Wall clock time and date at job start Fri Apr 10 2020 14:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46610 * 2 1 4 4 C 1.50698 * 109.47159 * 240.00008 * 2 1 3 5 5 O 1.21281 * 120.00275 * 255.22286 * 4 2 1 6 6 N 1.34777 * 119.99938 * 75.22709 * 4 2 1 7 7 C 1.46502 * 119.99979 * 184.42250 * 6 4 2 8 8 C 1.46505 * 120.00182 * 4.41313 * 6 4 2 9 9 H 1.09001 * 109.64059 * 354.35568 * 8 6 4 10 10 C 1.53878 * 109.64289 * 114.64870 * 8 6 4 11 11 C 1.55050 * 106.62394 * 167.03497 * 10 8 6 12 12 S 1.83288 * 102.56331 * 317.56644 * 11 10 8 13 13 O 1.42098 * 109.35594 * 269.80934 * 12 11 10 14 14 O 1.42106 * 109.35052 * 136.60908 * 12 11 10 15 15 C 1.54160 * 109.64788 * 233.92523 * 8 6 4 16 16 N 1.46492 * 109.47280 * 119.99887 * 2 1 3 17 17 C 1.46503 * 120.00145 * 59.72321 * 16 2 1 18 18 C 1.36940 * 120.00493 * 240.00526 * 16 2 1 19 19 H 1.08004 * 119.99548 * 333.65488 * 18 16 2 20 20 C 1.38809 * 120.00810 * 153.65303 * 18 16 2 21 21 N 1.31620 * 119.99424 * 355.42774 * 20 18 16 22 22 Si 1.86802 * 120.00385 * 175.42371 * 20 18 16 23 23 H 1.48492 * 109.46854 * 90.00080 * 22 20 18 24 24 H 1.48494 * 109.47095 * 210.00554 * 22 20 18 25 25 H 1.48502 * 109.46603 * 330.00221 * 22 20 18 26 26 H 1.08996 * 109.46916 * 295.96991 * 1 2 3 27 27 H 1.08997 * 109.46878 * 55.96812 * 1 2 3 28 28 H 1.09003 * 109.46723 * 175.96789 * 1 2 3 29 29 H 1.09005 * 109.47111 * 93.70828 * 7 6 4 30 30 H 1.09000 * 109.47132 * 213.70577 * 7 6 4 31 31 H 1.08999 * 109.46836 * 333.70653 * 7 6 4 32 32 H 1.09004 * 110.02710 * 286.32605 * 10 8 6 33 33 H 1.09000 * 110.02707 * 47.74244 * 10 8 6 34 34 H 1.08994 * 110.78865 * 199.29808 * 11 10 8 35 35 H 1.08996 * 110.78787 * 75.83328 * 11 10 8 36 36 H 1.09001 * 110.32102 * 331.13729 * 15 8 6 37 37 H 1.08997 * 110.32152 * 93.34067 * 15 8 6 38 38 H 1.09000 * 109.47498 * 264.72134 * 17 16 2 39 39 H 1.09003 * 109.46987 * 24.71865 * 17 16 2 40 40 H 1.08996 * 109.47174 * 144.71927 * 17 16 2 41 41 H 0.97002 * 119.99474 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.4871 -1.8311 -1.1405 6 7 1.9764 -0.1002 -2.4309 7 6 2.3740 -0.8252 -3.6403 8 6 1.5178 1.2879 -2.5264 9 1 1.1724 1.6277 -1.5500 10 6 2.6748 2.1833 -3.0033 11 6 2.0480 3.5456 -3.3975 12 16 0.5347 3.0417 -4.3006 13 8 0.8354 2.9018 -5.6823 14 8 -0.5528 3.8592 -3.8900 15 6 0.3655 1.3841 -3.5460 16 7 2.0184 -0.6905 1.1961 17 6 1.6595 -2.0914 1.4311 18 6 2.8056 -0.0251 2.0976 19 1 3.4105 0.8090 1.7738 20 6 2.8262 -0.4224 3.4274 21 7 2.0227 -1.3794 3.8407 22 14 3.9942 0.4011 4.6304 23 1 3.3228 1.5723 5.2490 24 1 4.3771 -0.5666 5.6896 25 1 5.2110 0.8522 3.9086 26 1 -0.3633 0.4500 0.9239 27 1 -0.3633 0.5751 -0.8516 28 1 -0.3633 -1.0252 -0.0723 29 1 1.4945 -1.2781 -4.0981 30 1 2.8340 -0.1321 -4.3446 31 1 3.0893 -1.6047 -3.3779 32 1 3.3952 2.3231 -2.1974 33 1 3.1634 1.7332 -3.8675 34 1 2.7186 4.1060 -4.0488 35 1 1.7940 4.1257 -2.5104 36 1 0.4674 0.6099 -4.3066 37 1 -0.5959 1.2947 -3.0403 38 1 0.7871 -2.1386 2.0828 39 1 1.4290 -2.5718 0.4802 40 1 2.4953 -2.6060 1.9050 41 1 2.0373 -1.6573 4.7700 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340795504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:20:37 Heat of formation + Delta-G solvation = -90.674299 kcal Electronic energy + Delta-G solvation = -24452.804096 eV Core-core repulsion = 20881.675009 eV Total energy + Delta-G solvation = -3571.129088 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.28026 -38.40699 -38.03134 -37.22819 -37.01122 -34.33037 -33.98351 -31.23403 -30.50756 -28.32129 -27.91119 -25.99625 -25.50567 -23.25342 -22.26792 -19.99126 -19.75834 -18.96929 -18.21975 -17.82280 -17.19651 -16.90599 -16.60157 -16.39592 -16.30322 -15.52482 -15.21728 -14.99833 -14.87791 -14.73789 -14.28742 -13.95174 -13.54817 -13.28759 -13.24650 -13.13197 -13.07406 -13.06458 -12.95239 -12.83603 -12.78315 -12.64203 -12.42106 -12.18057 -12.07358 -11.97099 -11.85546 -11.75114 -11.25345 -10.74764 -10.48821 -9.69768 -8.76226 -7.80243 -5.35434 -0.89293 1.47800 1.50136 1.54908 1.58498 1.72970 2.04125 2.51700 2.66681 3.10501 3.31697 3.34494 3.56222 3.61255 3.67537 3.80475 3.89996 4.05328 4.28699 4.40131 4.46471 4.55551 4.61442 4.67998 4.76844 4.86822 4.93196 4.95764 5.00206 5.05168 5.10549 5.36591 5.42473 5.54549 5.63738 5.72482 6.28017 6.37523 7.13240 7.30136 7.83071 8.30123 9.21855 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.004157 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.506000 B = 6733.842792 C = 7223.122152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.147 3.853 3 H 0.107 0.893 4 C 0.498 3.502 5 O -0.569 6.569 6 N -0.603 5.603 7 C 0.068 3.932 8 C 0.132 3.868 9 H 0.124 0.876 10 C -0.138 4.138 11 C -0.561 4.561 12 S 2.405 3.595 13 O -0.970 6.970 14 O -0.974 6.974 15 C -0.605 4.605 16 N -0.595 5.595 17 C 0.193 3.807 18 C -0.270 4.270 19 H 0.078 0.922 20 C -0.049 4.049 21 N -0.938 5.938 22 Si 0.974 3.026 23 H -0.277 1.277 24 H -0.299 1.299 25 H -0.269 1.269 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.003 0.997 39 H 0.023 0.977 40 H 0.001 0.999 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.495 10.734 -17.664 20.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.036 3.964 3 H 0.125 0.875 4 C 0.286 3.714 5 O -0.446 6.446 6 N -0.337 5.337 7 C -0.074 4.074 8 C 0.026 3.974 9 H 0.142 0.858 10 C -0.177 4.177 11 C -0.693 4.693 12 S 2.592 3.408 13 O -0.967 6.967 14 O -0.971 6.971 15 C -0.736 4.736 16 N -0.316 5.316 17 C 0.048 3.952 18 C -0.400 4.400 19 H 0.095 0.905 20 C -0.244 4.244 21 N -0.584 5.584 22 Si 0.802 3.198 23 H -0.203 1.203 24 H -0.225 1.225 25 H -0.194 1.194 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.182 0.818 35 H 0.180 0.820 36 H 0.173 0.827 37 H 0.177 0.823 38 H 0.021 0.979 39 H 0.041 0.959 40 H 0.020 0.980 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.836 10.502 -18.150 21.050 hybrid contribution 0.934 -0.753 1.554 1.963 sum -0.902 9.749 -16.596 19.269 Atomic orbital electron populations 1.22182 0.94011 1.01694 1.02944 1.20619 0.95053 0.96364 0.84364 0.87533 1.22463 0.76866 0.86459 0.85637 1.90609 1.46353 1.21686 1.85986 1.47968 1.66061 1.13036 1.06643 1.21818 1.00976 0.97961 0.86621 1.21899 0.92140 0.82066 1.01250 0.85820 1.22683 0.98528 0.90998 1.05507 1.30486 1.17797 1.05377 1.15654 1.08435 0.78208 0.78193 0.75996 1.93581 1.85482 1.86391 1.31288 1.93585 1.53120 1.66204 1.84204 1.30954 1.07778 1.23290 1.11529 1.43827 1.58232 1.08404 1.21177 1.20396 0.96615 0.83928 0.94261 1.19594 1.18419 1.13498 0.88467 0.90451 1.25935 1.00324 0.99418 0.98763 1.70270 1.40650 1.32186 1.15294 0.85180 0.78716 0.77517 0.78427 1.20350 1.22548 1.19378 0.92276 0.88868 0.94334 0.91586 0.88074 0.92379 0.87280 0.87664 0.81842 0.82029 0.82727 0.82287 0.97865 0.95854 0.98035 0.94332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 8.84 71.98 0.64 -4.10 16 2 C 0.15 5.48 2.25 44.25 0.10 5.58 16 3 H 0.11 3.42 6.56 -2.39 -0.02 3.40 16 4 C 0.50 17.61 6.83 87.66 0.60 18.20 16 5 O -0.57 -25.72 13.57 -3.03 -0.04 -25.76 16 6 N -0.60 -14.05 2.78 -818.71 -2.28 -16.33 16 7 C 0.07 1.33 9.23 127.77 1.18 2.51 16 8 C 0.13 1.99 2.17 45.68 0.10 2.09 16 9 H 0.12 1.82 4.63 -2.39 -0.01 1.81 16 10 C -0.14 -1.42 5.96 31.59 0.19 -1.23 16 11 C -0.56 -3.83 7.31 72.68 0.53 -3.30 16 12 S 2.41 30.60 6.11 -56.49 -0.34 30.26 16 13 O -0.97 -18.99 18.15 -127.49 -2.31 -21.31 16 14 O -0.97 -20.10 18.15 -127.49 -2.31 -22.42 16 15 C -0.61 -6.79 6.83 72.37 0.49 -6.30 16 16 N -0.59 -30.01 2.69 -706.99 -1.90 -31.92 16 17 C 0.19 10.49 7.54 127.77 0.96 11.45 16 18 C -0.27 -14.53 9.57 84.03 0.80 -13.72 16 19 H 0.08 3.88 7.82 -2.91 -0.02 3.86 16 20 C -0.05 -2.73 5.26 84.86 0.45 -2.29 16 21 N -0.94 -56.05 10.47 21.65 0.23 -55.83 16 22 Si 0.97 44.27 29.56 68.60 2.03 46.30 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.09 2.00 6.34 -2.39 -0.02 1.99 16 28 H 0.04 1.34 7.80 -2.39 -0.02 1.32 16 29 H 0.07 1.12 7.74 -2.38 -0.02 1.10 16 30 H 0.10 1.22 6.60 -2.39 -0.02 1.20 16 31 H 0.06 1.46 7.26 -2.39 -0.02 1.44 16 32 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.10 0.84 6.62 -2.39 -0.02 0.83 16 34 H 0.16 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.16 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.15 1.48 6.60 -2.39 -0.02 1.47 16 37 H 0.16 1.44 7.82 -2.39 -0.02 1.43 16 38 H 0.00 0.18 7.29 -2.39 -0.02 0.16 16 39 H 0.02 1.20 5.99 -2.39 -0.01 1.19 16 40 H 0.00 0.05 7.35 -2.39 -0.02 0.03 16 41 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -84.58 331.88 0.14 -84.44 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: 1.04 Total: 3.67 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 6.04 Total: 8.89 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -3.96 Total: -104.07 kcal Atomic # 8 Polarization: -64.82 SS G_CDS: -4.67 Total: -69.48 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 30.60 SS G_CDS: -0.34 Total: 30.26 kcal Total: -84.58 0.14 -84.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340795504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.236 kcal (2) G-P(sol) polarization free energy of solvation -84.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds