Wall clock time and date at job start Fri Apr 10 2020 14:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46610 * 2 1 4 4 C 1.50698 * 109.47159 * 240.00008 * 2 1 3 5 5 O 1.21281 * 120.00275 * 255.22286 * 4 2 1 6 6 N 1.34777 * 119.99938 * 75.22709 * 4 2 1 7 7 C 1.46502 * 119.99979 * 184.42250 * 6 4 2 8 8 C 1.46505 * 120.00182 * 4.41313 * 6 4 2 9 9 H 1.09001 * 109.64059 * 354.35568 * 8 6 4 10 10 C 1.53878 * 109.64289 * 114.64870 * 8 6 4 11 11 C 1.55050 * 106.62394 * 167.03497 * 10 8 6 12 12 S 1.83288 * 102.56331 * 317.56644 * 11 10 8 13 13 O 1.42098 * 109.35594 * 269.80934 * 12 11 10 14 14 O 1.42106 * 109.35052 * 136.60908 * 12 11 10 15 15 C 1.54160 * 109.64788 * 233.92523 * 8 6 4 16 16 N 1.46492 * 109.47280 * 119.99887 * 2 1 3 17 17 C 1.46503 * 120.00145 * 59.72321 * 16 2 1 18 18 C 1.36940 * 120.00493 * 240.00526 * 16 2 1 19 19 H 1.08004 * 119.99548 * 333.65488 * 18 16 2 20 20 C 1.38809 * 120.00810 * 153.65303 * 18 16 2 21 21 N 1.31620 * 119.99424 * 355.42774 * 20 18 16 22 22 Si 1.86802 * 120.00385 * 175.42371 * 20 18 16 23 23 H 1.48492 * 109.46854 * 90.00080 * 22 20 18 24 24 H 1.48494 * 109.47095 * 210.00554 * 22 20 18 25 25 H 1.48502 * 109.46603 * 330.00221 * 22 20 18 26 26 H 1.08996 * 109.46916 * 295.96991 * 1 2 3 27 27 H 1.08997 * 109.46878 * 55.96812 * 1 2 3 28 28 H 1.09003 * 109.46723 * 175.96789 * 1 2 3 29 29 H 1.09005 * 109.47111 * 93.70828 * 7 6 4 30 30 H 1.09000 * 109.47132 * 213.70577 * 7 6 4 31 31 H 1.08999 * 109.46836 * 333.70653 * 7 6 4 32 32 H 1.09004 * 110.02710 * 286.32605 * 10 8 6 33 33 H 1.09000 * 110.02707 * 47.74244 * 10 8 6 34 34 H 1.08994 * 110.78865 * 199.29808 * 11 10 8 35 35 H 1.08996 * 110.78787 * 75.83328 * 11 10 8 36 36 H 1.09001 * 110.32102 * 331.13729 * 15 8 6 37 37 H 1.08997 * 110.32152 * 93.34067 * 15 8 6 38 38 H 1.09000 * 109.47498 * 264.72134 * 17 16 2 39 39 H 1.09003 * 109.46987 * 24.71865 * 17 16 2 40 40 H 1.08996 * 109.47174 * 144.71927 * 17 16 2 41 41 H 0.97002 * 119.99474 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.4871 -1.8311 -1.1405 6 7 1.9764 -0.1002 -2.4309 7 6 2.3740 -0.8252 -3.6403 8 6 1.5178 1.2879 -2.5264 9 1 1.1724 1.6277 -1.5500 10 6 2.6748 2.1833 -3.0033 11 6 2.0480 3.5456 -3.3975 12 16 0.5347 3.0417 -4.3006 13 8 0.8354 2.9018 -5.6823 14 8 -0.5528 3.8592 -3.8900 15 6 0.3655 1.3841 -3.5460 16 7 2.0184 -0.6905 1.1961 17 6 1.6595 -2.0914 1.4311 18 6 2.8056 -0.0251 2.0976 19 1 3.4105 0.8090 1.7738 20 6 2.8262 -0.4224 3.4274 21 7 2.0227 -1.3794 3.8407 22 14 3.9942 0.4011 4.6304 23 1 3.3228 1.5723 5.2490 24 1 4.3771 -0.5666 5.6896 25 1 5.2110 0.8522 3.9086 26 1 -0.3633 0.4500 0.9239 27 1 -0.3633 0.5751 -0.8516 28 1 -0.3633 -1.0252 -0.0723 29 1 1.4945 -1.2781 -4.0981 30 1 2.8340 -0.1321 -4.3446 31 1 3.0893 -1.6047 -3.3779 32 1 3.3952 2.3231 -2.1974 33 1 3.1634 1.7332 -3.8675 34 1 2.7186 4.1060 -4.0488 35 1 1.7940 4.1257 -2.5104 36 1 0.4674 0.6099 -4.3066 37 1 -0.5959 1.2947 -3.0403 38 1 0.7871 -2.1386 2.0828 39 1 1.4290 -2.5718 0.4802 40 1 2.4953 -2.6060 1.9050 41 1 2.0373 -1.6573 4.7700 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340795504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:38 Heat of formation + Delta-G solvation = -61.475195 kcal Electronic energy + Delta-G solvation = -24451.537928 eV Core-core repulsion = 20881.675009 eV Total energy + Delta-G solvation = -3569.862920 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.02349 -37.38602 -37.21270 -36.27198 -35.47308 -33.38527 -32.18301 -29.88961 -29.43696 -27.20780 -25.91142 -25.20782 -23.90767 -21.98811 -21.03769 -19.15011 -18.79281 -17.45110 -17.02827 -16.80140 -16.07963 -15.95746 -15.57539 -15.09355 -14.75714 -14.46121 -14.24515 -13.80239 -13.78549 -13.23331 -12.87179 -12.69467 -12.56170 -12.42067 -12.34413 -12.31315 -12.19601 -12.04657 -11.76025 -11.37337 -11.29541 -11.05011 -10.91027 -10.79374 -10.71895 -10.63067 -10.25463 -10.13596 -9.92377 -9.05405 -8.61543 -8.55034 -6.76969 -5.74308 -3.27133 -0.27666 2.18206 3.01522 3.12744 3.29913 3.34750 3.40865 3.42422 3.73071 4.00854 4.21574 4.32906 4.43589 4.49628 4.58562 4.87180 5.14444 5.17393 5.28850 5.34098 5.38300 5.45778 5.48860 5.55319 5.68323 5.79644 5.88798 5.92486 6.16488 6.37354 6.57852 6.77105 7.07486 7.49736 7.62236 7.74759 7.88696 8.35229 8.66961 9.20114 9.79477 10.29878 11.28023 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.004157 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.506000 B = 6733.842792 C = 7223.122152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.157 3.843 3 H 0.085 0.915 4 C 0.497 3.503 5 O -0.516 6.516 6 N -0.616 5.616 7 C 0.074 3.926 8 C 0.146 3.854 9 H 0.122 0.878 10 C -0.137 4.137 11 C -0.584 4.584 12 S 2.390 3.610 13 O -0.937 6.937 14 O -0.936 6.936 15 C -0.611 4.611 16 N -0.574 5.574 17 C 0.166 3.834 18 C -0.265 4.265 19 H 0.066 0.934 20 C 0.010 3.990 21 N -0.902 5.902 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.280 1.280 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.026 0.974 39 H 0.015 0.985 40 H 0.039 0.961 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.037 8.296 -16.007 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.043 3.957 3 H 0.102 0.898 4 C 0.284 3.716 5 O -0.389 6.389 6 N -0.353 5.353 7 C -0.069 4.069 8 C 0.039 3.961 9 H 0.140 0.860 10 C -0.176 4.176 11 C -0.714 4.714 12 S 2.573 3.427 13 O -0.934 6.934 14 O -0.933 6.933 15 C -0.741 4.741 16 N -0.295 5.295 17 C 0.022 3.978 18 C -0.394 4.394 19 H 0.084 0.916 20 C -0.189 4.189 21 N -0.545 5.545 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.205 1.205 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.126 0.874 33 H 0.110 0.890 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.044 0.956 39 H 0.034 0.966 40 H 0.058 0.942 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.338 7.985 -16.389 18.380 hybrid contribution 1.088 -0.044 1.180 1.606 sum -1.251 7.942 -15.208 17.203 Atomic orbital electron populations 1.22304 0.96041 1.01947 1.01492 1.20285 0.93576 0.95754 0.86082 0.89763 1.23005 0.77072 0.87181 0.84329 1.90625 1.43737 1.19578 1.84961 1.48174 1.67678 1.11760 1.07704 1.21612 1.00530 0.97608 0.87108 1.21546 0.90456 0.83936 1.00129 0.86049 1.22665 0.99416 0.90660 1.04881 1.30584 1.19897 1.05803 1.15113 1.09031 0.78166 0.78761 0.76783 1.93624 1.84965 1.85995 1.28829 1.93632 1.50678 1.65134 1.83839 1.31003 1.08002 1.23280 1.11850 1.43682 1.57609 1.08781 1.19424 1.20855 0.99280 0.82676 0.94990 1.19162 1.18394 1.13825 0.88006 0.91633 1.25113 0.98409 0.98518 0.96858 1.70089 1.38638 1.30360 1.15450 0.86223 0.80397 0.78692 0.80973 1.21256 1.21531 1.20532 0.90947 0.93685 0.92698 0.93093 0.91780 0.89987 0.87428 0.89011 0.84165 0.83847 0.83795 0.83504 0.95614 0.96631 0.94218 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 8.84 37.16 0.33 -2.30 16 2 C 0.16 3.01 2.25 -69.09 -0.16 2.85 16 3 H 0.08 1.46 6.56 -51.93 -0.34 1.12 16 4 C 0.50 9.06 6.83 -10.99 -0.08 8.99 16 5 O -0.52 -11.55 13.57 5.56 0.08 -11.48 16 6 N -0.62 -8.01 2.78 -172.71 -0.48 -8.49 16 7 C 0.07 0.82 9.23 59.85 0.55 1.37 16 8 C 0.15 1.38 2.17 -66.86 -0.15 1.23 16 9 H 0.12 1.14 4.63 -51.93 -0.24 0.90 16 10 C -0.14 -1.00 5.96 -25.19 -0.15 -1.15 16 11 C -0.58 -3.30 7.31 38.24 0.28 -3.02 16 12 S 2.39 18.82 6.11 -107.50 -0.66 18.16 16 13 O -0.94 -10.35 18.15 -57.71 -1.05 -11.39 16 14 O -0.94 -10.68 18.15 -57.71 -1.05 -11.73 16 15 C -0.61 -4.55 6.83 37.76 0.26 -4.29 16 16 N -0.57 -14.35 2.69 -174.81 -0.47 -14.82 16 17 C 0.17 4.33 7.54 59.85 0.45 4.78 16 18 C -0.26 -7.11 9.57 -15.06 -0.14 -7.26 16 19 H 0.07 1.69 7.82 -52.48 -0.41 1.28 16 20 C 0.01 0.28 5.26 -17.43 -0.09 0.19 16 21 N -0.90 -26.08 10.47 55.49 0.58 -25.50 16 22 Si 0.91 21.41 29.56 -169.99 -5.02 16.39 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.04 0.56 6.34 -51.93 -0.33 0.23 16 28 H 0.05 0.97 7.80 -51.93 -0.41 0.57 16 29 H 0.05 0.50 7.74 -51.93 -0.40 0.10 16 30 H 0.06 0.52 6.60 -51.93 -0.34 0.17 16 31 H 0.08 1.08 7.26 -51.93 -0.38 0.70 16 32 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.59 6.62 -51.93 -0.34 0.24 16 34 H 0.14 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.14 0.97 6.60 -51.93 -0.34 0.63 16 37 H 0.15 0.95 7.82 -51.93 -0.41 0.54 16 38 H 0.03 0.70 7.29 -51.93 -0.38 0.32 16 39 H 0.02 0.38 5.99 -51.93 -0.31 0.07 16 40 H 0.04 1.13 7.35 -51.93 -0.38 0.75 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 331.88 15.07 5.00 5.00 Total: -1.00 -37.49 331.88 -7.80 -45.29 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -5.84 Total: -2.82 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 1.11 Total: 1.38 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.37 Total: -48.80 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -2.02 Total: -34.60 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 18.82 SS G_CDS: -0.66 Total: 18.16 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -37.49 -7.80 -45.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340795504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.185 kcal (2) G-P(sol) polarization free energy of solvation -37.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds