 3 5 5 O 1.21288 * 119.99850 * 265.00100 * 4 2 1 6 6 N 1.34777 * 120.00159 * 85.00079 * 4 2 1 7 7 C 1.46496 * 120.00142 * 180.02562 * 6 4 2 8 8 C 1.46497 * 119.99746 * 359.97438 * 6 4 2 9 9 S 1.81399 * 109.47227 * 120.00155 * 2 1 3 10 10 O 1.42095 * 110.54410 * 192.69468 * 9 2 1 11 11 O 1.42099 * 110.54339 * 55.93594 * 9 2 1 12 12 N 1.65602 * 104.44580 * 304.31676 * 9 2 1 13 13 C 1.46504 * 120.00066 * 59.16423 * 12 9 2 14 14 C 1.53000 * 109.47247 * 151.07417 * 13 12 9 15 15 C 1.50692 * 115.55044 * 298.49668 * 14 13 12 16 16 H 1.07999 * 120.00452 * 93.66836 * 15 14 13 17 17 C 1.37888 * 119.99913 * 273.39605 * 15 14 13 18 18 N 1.31515 * 119.99733 * 356.41550 * 17 15 14 19 19 Si 1.86797 * 119.99998 * 176.41281 * 17 15 14 20 20 H 1.48501 * 109.47306 * 60.00045 * 19 17 15 21 21 H 1.48498 * 109.47137 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47157 * 299.99955 * 19 17 15 23 23 C 1.53004 * 117.49629 * 84.16334 * 14 13 12 24 24 C 1.53004 * 117.49899 * 152.82169 * 14 13 12 25 25 H 1.09005 * 109.46728 * 68.55890 * 1 2 3 26 26 H 1.09009 * 109.47167 * 188.55450 * 1 2 3 27 27 H 1.08998 * 109.47245 * 308.55665 * 1 2 3 28 28 H 1.08998 * 109.47346 * 89.99945 * 7 6 4 29 29 H 1.08998 * 109.47513 * 210.00124 * 7 6 4 30 30 H 1.09004 * 109.46887 * 329.99945 * 7 6 4 31 31 H 1.09003 * 109.47333 * 359.97438 * 8 6 4 32 32 H 1.09001 * 109.47138 * 120.00371 * 8 6 4 33 33 H 1.09002 * 109.47011 * 240.00188 * 8 6 4 34 34 H 0.96996 * 119.99883 * 239.15734 * 12 9 2 35 35 H 1.09000 * 109.47233 * 31.07086 * 13 12 9 36 36 H 1.09003 * 109.46573 * 271.06951 * 13 12 9 37 37 H 0.96997 * 119.99443 * 185.01380 * 18 17 15 38 38 H 1.09004 * 117.49513 * 214.99770 * 23 14 13 39 39 H 1.09003 * 117.50196 * 0.02846 * 23 14 13 40 40 H 1.09001 * 117.49523 * 359.97438 * 24 14 13 41 41 H 1.09001 * 117.49758 * 144.97304 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.3208 -1.8872 -1.1760 6 7 2.1611 -0.0381 -2.3915 7 6 2.6490 -0.7288 -3.5877 8 6 1.8122 1.3832 -2.4574 9 16 2.1347 -0.8552 1.4811 10 8 3.5247 -0.6206 1.6597 11 8 1.5982 -2.1691 1.5522 12 7 1.4200 -0.0536 2.7417 13 6 -0.0406 0.0169 2.8311 14 6 -0.4571 0.1218 4.2996 15 6 -0.0638 -1.0425 5.1716 16 1 0.8599 -1.0109 5.7303 17 6 -0.8859 -2.1459 5.2606 18 7 -2.0458 -2.1533 4.6409 19 14 -0.3520 -3.6301 6.2613 20 1 -0.1415 -3.2248 7.6743 21 1 -1.4052 -4.6751 6.1972 22 1 0.9153 -4.1708 5.7073 23 6 -0.4567 1.5131 4.9363 24 6 -1.7824 0.8208 4.6098 25 1 -0.3633 0.3757 -0.9566 26 1 -0.3634 -1.0163 0.1529 27 1 -0.3633 0.6405 0.8036 28 1 1.8047 -1.1480 -4.1350 29 1 3.1797 -0.0214 -4.2248 30 1 3.3256 -1.5312 -3.2934 31 1 1.4705 1.7192 -1.4783 32 1 2.6887 1.9591 -2.7542 33 1 1.0172 1.5286 -3.1888 34 1 1.9685 0.3692 3.4208 35 1 -0.4752 -0.8819 2.3935 36 1 -0.3959 0.8933 2.2892 37 1 -2.6556 -2.8979 4.7619 38 1 -0.1720 1.5861 5.9859 39 1 -0.1602 2.3537 4.3089 40 1 -2.3572 1.2062 3.7677 41 1 -2.3699 0.4381 5.4443 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331763328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:35 Heat of formation + Delta-G solvation = -92.437092 kcal Electronic energy + Delta-G solvation = -24403.505371 eV Core-core repulsion = 20832.299843 eV Total energy + Delta-G solvation = -3571.205528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.29287 -38.83964 -38.17428 -37.05771 -36.82605 -35.35861 -34.14423 -33.82417 -29.04386 -27.81241 -27.56677 -26.65791 -25.25946 -22.77404 -21.44004 -21.02551 -19.97913 -18.97241 -18.59100 -18.00191 -17.81719 -17.06183 -16.81386 -16.54131 -16.42805 -15.86552 -15.33589 -15.11162 -14.81109 -14.71430 -14.08260 -13.98837 -13.77718 -13.50112 -13.42293 -13.23321 -13.21040 -13.08662 -13.06507 -12.89501 -12.86575 -12.78836 -12.73496 -12.38890 -11.87543 -11.68142 -11.35712 -11.27003 -10.91291 -10.33868 -10.12480 -9.88853 -9.81232 -8.06791 -6.14352 -0.89271 1.16282 1.35934 1.42410 1.45928 1.61679 1.96826 2.43976 2.76982 3.09274 3.13542 3.23808 3.62603 3.71730 3.75799 4.23012 4.27412 4.32887 4.40358 4.47880 4.51840 4.62066 4.70654 4.72753 4.76106 4.81883 4.87186 4.94458 5.14120 5.17269 5.29820 5.36672 5.43333 5.74628 5.84906 5.88938 5.99809 6.27071 6.47942 6.72593 6.90258 7.52813 8.99585 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.020524 B = 0.004844 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.957032 B = 5778.934914 C = 6300.380697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.607 4.607 3 H 0.206 0.794 4 C 0.526 3.474 5 O -0.583 6.583 6 N -0.602 5.602 7 C 0.074 3.926 8 C 0.053 3.947 9 S 2.627 3.373 10 O -0.995 6.995 11 O -0.986 6.986 12 N -1.090 6.090 13 C 0.159 3.841 14 C -0.006 4.006 15 C -0.501 4.501 16 H 0.045 0.955 17 C 0.030 3.970 18 N -0.899 5.899 19 Si 0.923 3.077 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.289 1.289 23 C -0.181 4.181 24 C -0.148 4.148 25 H 0.112 0.888 26 H 0.053 0.947 27 H 0.118 0.882 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.421 0.579 35 H 0.052 0.948 36 H 0.094 0.906 37 H 0.258 0.742 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 14.557 -16.730 22.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.719 4.719 3 H 0.223 0.777 4 C 0.312 3.688 5 O -0.464 6.464 6 N -0.333 5.333 7 C -0.067 4.067 8 C -0.088 4.088 9 S 2.720 3.280 10 O -0.985 6.985 11 O -0.976 6.976 12 N -0.852 5.852 13 C 0.034 3.966 14 C -0.007 4.007 15 C -0.539 4.539 16 H 0.064 0.936 17 C -0.170 4.170 18 N -0.537 5.537 19 Si 0.750 3.250 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.215 1.215 23 C -0.218 4.218 24 C -0.187 4.187 25 H 0.131 0.869 26 H 0.073 0.927 27 H 0.136 0.864 28 H 0.085 0.915 29 H 0.130 0.870 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.256 0.744 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.448 12.986 -16.902 21.774 hybrid contribution 0.070 -0.957 0.866 1.293 sum 4.518 12.029 -16.036 20.549 Atomic orbital electron populations 1.22130 0.85695 1.04775 1.08153 1.30736 1.10715 1.17075 1.13420 0.77718 1.19762 0.77617 0.86159 0.85269 1.90863 1.52372 1.17463 1.85663 1.47769 1.63698 1.12948 1.08879 1.21924 1.00283 0.98725 0.85809 1.22449 1.03290 0.77474 1.05558 1.04258 0.72940 0.74637 0.76165 1.93491 1.32617 1.86601 1.85802 1.93554 1.80251 1.38030 1.85725 1.54980 1.15672 1.74650 1.39850 1.21219 0.77478 1.00274 0.97636 1.19128 0.98847 0.90680 0.92094 1.20645 1.05677 1.00757 1.26821 0.93642 1.25451 0.95463 0.99770 0.96343 1.69996 1.08612 1.32163 1.42919 0.86163 0.77769 0.81098 0.79954 1.19112 1.20813 1.21504 1.23066 1.01966 0.96159 1.00623 1.22413 0.90634 1.03758 1.01850 0.86938 0.92745 0.86379 0.91463 0.87001 0.92545 0.88505 0.89124 0.89013 0.74354 0.92953 0.88839 0.93319 0.91244 0.87426 0.89332 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 7.64 71.98 0.55 -2.69 16 2 C -0.61 -14.90 2.53 29.85 0.08 -14.83 16 3 H 0.21 2.77 6.32 -2.39 -0.02 2.75 16 4 C 0.53 15.08 6.78 87.66 0.59 15.67 16 5 O -0.58 -23.18 15.31 5.15 0.08 -23.10 16 6 N -0.60 -11.12 3.27 -871.88 -2.85 -13.98 16 7 C 0.07 1.15 10.48 127.77 1.34 2.49 16 8 C 0.05 0.41 10.23 127.77 1.31 1.72 16 9 S 2.63 100.02 4.56 -56.49 -0.26 99.76 16 10 O -1.00 -41.46 18.08 -127.65 -2.31 -43.77 16 11 O -0.99 -49.75 16.93 -123.01 -2.08 -51.83 16 12 N -1.09 -38.55 5.64 -187.48 -1.06 -39.61 16 13 C 0.16 5.93 4.26 86.38 0.37 6.30 16 14 C -0.01 -0.25 1.58 -52.93 -0.08 -0.33 16 15 C -0.50 -26.96 8.68 25.60 0.22 -26.74 16 16 H 0.05 2.48 7.82 -2.91 -0.02 2.46 16 17 C 0.03 1.71 5.42 84.66 0.46 2.17 16 18 N -0.90 -51.25 12.58 21.45 0.27 -50.98 16 19 Si 0.92 46.13 29.54 68.60 2.03 48.16 16 20 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 22 H -0.29 -15.05 7.11 99.48 0.71 -14.35 16 23 C -0.18 -6.52 9.95 30.62 0.30 -6.22 16 24 C -0.15 -6.09 9.09 30.62 0.28 -5.81 16 25 H 0.11 1.60 7.70 -2.38 -0.02 1.58 16 26 H 0.05 1.58 7.68 -2.38 -0.02 1.56 16 27 H 0.12 2.15 4.49 -2.39 -0.01 2.14 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.11 0.85 8.07 -2.39 -0.02 0.83 16 30 H 0.06 1.17 7.42 -2.38 -0.02 1.16 16 31 H 0.10 0.55 5.07 -2.39 -0.01 0.54 16 32 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.42 13.93 8.74 -96.75 -0.85 13.09 16 35 H 0.05 2.30 6.95 -2.39 -0.02 2.28 16 36 H 0.09 2.46 5.89 -2.39 -0.01 2.44 16 37 H 0.26 14.32 8.32 -92.71 -0.77 13.55 16 38 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 40 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.05 2.59 8.12 -2.39 -0.02 2.57 16 Total: -1.00 -85.18 345.34 -0.57 -85.75 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.20 Total: 17.87 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 5.42 Total: -28.27 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -3.64 Total: -104.57 kcal Atomic # 8 Polarization: -114.39 SS G_CDS: -4.31 Total: -118.70 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Atomic # 16 Polarization: 100.02 SS G_CDS: -0.26 Total: 99.76 kcal Total: -85.18 -0.57 -85.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331763328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.689 kcal (2) G-P(sol) polarization free energy of solvation -85.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds