Wall clock time and date at job start Fri Apr 10 2020 14:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 119.99634 * 2 1 4 4 H 1.09001 * 110.53977 * 177.38675 * 3 2 1 5 5 C 1.54626 * 110.48894 * 299.99982 * 3 2 1 6 6 C 1.54487 * 101.76119 * 93.88159 * 5 3 2 7 7 N 1.46756 * 105.47255 * 25.41844 * 6 5 3 8 8 C 1.46500 * 124.34670 * 163.00853 * 7 6 5 9 9 C 1.34415 * 111.30335 * 342.97792 * 7 6 5 10 10 O 1.21282 * 124.94478 * 180.44380 * 9 7 6 11 11 S 1.65597 * 120.00191 * 180.02562 * 2 1 3 12 12 O 1.42097 * 104.27796 * 26.06811 * 11 2 1 13 13 O 1.42100 * 104.27872 * 153.92619 * 11 2 1 14 14 C 1.81395 * 104.44962 * 269.99980 * 11 2 1 15 15 C 1.52998 * 109.47420 * 180.02562 * 14 11 2 16 16 C 1.53001 * 109.47127 * 179.97438 * 15 14 11 17 17 C 1.50706 * 109.47063 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99671 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00149 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00016 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00078 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47138 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47345 * 119.99603 * 21 19 17 24 24 H 1.48505 * 109.46967 * 239.99663 * 21 19 17 25 25 H 1.09005 * 109.47344 * 90.00083 * 1 2 3 26 26 H 1.09003 * 109.46570 * 209.99655 * 1 2 3 27 27 H 1.08999 * 109.47170 * 329.99431 * 1 2 3 28 28 H 1.08996 * 110.97243 * 335.76384 * 5 3 2 29 29 H 1.08997 * 110.96807 * 212.00020 * 5 3 2 30 30 H 1.09002 * 110.23989 * 144.41449 * 6 5 3 31 31 H 1.08993 * 110.24481 * 266.41198 * 6 5 3 32 32 H 1.08997 * 109.47624 * 90.00023 * 8 7 6 33 33 H 1.09009 * 109.46946 * 209.99511 * 8 7 6 34 34 H 1.08997 * 109.47462 * 329.99048 * 8 7 6 35 35 H 1.09001 * 109.47471 * 300.00068 * 14 11 2 36 36 H 1.09004 * 109.47396 * 59.99403 * 14 11 2 37 37 H 1.09000 * 109.47004 * 299.99901 * 15 14 11 38 38 H 1.08993 * 109.47465 * 59.99755 * 15 14 11 39 39 H 1.08998 * 109.47116 * 299.99321 * 16 15 14 40 40 H 1.09002 * 109.47382 * 60.00113 * 16 15 14 41 41 H 0.96999 * 120.00136 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 1 3.2717 1.0902 0.0465 5 6 1.8408 2.0996 -1.2544 6 6 0.6999 2.9962 -0.7243 7 7 0.9215 3.0973 0.7229 8 6 0.3128 4.1149 1.5832 9 6 1.7543 2.1359 1.1577 10 8 2.0996 1.9852 2.3105 11 16 2.2930 -1.4341 -0.0006 12 8 1.3970 -2.3558 -0.6062 13 8 3.5395 -1.1188 -0.6058 14 6 2.5194 -1.8269 1.7558 15 6 3.2820 -3.1465 1.8892 16 6 3.4735 -3.4774 3.3706 17 6 4.2241 -4.7775 3.5020 18 1 4.5333 -5.3143 2.6174 19 6 4.5153 -5.2823 4.7516 20 7 4.1383 -4.6289 5.8289 21 14 5.4463 -6.8935 4.9145 22 1 5.7541 -7.4261 3.5629 23 1 6.7121 -6.6611 5.6553 24 1 4.6125 -7.8744 5.6546 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3632 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.4889 1.4566 -2.0611 29 1 2.6904 2.7004 -1.5788 30 1 0.7516 3.9833 -1.1837 31 1 -0.2669 2.5354 -0.9266 32 1 -0.6403 3.7470 1.9628 33 1 0.9785 4.3292 2.4194 34 1 0.1476 5.0257 1.0078 35 1 3.0866 -1.0297 2.2362 36 1 1.5452 -1.9196 2.2359 37 1 2.7151 -3.9439 1.4087 38 1 4.2562 -3.0533 1.4093 39 1 4.0406 -2.6799 3.8507 40 1 2.4994 -3.5705 3.8510 41 1 4.3434 -4.9838 6.7080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352619680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:58 Heat of formation + Delta-G solvation = -130.635673 kcal Electronic energy + Delta-G solvation = -23735.121528 eV Core-core repulsion = 20162.259585 eV Total energy + Delta-G solvation = -3572.861943 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.72719 -38.33801 -37.92339 -37.16380 -36.54980 -36.46787 -34.20122 -32.59990 -29.71108 -28.95618 -27.82205 -26.21770 -25.55939 -22.91196 -22.38885 -20.72710 -20.04244 -19.10198 -18.63663 -18.09794 -17.51174 -17.23884 -16.90167 -16.56631 -16.46633 -15.86035 -15.36978 -15.07311 -14.74969 -14.53205 -14.26419 -14.13306 -13.96009 -13.76584 -13.61695 -13.57315 -13.34120 -13.26749 -13.10808 -13.04686 -12.85310 -12.79479 -12.64563 -12.32629 -12.19921 -12.01866 -11.81177 -11.54376 -11.36442 -11.02056 -10.61381 -10.03844 -9.74141 -8.24559 -6.37097 -0.89364 1.12644 1.38570 1.39214 1.53247 1.74519 2.02358 2.38291 2.65565 3.03865 3.08521 3.18554 3.39474 3.62565 3.79701 3.86047 3.93039 4.11018 4.31847 4.38259 4.43736 4.56279 4.58368 4.59238 4.71660 4.79124 4.85354 4.89772 4.91893 5.01657 5.04400 5.08148 5.37163 5.41218 5.53717 5.56528 5.75798 5.99157 6.15316 6.78885 7.02487 7.32654 8.87598 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.023362 B = 0.003493 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.245742 B = 8014.520589 C = 8735.436869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.981 5.981 3 C 0.107 3.893 4 H 0.123 0.877 5 C -0.135 4.135 6 C 0.098 3.902 7 N -0.614 5.614 8 C 0.090 3.910 9 C 0.499 3.501 10 O -0.570 6.570 11 S 2.632 3.368 12 O -0.969 6.969 13 O -0.974 6.974 14 C -0.617 4.617 15 C -0.103 4.103 16 C 0.030 3.970 17 C -0.551 4.551 18 H 0.064 0.936 19 C -0.001 4.001 20 N -0.933 5.933 21 Si 0.969 3.031 22 H -0.260 1.260 23 H -0.277 1.277 24 H -0.275 1.275 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.136 0.864 37 H 0.072 0.928 38 H 0.068 0.932 39 H -0.004 1.004 40 H -0.001 1.001 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.445 20.463 -17.282 29.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.820 5.820 3 C -0.003 4.003 4 H 0.141 0.859 5 C -0.174 4.174 6 C -0.023 4.023 7 N -0.347 5.347 8 C -0.051 4.051 9 C 0.284 3.716 10 O -0.449 6.449 11 S 2.727 3.273 12 O -0.959 6.959 13 O -0.964 6.964 14 C -0.747 4.747 15 C -0.142 4.142 16 C -0.009 4.009 17 C -0.589 4.589 18 H 0.083 0.917 19 C -0.199 4.199 20 N -0.573 5.573 21 Si 0.793 3.207 22 H -0.184 1.184 23 H -0.202 1.202 24 H -0.201 1.201 25 H 0.109 0.891 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.147 0.853 36 H 0.154 0.846 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.014 0.986 40 H 0.018 0.982 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.089 20.006 -17.246 28.647 hybrid contribution 0.433 -0.629 1.701 1.865 sum -10.656 19.377 -15.544 27.031 Atomic orbital electron populations 1.21843 0.76413 1.03827 1.04389 1.57336 1.16278 1.18975 1.89376 1.21767 0.98578 0.83973 0.96020 0.85943 1.23071 1.00486 0.98109 0.95706 1.22498 0.99546 1.02774 0.77490 1.48359 1.45477 1.29927 1.10985 1.21742 0.97754 0.91007 0.94591 1.21428 0.78910 0.82134 0.89167 1.90755 1.59443 1.72832 1.21828 1.04426 0.73135 0.72811 0.76931 1.93545 1.65097 1.62960 1.74341 1.93528 1.45166 1.83224 1.74524 1.30616 1.10650 1.07323 1.26092 1.21305 0.99211 0.93063 1.00626 1.18967 0.95599 0.95476 0.90823 1.21758 1.36642 1.07556 0.92960 0.91737 1.26038 0.96827 1.01608 0.95453 1.70110 1.47893 1.40897 0.98375 0.85333 0.78121 0.78526 0.78691 1.18414 1.20214 1.20095 0.89071 0.90769 0.90129 0.86778 0.86814 0.86703 0.88805 0.91850 0.92605 0.87411 0.85344 0.84593 0.90954 0.91302 0.98602 0.98229 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 8.86 127.77 1.13 2.43 16 2 N -0.98 -21.76 3.06 -516.55 -1.58 -23.34 16 3 C 0.11 2.16 3.33 44.98 0.15 2.31 16 4 H 0.12 2.78 7.01 -2.39 -0.02 2.76 16 5 C -0.13 -1.33 6.56 31.65 0.21 -1.13 16 6 C 0.10 0.63 6.47 86.84 0.56 1.19 16 7 N -0.61 -8.91 3.01 -842.91 -2.53 -11.44 16 8 C 0.09 1.00 10.96 127.77 1.40 2.40 16 9 C 0.50 11.82 6.60 87.90 0.58 12.40 16 10 O -0.57 -19.66 17.60 -3.03 -0.05 -19.71 16 11 S 2.63 79.25 5.37 -56.49 -0.30 78.95 16 12 O -0.97 -32.49 17.09 -127.65 -2.18 -34.67 16 13 O -0.97 -33.25 16.63 -127.65 -2.12 -35.37 16 14 C -0.62 -21.83 6.18 71.98 0.44 -21.38 16 15 C -0.10 -4.52 5.16 30.59 0.16 -4.37 16 16 C 0.03 1.64 4.97 29.85 0.15 1.79 16 17 C -0.55 -32.69 9.11 25.60 0.23 -32.46 16 18 H 0.06 3.65 7.74 -2.91 -0.02 3.62 16 19 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 20 N -0.93 -58.43 13.29 21.45 0.28 -58.14 16 21 Si 0.97 45.50 29.54 68.60 2.03 47.53 16 22 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 25 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.07 1.29 7.79 -2.39 -0.02 1.27 16 27 H 0.08 1.12 5.95 -2.39 -0.01 1.10 16 28 H 0.11 0.90 8.08 -2.39 -0.02 0.88 16 29 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.09 0.33 7.27 -2.39 -0.02 0.32 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.87 7.93 -2.38 -0.02 0.85 16 34 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.13 4.60 8.14 -2.39 -0.02 4.58 16 36 H 0.14 4.44 8.14 -2.39 -0.02 4.42 16 37 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -84.31 350.19 0.02 -84.29 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 1.01 Total: 8.35 kcal Atomic # 6 Polarization: -41.90 SS G_CDS: 5.48 Total: -36.43 kcal Atomic # 7 Polarization: -89.10 SS G_CDS: -3.83 Total: -92.92 kcal Atomic # 8 Polarization: -85.40 SS G_CDS: -4.36 Total: -89.76 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 16 Polarization: 79.25 SS G_CDS: -0.30 Total: 78.95 kcal Total: -84.31 0.02 -84.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352619680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.347 kcal (2) G-P(sol) polarization free energy of solvation -84.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds