Wall clock time and date at job start Fri Apr 10 2020 14:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.45746 * 117.94824 * 2 1 4 4 C 1.52922 * 110.48971 * 160.92767 * 3 2 1 5 5 H 1.09003 * 109.73270 * 290.91909 * 4 3 2 6 6 N 1.46497 * 109.60625 * 170.51263 * 4 3 2 7 7 S 1.65599 * 120.00110 * 95.80916 * 6 4 3 8 8 O 1.42105 * 104.27797 * 181.07392 * 7 6 4 9 9 O 1.42101 * 104.27901 * 308.93100 * 7 6 4 10 10 C 1.81397 * 104.44825 * 65.00280 * 7 6 4 11 11 C 1.53009 * 109.47235 * 179.97438 * 10 7 6 12 12 C 1.52995 * 109.46990 * 179.97438 * 11 10 7 13 13 C 1.50700 * 109.47073 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99821 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00285 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00411 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99871 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47489 * 89.99584 * 17 15 13 19 19 H 1.48501 * 109.46989 * 209.99991 * 17 15 13 20 20 H 1.48501 * 109.47070 * 329.99728 * 17 15 13 21 21 C 1.53342 * 108.67682 * 50.75169 * 4 3 2 22 22 C 1.53069 * 108.42461 * 292.47625 * 21 4 3 23 23 C 1.33361 * 117.94627 * 180.02562 * 2 1 3 24 24 O 1.21278 * 118.24197 * 2.20172 * 23 2 1 25 25 H 1.09002 * 109.47030 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47131 * 299.99439 * 1 2 3 27 27 H 1.09001 * 109.47350 * 59.99992 * 1 2 3 28 28 H 1.09003 * 109.29869 * 40.61469 * 3 2 1 29 29 H 1.08998 * 109.30529 * 281.23699 * 3 2 1 30 30 H 0.96999 * 119.99844 * 275.81641 * 6 4 3 31 31 H 1.09004 * 109.47032 * 299.99803 * 10 7 6 32 32 H 1.09000 * 109.47124 * 60.00075 * 10 7 6 33 33 H 1.08995 * 109.47216 * 300.00010 * 11 10 7 34 34 H 1.09000 * 109.46805 * 60.00123 * 11 10 7 35 35 H 1.08995 * 109.47375 * 300.00190 * 12 11 10 36 36 H 1.09000 * 109.47020 * 60.00531 * 12 11 10 37 37 H 0.96996 * 120.00603 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.67101 * 52.20274 * 21 4 3 39 39 H 1.08995 * 109.67833 * 172.73909 * 21 4 3 40 40 H 1.09004 * 109.40142 * 169.02727 * 22 21 4 41 41 H 1.09001 * 109.39687 * 288.85185 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2875 0.0000 4 6 3.5949 1.1258 0.4681 5 1 3.6127 0.8738 1.5284 6 7 4.3254 2.3764 0.2479 7 16 4.4867 3.4694 1.4814 8 8 5.2143 4.5448 0.9040 9 8 3.1618 3.6551 1.9606 10 6 5.4964 2.6095 2.7190 11 6 5.7190 3.5274 3.9228 12 6 6.5702 2.8018 4.9667 13 6 6.7899 3.7061 6.1521 14 1 6.3647 4.6988 6.1602 15 6 7.5330 3.2657 7.2268 16 7 7.7244 4.0546 8.2615 17 14 8.2680 1.5484 7.2131 18 1 9.6249 1.5953 6.6116 19 1 8.3608 1.0386 8.6048 20 1 7.4024 0.6459 6.4121 21 6 4.2493 -0.0014 -0.3397 22 6 3.5838 -1.3240 0.0485 23 6 2.0900 -1.1781 -0.0005 24 8 1.4158 -2.1854 -0.0420 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6270 1.9717 0.6697 29 1 2.1399 1.6997 -1.0090 30 1 4.7146 2.5643 -0.6205 31 1 4.9823 1.7042 3.0420 32 1 6.4591 2.3444 2.2818 33 1 6.2333 4.4324 3.5994 34 1 4.7565 3.7929 4.3600 35 1 6.0555 1.8970 5.2900 36 1 7.5327 2.5360 4.5297 37 1 8.2475 3.7449 9.0174 38 1 4.1087 0.1813 -1.4051 39 1 5.3143 -0.0457 -0.1119 40 1 3.8942 -2.1035 -0.6474 41 1 3.8868 -1.5990 1.0588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330875711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:59 Heat of formation + Delta-G solvation = -117.736997 kcal Electronic energy + Delta-G solvation = -23317.424971 eV Core-core repulsion = 19745.122356 eV Total energy + Delta-G solvation = -3572.302615 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.86163 -37.71776 -37.01472 -35.95535 -35.14414 -34.90076 -33.03981 -32.27383 -28.86916 -28.46650 -27.26535 -24.65143 -23.71446 -22.59014 -20.65379 -19.62303 -19.13133 -17.64008 -17.35549 -16.98976 -16.78521 -16.52482 -16.00911 -15.82724 -15.17498 -14.76576 -14.39540 -14.36354 -14.23675 -13.65391 -13.11675 -13.00141 -12.92988 -12.60517 -12.43146 -12.31240 -12.23037 -12.09725 -12.06954 -12.00326 -11.77583 -11.64673 -11.34483 -11.06255 -10.99592 -10.27080 -10.15055 -9.96965 -9.89917 -9.56312 -9.31570 -9.07573 -8.63126 -6.12605 -4.12407 0.21196 2.29848 2.42504 2.77189 3.23033 3.30965 3.32205 3.70318 4.02471 4.08845 4.16492 4.24818 4.36169 4.36754 4.61146 4.81065 4.87801 4.94807 5.02866 5.07377 5.18818 5.21050 5.23721 5.35406 5.37620 5.49508 5.59392 5.61380 5.69491 5.99365 6.05147 6.17297 6.57908 6.61343 7.05824 7.07093 7.19897 7.66081 7.80350 8.42737 8.91524 9.48225 11.00643 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.016638 B = 0.003601 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.526615 B = 7774.047362 C = 8660.758556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.604 5.604 3 C 0.094 3.906 4 C 0.139 3.861 5 H 0.097 0.903 6 N -1.115 6.115 7 S 2.599 3.401 8 O -0.956 6.956 9 O -0.956 6.956 10 C -0.615 4.615 11 C -0.098 4.098 12 C -0.004 4.004 13 C -0.529 4.529 14 H 0.075 0.925 15 C 0.068 3.932 16 N -0.899 5.899 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.266 1.266 21 C -0.132 4.132 22 C -0.134 4.134 23 C 0.513 3.487 24 O -0.556 6.556 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.419 0.581 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.020 0.980 36 H 0.016 0.984 37 H 0.264 0.736 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.989 -8.921 -20.754 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.337 5.337 3 C -0.031 4.031 4 C 0.030 3.970 5 H 0.115 0.885 6 N -0.872 5.872 7 S 2.695 3.305 8 O -0.946 6.946 9 O -0.946 6.946 10 C -0.747 4.747 11 C -0.137 4.137 12 C -0.043 4.043 13 C -0.567 4.567 14 H 0.093 0.907 15 C -0.134 4.134 16 N -0.538 5.538 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.171 4.171 22 C -0.174 4.174 23 C 0.302 3.698 24 O -0.434 6.434 25 H 0.111 0.889 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.114 0.886 29 H 0.092 0.908 30 H 0.253 0.747 31 H 0.145 0.855 32 H 0.150 0.850 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.038 0.962 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.126 0.874 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.705 -8.570 -20.431 24.188 hybrid contribution 1.024 -1.231 -0.026 1.601 sum -8.682 -9.801 -20.456 24.288 Atomic orbital electron populations 1.21824 0.79147 1.04742 1.01762 1.47126 1.07820 1.05824 1.72947 1.22012 0.93009 0.84902 1.03182 1.20940 0.90539 0.84382 1.01092 0.88527 1.55801 1.69029 1.33770 1.28586 1.05425 0.75825 0.74253 0.75042 1.93606 1.74747 1.50609 1.75668 1.93589 1.35395 1.84366 1.81219 1.30608 1.15320 1.13492 1.15245 1.21325 1.02605 0.97106 0.92690 1.19527 0.94458 0.96376 0.93920 1.21122 1.33437 1.01919 1.00190 0.90719 1.25027 0.95749 0.97339 0.95269 1.69904 1.40216 1.36480 1.07183 0.86777 0.79902 0.85170 0.77396 1.20199 1.21231 1.19082 1.22038 1.01361 0.92637 1.01033 1.21650 0.90830 0.99266 1.05652 1.20235 0.91080 0.82797 0.75717 1.90710 1.66344 1.35733 1.50641 0.88908 0.91693 0.92089 0.88562 0.90767 0.74711 0.85547 0.85043 0.90894 0.90894 0.96182 0.96580 0.92570 0.90143 0.89054 0.87406 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 10.48 59.85 0.63 1.18 16 2 N -0.60 -5.44 3.21 -182.86 -0.59 -6.02 16 3 C 0.09 0.73 6.01 -4.49 -0.03 0.70 16 4 C 0.14 0.98 2.63 -67.80 -0.18 0.80 16 5 H 0.10 0.66 7.15 -51.93 -0.37 0.29 16 6 N -1.12 -8.34 5.37 -4.77 -0.03 -8.37 16 7 S 2.60 31.06 5.38 -107.50 -0.58 30.48 16 8 O -0.96 -14.55 18.08 -57.54 -1.04 -15.59 16 9 O -0.96 -14.08 17.39 -57.54 -1.00 -15.08 16 10 C -0.61 -7.71 5.96 37.16 0.22 -7.49 16 11 C -0.10 -1.78 5.16 -26.73 -0.14 -1.91 16 12 C 0.00 -0.09 4.04 -27.89 -0.11 -0.21 16 13 C -0.53 -14.68 9.66 -34.44 -0.33 -15.01 16 14 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 15 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 16 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 17 Si 0.88 20.95 27.47 -169.99 -4.67 16.28 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 21 C -0.13 -0.68 5.57 -26.52 -0.15 -0.83 16 22 C -0.13 -0.89 6.03 -28.10 -0.17 -1.06 16 23 C 0.51 5.22 7.47 -11.87 -0.09 5.13 16 24 O -0.56 -7.75 15.95 5.56 0.09 -7.66 16 25 H 0.09 0.88 6.59 -51.93 -0.34 0.54 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.10 0.85 7.67 -51.93 -0.40 0.45 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.42 2.25 8.80 -34.47 -0.30 1.94 16 31 H 0.13 1.32 7.45 -51.92 -0.39 0.93 16 32 H 0.13 1.38 8.14 -51.92 -0.42 0.95 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 36 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.08 0.35 8.13 -51.93 -0.42 -0.07 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 346.19 15.07 5.22 5.22 Total: -1.00 -37.25 346.19 -8.65 -45.90 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -6.38 Total: -1.81 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -0.44 Total: -16.84 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.16 Total: -40.89 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -1.95 Total: -38.33 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Atomic # 16 Polarization: 31.06 SS G_CDS: -0.58 Total: 30.48 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -37.25 -8.65 -45.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330875711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.841 kcal (2) G-P(sol) polarization free energy of solvation -37.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds