Wall clock time and date at job start Fri Apr 10 2020 14:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.45746 * 117.94824 * 2 1 4 4 C 1.52922 * 110.48971 * 160.92767 * 3 2 1 5 5 H 1.09003 * 109.73270 * 290.91909 * 4 3 2 6 6 N 1.46497 * 109.60625 * 170.51263 * 4 3 2 7 7 S 1.65599 * 120.00110 * 95.80916 * 6 4 3 8 8 O 1.42105 * 104.27797 * 181.07392 * 7 6 4 9 9 O 1.42101 * 104.27901 * 308.93100 * 7 6 4 10 10 C 1.81397 * 104.44825 * 65.00280 * 7 6 4 11 11 C 1.53009 * 109.47235 * 179.97438 * 10 7 6 12 12 C 1.52995 * 109.46990 * 179.97438 * 11 10 7 13 13 C 1.50700 * 109.47073 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99821 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00285 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00411 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99871 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47489 * 89.99584 * 17 15 13 19 19 H 1.48501 * 109.46989 * 209.99991 * 17 15 13 20 20 H 1.48501 * 109.47070 * 329.99728 * 17 15 13 21 21 C 1.53342 * 108.67682 * 50.75169 * 4 3 2 22 22 C 1.53069 * 108.42461 * 292.47625 * 21 4 3 23 23 C 1.33361 * 117.94627 * 180.02562 * 2 1 3 24 24 O 1.21278 * 118.24197 * 2.20172 * 23 2 1 25 25 H 1.09002 * 109.47030 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47131 * 299.99439 * 1 2 3 27 27 H 1.09001 * 109.47350 * 59.99992 * 1 2 3 28 28 H 1.09003 * 109.29869 * 40.61469 * 3 2 1 29 29 H 1.08998 * 109.30529 * 281.23699 * 3 2 1 30 30 H 0.96999 * 119.99844 * 275.81641 * 6 4 3 31 31 H 1.09004 * 109.47032 * 299.99803 * 10 7 6 32 32 H 1.09000 * 109.47124 * 60.00075 * 10 7 6 33 33 H 1.08995 * 109.47216 * 300.00010 * 11 10 7 34 34 H 1.09000 * 109.46805 * 60.00123 * 11 10 7 35 35 H 1.08995 * 109.47375 * 300.00190 * 12 11 10 36 36 H 1.09000 * 109.47020 * 60.00531 * 12 11 10 37 37 H 0.96996 * 120.00603 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.67101 * 52.20274 * 21 4 3 39 39 H 1.08995 * 109.67833 * 172.73909 * 21 4 3 40 40 H 1.09004 * 109.40142 * 169.02727 * 22 21 4 41 41 H 1.09001 * 109.39687 * 288.85185 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2875 0.0000 4 6 3.5949 1.1258 0.4681 5 1 3.6127 0.8738 1.5284 6 7 4.3254 2.3764 0.2479 7 16 4.4867 3.4694 1.4814 8 8 5.2143 4.5448 0.9040 9 8 3.1618 3.6551 1.9606 10 6 5.4964 2.6095 2.7190 11 6 5.7190 3.5274 3.9228 12 6 6.5702 2.8018 4.9667 13 6 6.7899 3.7061 6.1521 14 1 6.3647 4.6988 6.1602 15 6 7.5330 3.2657 7.2268 16 7 7.7244 4.0546 8.2615 17 14 8.2680 1.5484 7.2131 18 1 9.6249 1.5953 6.6116 19 1 8.3608 1.0386 8.6048 20 1 7.4024 0.6459 6.4121 21 6 4.2493 -0.0014 -0.3397 22 6 3.5838 -1.3240 0.0485 23 6 2.0900 -1.1781 -0.0005 24 8 1.4158 -2.1854 -0.0420 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6270 1.9717 0.6697 29 1 2.1399 1.6997 -1.0090 30 1 4.7146 2.5643 -0.6205 31 1 4.9823 1.7042 3.0420 32 1 6.4591 2.3444 2.2818 33 1 6.2333 4.4324 3.5994 34 1 4.7565 3.7929 4.3600 35 1 6.0555 1.8970 5.2900 36 1 7.5327 2.5360 4.5297 37 1 8.2475 3.7449 9.0174 38 1 4.1087 0.1813 -1.4051 39 1 5.3143 -0.0457 -0.1119 40 1 3.8942 -2.1035 -0.6474 41 1 3.8868 -1.5990 1.0588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330875711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:59 Heat of formation + Delta-G solvation = -147.787911 kcal Electronic energy + Delta-G solvation = -23318.728076 eV Core-core repulsion = 19745.122356 eV Total energy + Delta-G solvation = -3573.605720 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.54378 -38.48296 -38.01726 -37.02627 -36.48469 -35.83383 -34.23538 -33.61455 -30.14577 -29.49690 -27.89975 -25.39222 -25.20471 -23.17326 -22.26056 -20.48729 -19.86037 -18.97123 -18.51821 -18.01640 -17.55012 -17.25385 -17.13152 -16.75898 -16.20907 -16.03165 -15.49153 -15.27544 -15.02359 -14.85363 -14.29674 -14.08639 -13.75432 -13.65123 -13.56890 -13.28875 -13.18551 -13.17231 -13.10237 -12.93159 -12.75174 -12.67411 -12.52611 -12.34352 -11.85377 -11.81392 -11.61679 -11.39318 -11.30391 -10.84206 -10.76477 -10.49254 -9.78051 -8.28944 -6.34976 -0.75221 1.38013 1.40784 1.51998 1.57234 1.65953 2.08535 2.37345 2.76378 3.06569 3.22470 3.53134 3.57388 3.65044 3.72519 3.89653 3.93840 4.15888 4.36062 4.39207 4.41552 4.46530 4.61408 4.63813 4.65697 4.84564 4.89979 4.91980 4.94618 4.98862 5.08859 5.22212 5.34743 5.37322 5.48501 5.64238 6.10036 6.26291 6.39821 6.74010 7.08846 7.29923 8.88088 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.016638 B = 0.003601 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.526615 B = 7774.047362 C = 8660.758556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.604 5.604 3 C 0.090 3.910 4 C 0.131 3.869 5 H 0.102 0.898 6 N -1.093 6.093 7 S 2.623 3.377 8 O -0.991 6.991 9 O -0.987 6.987 10 C -0.612 4.612 11 C -0.105 4.105 12 C -0.006 4.006 13 C -0.544 4.544 14 H 0.029 0.971 15 C -0.001 4.001 16 N -0.954 5.954 17 Si 0.955 3.045 18 H -0.264 1.264 19 H -0.288 1.288 20 H -0.236 1.236 21 C -0.122 4.122 22 C -0.129 4.129 23 C 0.503 3.497 24 O -0.603 6.603 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.432 0.568 31 H 0.155 0.845 32 H 0.161 0.839 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.033 0.967 36 H 0.032 0.968 37 H 0.266 0.734 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.911 -11.278 -22.829 26.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.336 5.336 3 C -0.035 4.035 4 C 0.023 3.977 5 H 0.120 0.880 6 N -0.854 5.854 7 S 2.718 3.282 8 O -0.981 6.981 9 O -0.977 6.977 10 C -0.743 4.743 11 C -0.144 4.144 12 C -0.044 4.044 13 C -0.582 4.582 14 H 0.047 0.953 15 C -0.197 4.197 16 N -0.594 5.594 17 Si 0.777 3.223 18 H -0.189 1.189 19 H -0.214 1.214 20 H -0.159 1.159 21 C -0.161 4.161 22 C -0.169 4.169 23 C 0.294 3.706 24 O -0.486 6.486 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.270 0.730 31 H 0.173 0.827 32 H 0.179 0.821 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.629 -10.885 -22.539 26.475 hybrid contribution 0.592 -0.389 0.612 0.937 sum -8.037 -11.274 -21.927 25.932 Atomic orbital electron populations 1.21878 0.79209 1.03944 1.02907 1.47247 1.08127 1.06143 1.72043 1.22105 0.93430 0.84008 1.03914 1.21141 0.90056 0.84450 1.02056 0.87962 1.55254 1.68824 1.33319 1.27984 1.04446 0.74688 0.73983 0.75064 1.93561 1.75305 1.52796 1.76429 1.93556 1.36983 1.85056 1.82093 1.30532 1.17574 1.13199 1.12993 1.21174 1.01254 0.97803 0.94199 1.19510 0.96162 0.95872 0.92876 1.21591 1.32771 1.01232 1.02653 0.95281 1.26134 0.96362 1.02597 0.94621 1.70086 1.41763 1.39253 1.08336 0.85592 0.79688 0.79184 0.77786 1.18900 1.21432 1.15872 1.22031 1.02207 0.90487 1.01360 1.21697 0.88032 1.00529 1.06683 1.20974 0.92603 0.82266 0.74759 1.90690 1.67665 1.37218 1.52991 0.90620 0.91126 0.90415 0.89799 0.89186 0.72986 0.82739 0.82094 0.91925 0.91960 0.94901 0.94931 0.92488 0.88912 0.86638 0.86334 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 10.48 127.77 1.34 2.33 16 2 N -0.60 -9.91 3.21 -851.63 -2.73 -12.64 16 3 C 0.09 1.18 6.01 86.50 0.52 1.70 16 4 C 0.13 1.36 2.63 45.08 0.12 1.48 16 5 H 0.10 0.99 7.15 -2.39 -0.02 0.98 16 6 N -1.09 -12.36 5.37 -169.02 -0.91 -13.27 16 7 S 2.62 56.77 5.38 -56.49 -0.30 56.46 16 8 O -0.99 -28.62 18.08 -127.65 -2.31 -30.93 16 9 O -0.99 -27.84 17.39 -127.65 -2.22 -30.06 16 10 C -0.61 -13.19 5.96 71.99 0.43 -12.76 16 11 C -0.11 -3.69 5.16 30.60 0.16 -3.53 16 12 C -0.01 -0.24 4.04 29.85 0.12 -0.12 16 13 C -0.54 -30.78 9.66 25.60 0.25 -30.53 16 14 H 0.03 1.83 7.99 -2.91 -0.02 1.80 16 15 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 16 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16 17 Si 0.96 42.08 27.47 68.60 1.88 43.97 16 18 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 19 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.24 -9.17 6.54 99.48 0.65 -8.52 16 21 C -0.12 -0.70 5.57 30.73 0.17 -0.53 16 22 C -0.13 -1.29 6.03 29.71 0.18 -1.11 16 23 C 0.50 9.45 7.47 87.71 0.66 10.11 16 24 O -0.60 -16.67 15.95 -3.02 -0.05 -16.71 16 25 H 0.08 1.47 6.59 -2.39 -0.02 1.45 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.08 1.35 7.67 -2.39 -0.02 1.33 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.43 2.89 8.80 -96.75 -0.85 2.03 16 31 H 0.15 2.48 7.45 -2.39 -0.02 2.47 16 32 H 0.16 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 36 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16 37 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.09 0.36 8.13 -2.39 -0.02 0.34 16 39 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 40 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -84.47 346.19 -1.82 -86.29 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.12 Total: 8.69 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 4.40 Total: -32.53 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -3.34 Total: -85.18 kcal Atomic # 8 Polarization: -73.13 SS G_CDS: -4.58 Total: -77.70 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.88 Total: 43.97 kcal Atomic # 16 Polarization: 56.77 SS G_CDS: -0.30 Total: 56.46 kcal Total: -84.47 -1.82 -86.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330875711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.498 kcal (2) G-P(sol) polarization free energy of solvation -84.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds