Wall clock time and date at job start Fri Apr 10 2020 14:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.45756 * 117.94688 * 2 1 4 4 C 1.52915 * 110.49029 * 160.92297 * 3 2 1 5 5 C 1.53353 * 108.67388 * 50.74980 * 4 3 2 6 6 C 1.53076 * 108.42360 * 292.47124 * 5 4 3 7 7 H 1.08998 * 109.39551 * 288.85559 * 6 5 4 8 8 N 1.46495 * 109.39578 * 169.03050 * 6 5 4 9 9 S 1.65601 * 119.99861 * 145.00046 * 8 6 5 10 10 O 1.42096 * 104.27550 * 308.92761 * 9 8 6 11 11 O 1.42097 * 104.27967 * 181.06604 * 9 8 6 12 12 C 1.81409 * 104.44942 * 64.99646 * 9 8 6 13 13 C 1.52999 * 109.46814 * 180.02562 * 12 9 8 14 14 C 1.53006 * 109.46623 * 179.97438 * 13 12 9 15 15 C 1.50699 * 109.46866 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00270 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00305 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99832 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46901 * 89.99815 * 19 17 15 21 21 H 1.48488 * 109.47487 * 210.00255 * 19 17 15 22 22 H 1.48503 * 109.47026 * 330.00635 * 19 17 15 23 23 C 1.33346 * 117.94414 * 179.97438 * 2 1 3 24 24 O 1.21276 * 118.25335 * 2.22498 * 23 2 1 25 25 H 1.08998 * 109.47061 * 90.00334 * 1 2 3 26 26 H 1.09000 * 109.47350 * 210.00603 * 1 2 3 27 27 H 1.08999 * 109.47548 * 330.00247 * 1 2 3 28 28 H 1.08999 * 109.30012 * 40.60906 * 3 2 1 29 29 H 1.09000 * 109.29629 * 281.23436 * 3 2 1 30 30 H 1.09001 * 109.60115 * 290.99602 * 4 3 2 31 31 H 1.08996 * 109.74014 * 170.58449 * 4 3 2 32 32 H 1.08995 * 109.67054 * 172.73587 * 5 4 3 33 33 H 1.08993 * 109.69986 * 52.21829 * 5 4 3 34 34 H 0.97004 * 120.00070 * 324.99176 * 8 6 5 35 35 H 1.09000 * 109.47067 * 60.00006 * 12 9 8 36 36 H 1.09001 * 109.46593 * 300.00012 * 12 9 8 37 37 H 1.09000 * 109.47486 * 60.00033 * 13 12 9 38 38 H 1.09001 * 109.47362 * 299.99310 * 13 12 9 39 39 H 1.08993 * 109.46955 * 300.00075 * 14 13 12 40 40 H 1.09000 * 109.47050 * 59.99904 * 14 13 12 41 41 H 0.97002 * 120.00008 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5948 1.1260 0.4682 5 6 4.2493 -0.0014 -0.3396 6 6 3.5838 -1.3240 0.0488 7 1 3.8868 -1.5988 1.0591 8 7 4.0011 -2.3716 -0.8864 9 16 4.2169 -3.9231 -0.3491 10 8 5.0698 -3.7877 0.7793 11 8 4.6365 -4.6384 -1.5030 12 6 2.5615 -4.4585 0.1648 13 6 2.6296 -5.8947 0.6878 14 6 1.2336 -6.3461 1.1218 15 6 1.3005 -7.7609 1.6364 16 1 2.2442 -8.2858 1.6520 17 6 0.1567 -8.3856 2.0864 18 7 0.2150 -9.6205 2.5351 19 14 -1.4758 -7.4780 2.0589 20 1 -2.1538 -7.7184 0.7598 21 1 -2.3352 -7.9714 3.1647 22 1 -1.2358 -6.0225 2.2301 23 6 2.0899 -1.1780 0.0005 24 8 1.4159 -2.1854 -0.0405 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6270 1.9718 0.6696 29 1 2.1398 1.6997 -1.0091 30 1 3.6100 0.8727 1.5282 31 1 4.1401 2.0558 0.3065 32 1 5.3142 -0.0455 -0.1117 33 1 4.1092 0.1809 -1.4050 34 1 4.1509 -2.1565 -1.8203 35 1 1.8842 -4.4137 -0.6880 36 1 2.1960 -3.8017 0.9541 37 1 3.3069 -5.9391 1.5407 38 1 2.9953 -6.5519 -0.1012 39 1 0.8683 -5.6889 1.9109 40 1 0.5559 -6.3016 0.2692 41 1 -0.5896 -10.0599 2.8520 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360459810.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:45 Heat of formation + Delta-G solvation = -111.181410 kcal Electronic energy + Delta-G solvation = -23925.382822 eV Core-core repulsion = 20353.364479 eV Total energy + Delta-G solvation = -3572.018343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94082 -36.95003 -36.88616 -36.03796 -35.70600 -34.61341 -32.62682 -32.08176 -28.86850 -28.18667 -27.45937 -24.27747 -23.43686 -22.75145 -20.41576 -19.45740 -19.13346 -17.52665 -17.42563 -16.99482 -16.71686 -16.51160 -15.69901 -15.68700 -14.97787 -14.69032 -14.27221 -14.10431 -14.09162 -13.93351 -13.02065 -12.86761 -12.74250 -12.46127 -12.36103 -12.19852 -11.96711 -11.83307 -11.77928 -11.65563 -11.60301 -11.42290 -11.36424 -11.01249 -10.82877 -10.51433 -9.93801 -9.73497 -9.60006 -9.28151 -9.11107 -9.07699 -8.49361 -5.99836 -3.97934 0.51495 2.21143 2.55874 2.89808 3.34893 3.41366 3.47316 3.95339 4.06655 4.13830 4.19413 4.27671 4.46884 4.49789 4.74484 4.80816 4.93989 5.00022 5.06716 5.23878 5.26041 5.32900 5.34079 5.42052 5.47342 5.51179 5.60693 5.71590 5.96258 6.09845 6.32459 6.56578 6.70393 6.84457 7.05609 7.30643 7.43243 7.81609 7.84362 8.57677 9.05065 9.62373 11.13559 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.004478 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.617223 B = 6251.340881 C = 7614.440569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.605 5.605 3 C 0.111 3.889 4 C -0.137 4.137 5 C -0.125 4.125 6 C 0.140 3.860 7 H 0.126 0.874 8 N -1.104 6.104 9 S 2.595 3.405 10 O -0.964 6.964 11 O -0.962 6.962 12 C -0.589 4.589 13 C -0.099 4.099 14 C -0.002 4.002 15 C -0.524 4.524 16 H 0.074 0.926 17 C 0.067 3.933 18 N -0.903 5.903 19 Si 0.879 3.121 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 C 0.490 3.510 24 O -0.527 6.527 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.417 0.583 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.020 0.980 40 H 0.016 0.984 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.983 29.102 -6.604 30.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.339 5.339 3 C -0.012 4.012 4 C -0.175 4.175 5 C -0.165 4.165 6 C 0.028 3.972 7 H 0.144 0.856 8 N -0.860 5.860 9 S 2.692 3.308 10 O -0.954 6.954 11 O -0.953 6.953 12 C -0.722 4.722 13 C -0.139 4.139 14 C -0.040 4.040 15 C -0.562 4.562 16 H 0.092 0.908 17 C -0.134 4.134 18 N -0.542 5.542 19 Si 0.706 3.294 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.189 1.189 23 C 0.276 3.724 24 O -0.403 6.403 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.251 0.749 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.038 0.962 40 H 0.034 0.966 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.385 27.928 -6.362 29.145 hybrid contribution -1.691 0.773 -0.366 1.895 sum 3.694 28.701 -6.728 29.709 Atomic orbital electron populations 1.21760 0.79136 1.03575 1.02248 1.47276 1.07632 1.05871 1.73098 1.21481 0.93265 0.84591 1.01873 1.21909 0.94580 0.99891 1.01134 1.21952 1.01327 0.91891 1.01293 1.20640 0.89929 0.90455 0.96131 0.85635 1.55668 1.85203 1.25881 1.19217 1.05508 0.78325 0.72462 0.74467 1.93559 1.63674 1.84702 1.53497 1.93577 1.81531 1.70750 1.49421 1.30557 1.20564 1.08208 1.12850 1.21350 1.02702 0.89275 1.00579 1.19487 0.91244 0.97052 0.96253 1.21185 0.96608 0.96744 1.41640 0.90792 1.25009 0.99018 0.94705 0.94677 1.69918 1.28968 1.12127 1.43210 0.86781 0.83935 0.80854 0.77782 1.20267 1.21396 1.18910 1.20876 0.91485 0.83307 0.76768 1.90831 1.66121 1.34785 1.48538 0.92527 0.89791 0.91247 0.90318 0.91477 0.90251 0.88925 0.89224 0.90275 0.74934 0.84909 0.84491 0.91346 0.91378 0.96183 0.96600 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.22 59.85 0.61 1.20 16 2 N -0.60 -4.96 3.21 -182.86 -0.59 -5.55 16 3 C 0.11 0.49 6.39 -4.49 -0.03 0.46 16 4 C -0.14 -0.52 6.02 -26.59 -0.16 -0.68 16 5 C -0.13 -0.71 5.56 -26.51 -0.15 -0.86 16 6 C 0.14 1.33 2.92 -69.30 -0.20 1.13 16 7 H 0.13 1.21 7.47 -51.93 -0.39 0.83 16 8 N -1.10 -12.25 5.17 -6.07 -0.03 -12.28 16 9 S 2.59 40.59 5.44 -107.50 -0.58 40.01 16 10 O -0.96 -17.18 17.39 -57.54 -1.00 -18.18 16 11 O -0.96 -17.69 18.08 -57.54 -1.04 -18.73 16 12 C -0.59 -10.26 4.26 37.16 0.16 -10.11 16 13 C -0.10 -2.14 5.16 -26.73 -0.14 -2.27 16 14 C 0.00 -0.04 4.04 -27.88 -0.11 -0.15 16 15 C -0.52 -15.63 9.66 -34.44 -0.33 -15.96 16 16 H 0.07 2.35 7.99 -52.48 -0.42 1.93 16 17 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 18 N -0.90 -28.67 13.96 55.43 0.77 -27.90 16 19 Si 0.88 22.53 27.47 -169.99 -4.67 17.86 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 22 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 23 C 0.49 5.42 7.20 -11.87 -0.09 5.34 16 24 O -0.53 -7.80 11.45 5.56 0.06 -7.74 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.86 7.20 -51.93 -0.37 0.48 16 27 H 0.07 0.35 7.86 -51.93 -0.41 -0.05 16 28 H 0.08 0.23 7.92 -51.93 -0.41 -0.18 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.33 8.12 -51.93 -0.42 -0.10 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.38 8.12 -51.93 -0.42 -0.04 16 34 H 0.42 3.67 8.79 -34.47 -0.30 3.37 16 35 H 0.13 2.25 7.64 -51.92 -0.40 1.85 16 36 H 0.14 2.32 6.39 -51.92 -0.33 1.99 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 39 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 40 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 41 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 339.24 15.07 5.11 5.11 Total: -1.00 -38.85 339.24 -8.84 -47.69 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.35 Total: -0.33 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -0.53 Total: -19.97 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.16 Total: -45.73 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -1.98 Total: -44.64 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.67 Total: 17.86 kcal Atomic # 16 Polarization: 40.59 SS G_CDS: -0.58 Total: 40.01 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -38.85 -8.84 -47.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360459810.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.490 kcal (2) G-P(sol) polarization free energy of solvation -38.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds