Wall clock time and date at job start Fri Apr 10 2020 14:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47382 * 2 1 4 4 C 1.50696 * 109.47213 * 120.00176 * 2 1 3 5 5 O 1.21288 * 119.99787 * 100.00093 * 4 2 1 6 6 N 1.34768 * 120.00362 * 280.00196 * 4 2 1 7 7 C 1.46500 * 120.00199 * 179.97438 * 6 4 2 8 8 H 1.09004 * 109.49697 * 34.93812 * 7 6 4 9 9 C 1.53048 * 109.49802 * 154.99658 * 7 6 4 10 10 C 1.53041 * 109.52638 * 181.35572 * 9 7 6 11 11 C 1.53188 * 109.31076 * 298.61726 * 10 9 7 12 12 N 1.46928 * 108.76962 * 54.65637 * 11 10 9 13 13 C 1.36935 * 120.62890 * 126.35748 * 12 11 10 14 14 H 1.08007 * 119.99883 * 208.02132 * 13 12 11 15 15 C 1.38804 * 120.00379 * 28.02504 * 13 12 11 16 16 N 1.31627 * 119.99900 * 17.52255 * 15 13 12 17 17 Si 1.86804 * 120.00442 * 197.52078 * 15 13 12 18 18 H 1.48504 * 109.46870 * 94.06524 * 17 15 13 19 19 H 1.48496 * 109.47350 * 214.06992 * 17 15 13 20 20 H 1.48496 * 109.46696 * 334.06866 * 17 15 13 21 21 C 1.46928 * 118.73554 * 306.38522 * 12 11 10 22 22 S 1.81406 * 109.47038 * 240.00552 * 2 1 3 23 23 C 1.81397 * 101.92088 * 59.99929 * 22 2 1 24 24 O 1.42100 * 108.57659 * 174.48808 * 22 2 1 25 25 O 1.42102 * 108.57575 * 305.51424 * 22 2 1 26 26 H 1.08997 * 109.47705 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47202 * 300.00156 * 1 2 3 28 28 H 1.09007 * 109.47298 * 59.99363 * 1 2 3 29 29 H 0.97002 * 119.99870 * 359.97438 * 6 4 2 30 30 H 1.09000 * 109.46031 * 301.36870 * 9 7 6 31 31 H 1.09006 * 109.45707 * 61.34488 * 9 7 6 32 32 H 1.09002 * 109.49496 * 58.58235 * 10 9 7 33 33 H 1.08996 * 109.49872 * 178.67721 * 10 9 7 34 34 H 1.09000 * 109.60114 * 294.86441 * 11 10 9 35 35 H 1.09002 * 109.69796 * 174.50621 * 11 10 9 36 36 H 0.96999 * 119.99791 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.58088 * 293.81594 * 21 12 11 38 38 H 1.09000 * 109.69795 * 173.46555 * 21 12 11 39 39 H 1.08995 * 109.47369 * 60.00383 * 23 22 2 40 40 H 1.09003 * 109.47041 * 180.02562 * 23 22 2 41 41 H 1.09004 * 109.47300 * 300.00136 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.4064 -1.8617 1.1556 6 7 2.0659 -0.0666 2.4139 7 6 2.5537 -0.7574 3.6101 8 1 3.3591 -1.4381 3.3341 9 6 3.0763 0.2706 4.6163 10 6 3.6170 -0.4523 5.8521 11 6 2.4835 -1.2426 6.5132 12 7 1.8795 -2.1311 5.5108 13 6 1.7586 -3.4737 5.7511 14 1 1.7554 -4.1717 4.9268 15 6 1.6401 -3.9378 7.0539 16 7 1.2997 -3.1101 8.0190 17 14 1.9638 -5.7372 7.4376 18 1 3.3770 -5.9065 7.8611 19 1 1.0626 -6.1799 8.5317 20 1 1.7089 -6.5554 6.2249 21 6 1.4082 -1.5515 4.2456 22 16 2.1346 -0.8550 -1.4813 23 6 1.4228 0.1517 -2.8118 24 8 3.5496 -0.7329 -1.5285 25 8 1.5478 -2.1483 -1.5287 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5140 -0.8900 29 1 1.7670 0.8543 2.4736 30 1 3.8751 0.8537 4.1581 31 1 2.2643 0.9356 4.9109 32 1 4.4122 -1.1360 5.5547 33 1 4.0105 0.2789 6.5582 34 1 1.7293 -0.5528 6.8919 35 1 2.8811 -1.8369 7.3359 36 1 1.2166 -3.4345 8.9293 37 1 0.5663 -0.8868 4.4395 38 1 1.0969 -2.3481 3.5700 39 1 1.7893 1.1749 -2.7291 40 1 1.7151 -0.2624 -3.7768 41 1 0.3359 0.1473 -2.7291 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494320015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:50 Heat of formation + Delta-G solvation = -116.787449 kcal Electronic energy + Delta-G solvation = -23920.124023 eV Core-core repulsion = 20347.862584 eV Total energy + Delta-G solvation = -3572.261439 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.24573 -39.11104 -38.03995 -37.00608 -36.07131 -34.81749 -33.88819 -32.37687 -30.51335 -29.96484 -27.29727 -25.99506 -23.96613 -23.73181 -21.75347 -21.14428 -19.72463 -18.80074 -18.61119 -18.09411 -17.09705 -17.00329 -16.80191 -16.35554 -16.22985 -15.80496 -15.40143 -15.07852 -14.94190 -14.27406 -14.14658 -14.07063 -14.03540 -13.91330 -13.45205 -13.25745 -13.11895 -13.06737 -13.04789 -12.90464 -12.78622 -12.60764 -12.15769 -12.00946 -11.95924 -11.79427 -11.64247 -11.48659 -11.35946 -11.05154 -10.66129 -10.25227 -8.73534 -7.94748 -5.40209 -1.04934 1.35313 1.41763 1.42965 1.53151 1.78442 1.90025 2.46647 2.88999 3.05462 3.19247 3.39776 3.68688 3.73138 3.84346 4.00378 4.06692 4.13577 4.20428 4.29008 4.43576 4.51876 4.62343 4.66940 4.77620 4.88195 4.97513 4.99077 5.08062 5.09594 5.20476 5.23353 5.38557 5.50472 5.59757 5.73276 6.32255 6.36309 7.07834 7.10527 7.78534 8.27789 9.10831 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.022459 B = 0.003709 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.421423 B = 7547.610351 C = 8161.641554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.597 4.597 3 H 0.211 0.789 4 C 0.523 3.477 5 O -0.585 6.585 6 N -0.691 5.691 7 C 0.134 3.866 8 H 0.054 0.946 9 C -0.103 4.103 10 C -0.132 4.132 11 C 0.171 3.829 12 N -0.608 5.608 13 C -0.272 4.272 14 H 0.049 0.951 15 C -0.039 4.039 16 N -0.926 5.926 17 Si 0.964 3.036 18 H -0.282 1.282 19 H -0.285 1.285 20 H -0.278 1.278 21 C 0.144 3.856 22 S 2.417 3.583 23 C -0.620 4.620 24 O -0.987 6.987 25 O -0.979 6.979 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.133 0.867 29 H 0.423 0.577 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.009 0.991 35 H 0.053 0.947 36 H 0.254 0.746 37 H 0.028 0.972 38 H 0.026 0.974 39 H 0.170 0.830 40 H 0.144 0.856 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.105 18.536 -19.450 26.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.706 4.706 3 H 0.228 0.772 4 C 0.308 3.692 5 O -0.466 6.466 6 N -0.342 5.342 7 C 0.027 3.973 8 H 0.072 0.928 9 C -0.141 4.141 10 C -0.171 4.171 11 C 0.046 3.954 12 N -0.332 5.332 13 C -0.402 4.402 14 H 0.067 0.933 15 C -0.236 4.236 16 N -0.571 5.571 17 Si 0.791 3.209 18 H -0.208 1.208 19 H -0.211 1.211 20 H -0.203 1.203 21 C 0.017 3.983 22 S 2.602 3.398 23 C -0.775 4.775 24 O -0.984 6.984 25 O -0.976 6.976 26 H 0.075 0.925 27 H 0.116 0.884 28 H 0.151 0.849 29 H 0.261 0.739 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.188 0.812 40 H 0.162 0.838 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.330 16.922 -19.330 25.725 hybrid contribution -0.396 -0.568 0.851 1.097 sum -1.726 16.353 -18.479 24.736 Atomic orbital electron populations 1.21842 0.85538 1.04631 1.08226 1.30610 1.10389 1.16910 1.12730 0.77218 1.20175 0.77343 0.86054 0.85614 1.90893 1.49868 1.19406 1.86410 1.45720 1.64651 1.17158 1.06709 1.21390 0.96519 0.94909 0.84454 0.92773 1.21618 1.01621 0.96477 0.94358 1.22033 0.98336 0.99121 0.97613 1.20730 0.92226 0.91165 0.91242 1.44217 1.69252 1.04420 1.15281 1.19383 1.45017 0.83680 0.92168 0.93331 1.25679 0.99834 1.01532 0.96518 1.70160 1.50543 1.35832 1.00599 0.85321 0.77715 0.80409 0.77418 1.20821 1.21140 1.20274 1.21210 0.94324 0.95244 0.87494 1.07860 0.75241 0.77297 0.79382 1.30088 1.15747 1.16415 1.15225 1.93520 1.30555 1.87723 1.86648 1.93531 1.79471 1.38383 1.86195 0.92527 0.88399 0.84851 0.73873 0.89237 0.89887 0.93741 0.89387 0.97279 0.92829 0.93735 0.95384 0.95522 0.81161 0.83752 0.81660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.92 71.98 0.64 -0.80 16 2 C -0.60 -9.04 3.10 29.85 0.09 -8.95 16 3 H 0.21 0.60 8.14 -2.39 -0.02 0.58 16 4 C 0.52 15.53 6.97 87.66 0.61 16.14 16 5 O -0.59 -25.43 15.31 5.46 0.08 -25.35 16 6 N -0.69 -17.89 5.08 -442.17 -2.25 -20.14 16 7 C 0.13 4.78 2.60 45.07 0.12 4.90 16 8 H 0.05 2.35 7.58 -2.38 -0.02 2.34 16 9 C -0.10 -2.97 5.36 30.62 0.16 -2.80 16 10 C -0.13 -4.72 6.08 30.67 0.19 -4.54 16 11 C 0.17 8.23 5.31 86.36 0.46 8.69 16 12 N -0.61 -32.35 2.99 -699.11 -2.09 -34.44 16 13 C -0.27 -16.29 9.58 84.03 0.81 -15.48 16 14 H 0.05 3.01 7.89 -2.91 -0.02 2.99 16 15 C -0.04 -2.30 4.90 84.86 0.42 -1.88 16 16 N -0.93 -55.48 11.22 21.65 0.24 -55.24 16 17 Si 0.96 47.37 29.59 68.60 2.03 49.40 16 18 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 19 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 20 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 21 C 0.14 6.50 6.09 86.36 0.53 7.03 16 22 S 2.42 49.15 4.32 -56.49 -0.24 48.91 16 23 C -0.62 -2.14 10.17 113.37 1.15 -0.98 16 24 O -0.99 -29.28 18.10 -127.37 -2.31 -31.58 16 25 O -0.98 -31.42 17.40 -122.76 -2.14 -33.56 16 26 H 0.06 0.95 8.06 -2.39 -0.02 0.93 16 27 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.13 -0.14 6.56 -2.38 -0.02 -0.15 16 29 H 0.42 6.49 8.60 -92.71 -0.80 5.70 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 31 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.05 2.94 6.06 -2.39 -0.01 2.92 16 36 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 37 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.03 1.33 7.94 -2.39 -0.02 1.32 16 39 H 0.17 -0.63 8.14 -2.39 -0.02 -0.65 16 40 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.17 -0.40 6.87 -2.39 -0.02 -0.41 16 Total: -1.00 -97.58 343.70 -1.26 -98.84 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: 0.23 Total: 1.84 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 5.17 Total: 1.32 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -4.10 Total: -109.82 kcal Atomic # 8 Polarization: -86.13 SS G_CDS: -4.36 Total: -90.49 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Atomic # 16 Polarization: 49.15 SS G_CDS: -0.24 Total: 48.91 kcal Total: -97.58 -1.26 -98.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494320015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.944 kcal (2) G-P(sol) polarization free energy of solvation -97.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds