Wall clock time and date at job start Fri Apr 10 2020 14:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.45756 * 117.94688 * 2 1 4 4 C 1.52915 * 110.49029 * 160.92297 * 3 2 1 5 5 C 1.53353 * 108.67388 * 50.74980 * 4 3 2 6 6 C 1.53076 * 108.42360 * 292.47124 * 5 4 3 7 7 H 1.08998 * 109.39551 * 288.85559 * 6 5 4 8 8 N 1.46495 * 109.39578 * 169.03050 * 6 5 4 9 9 S 1.65601 * 119.99861 * 145.00046 * 8 6 5 10 10 O 1.42096 * 104.27550 * 308.92761 * 9 8 6 11 11 O 1.42097 * 104.27967 * 181.06604 * 9 8 6 12 12 C 1.81409 * 104.44942 * 64.99646 * 9 8 6 13 13 C 1.52999 * 109.46814 * 180.02562 * 12 9 8 14 14 C 1.53006 * 109.46623 * 179.97438 * 13 12 9 15 15 C 1.50699 * 109.46866 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00270 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00305 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 119.99832 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46901 * 89.99815 * 19 17 15 21 21 H 1.48488 * 109.47487 * 210.00255 * 19 17 15 22 22 H 1.48503 * 109.47026 * 330.00635 * 19 17 15 23 23 C 1.33346 * 117.94414 * 179.97438 * 2 1 3 24 24 O 1.21276 * 118.25335 * 2.22498 * 23 2 1 25 25 H 1.08998 * 109.47061 * 90.00334 * 1 2 3 26 26 H 1.09000 * 109.47350 * 210.00603 * 1 2 3 27 27 H 1.08999 * 109.47548 * 330.00247 * 1 2 3 28 28 H 1.08999 * 109.30012 * 40.60906 * 3 2 1 29 29 H 1.09000 * 109.29629 * 281.23436 * 3 2 1 30 30 H 1.09001 * 109.60115 * 290.99602 * 4 3 2 31 31 H 1.08996 * 109.74014 * 170.58449 * 4 3 2 32 32 H 1.08995 * 109.67054 * 172.73587 * 5 4 3 33 33 H 1.08993 * 109.69986 * 52.21829 * 5 4 3 34 34 H 0.97004 * 120.00070 * 324.99176 * 8 6 5 35 35 H 1.09000 * 109.47067 * 60.00006 * 12 9 8 36 36 H 1.09001 * 109.46593 * 300.00012 * 12 9 8 37 37 H 1.09000 * 109.47486 * 60.00033 * 13 12 9 38 38 H 1.09001 * 109.47362 * 299.99310 * 13 12 9 39 39 H 1.08993 * 109.46955 * 300.00075 * 14 13 12 40 40 H 1.09000 * 109.47050 * 59.99904 * 14 13 12 41 41 H 0.97002 * 120.00008 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5948 1.1260 0.4682 5 6 4.2493 -0.0014 -0.3396 6 6 3.5838 -1.3240 0.0488 7 1 3.8868 -1.5988 1.0591 8 7 4.0011 -2.3716 -0.8864 9 16 4.2169 -3.9231 -0.3491 10 8 5.0698 -3.7877 0.7793 11 8 4.6365 -4.6384 -1.5030 12 6 2.5615 -4.4585 0.1648 13 6 2.6296 -5.8947 0.6878 14 6 1.2336 -6.3461 1.1218 15 6 1.3005 -7.7609 1.6364 16 1 2.2442 -8.2858 1.6520 17 6 0.1567 -8.3856 2.0864 18 7 0.2150 -9.6205 2.5351 19 14 -1.4758 -7.4780 2.0589 20 1 -2.1538 -7.7184 0.7598 21 1 -2.3352 -7.9714 3.1647 22 1 -1.2358 -6.0225 2.2301 23 6 2.0899 -1.1780 0.0005 24 8 1.4159 -2.1854 -0.0405 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6270 1.9718 0.6696 29 1 2.1398 1.6997 -1.0091 30 1 3.6100 0.8727 1.5282 31 1 4.1401 2.0558 0.3065 32 1 5.3142 -0.0455 -0.1117 33 1 4.1092 0.1809 -1.4050 34 1 4.1509 -2.1565 -1.8203 35 1 1.8842 -4.4137 -0.6880 36 1 2.1960 -3.8017 0.9541 37 1 3.3069 -5.9391 1.5407 38 1 2.9953 -6.5519 -0.1012 39 1 0.8683 -5.6889 1.9109 40 1 0.5559 -6.3016 0.2692 41 1 -0.5896 -10.0599 2.8520 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360459810.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:44 Heat of formation + Delta-G solvation = -142.492035 kcal Electronic energy + Delta-G solvation = -23926.740552 eV Core-core repulsion = 20353.364479 eV Total energy + Delta-G solvation = -3573.376074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.64600 -38.27305 -37.61405 -37.15289 -36.75452 -36.49507 -34.26361 -33.26266 -30.16365 -29.48959 -28.03262 -25.40455 -24.85041 -23.27239 -22.28199 -20.56566 -19.94817 -19.01307 -18.59197 -18.29631 -17.66189 -17.23411 -17.09488 -16.84774 -16.23463 -15.92266 -15.63870 -15.20528 -15.01085 -14.83702 -14.42803 -14.03613 -13.73241 -13.56410 -13.52641 -13.30184 -13.25730 -13.21254 -13.15233 -12.96173 -12.71145 -12.66334 -12.24156 -12.09495 -11.86921 -11.85973 -11.70378 -11.67686 -11.41737 -11.00589 -10.80775 -10.27608 -9.70534 -8.33357 -6.38419 -0.77416 1.32097 1.33799 1.33940 1.47190 1.75908 2.05374 2.32901 2.69233 3.01175 3.16631 3.44788 3.53654 3.76506 3.83106 3.91266 3.98899 4.12406 4.31983 4.43115 4.44444 4.50813 4.61604 4.66922 4.71805 4.88582 4.96024 4.96853 4.99921 5.09326 5.12361 5.31787 5.34578 5.41788 5.46983 5.59126 5.91535 6.22556 6.40069 6.68352 7.08920 7.26122 8.83513 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.004478 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.617223 B = 6251.340881 C = 7614.440569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.599 5.599 3 C 0.102 3.898 4 C -0.132 4.132 5 C -0.121 4.121 6 C 0.131 3.869 7 H 0.122 0.878 8 N -1.088 6.088 9 S 2.627 3.373 10 O -0.985 6.985 11 O -0.990 6.990 12 C -0.589 4.589 13 C -0.104 4.104 14 C 0.000 4.000 15 C -0.542 4.542 16 H 0.035 0.965 17 C 0.006 3.994 18 N -0.948 5.948 19 Si 0.952 3.048 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.250 1.250 23 C 0.482 3.518 24 O -0.575 6.575 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.430 0.570 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.023 0.977 40 H 0.021 0.979 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.461 33.196 -7.276 34.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.331 5.331 3 C -0.019 4.019 4 C -0.170 4.170 5 C -0.160 4.160 6 C 0.020 3.980 7 H 0.139 0.861 8 N -0.848 5.848 9 S 2.723 3.277 10 O -0.974 6.974 11 O -0.980 6.980 12 C -0.720 4.720 13 C -0.143 4.143 14 C -0.039 4.039 15 C -0.580 4.580 16 H 0.053 0.947 17 C -0.191 4.191 18 N -0.589 5.589 19 Si 0.774 3.226 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.174 1.174 23 C 0.268 3.732 24 O -0.455 6.455 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.141 0.859 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.267 0.733 35 H 0.155 0.845 36 H 0.161 0.839 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.042 0.958 40 H 0.040 0.960 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.869 32.064 -7.042 33.187 hybrid contribution -1.472 -0.434 -0.157 1.543 sum 3.397 31.629 -7.199 32.615 Atomic orbital electron populations 1.21814 0.79085 1.03647 1.02430 1.47433 1.07966 1.06488 1.71224 1.21832 0.93572 0.82885 1.03621 1.21958 0.94249 1.00335 1.00503 1.22018 1.01577 0.89968 1.02484 1.20954 0.89620 0.91756 0.95645 0.86051 1.55194 1.84823 1.24400 1.20383 1.04302 0.76876 0.73087 0.73454 1.93532 1.63854 1.85458 1.54593 1.93535 1.81686 1.72545 1.50248 1.30527 1.22903 1.05397 1.13169 1.21237 1.00402 0.92100 1.00577 1.19421 0.93790 0.94373 0.96276 1.21532 0.95389 0.98950 1.42171 0.94696 1.26008 1.03483 0.95567 0.94002 1.70064 1.30514 1.14004 1.44280 0.85640 0.78420 0.79989 0.78519 1.19004 1.20303 1.17411 1.21142 0.91922 0.83625 0.76531 1.90798 1.67055 1.36539 1.51115 0.92316 0.92724 0.88118 0.88161 0.89709 0.90597 0.85883 0.88303 0.88931 0.73297 0.84463 0.83947 0.91639 0.91842 0.95821 0.96029 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 10.22 127.77 1.31 2.31 16 2 N -0.60 -8.37 3.21 -851.64 -2.73 -11.10 16 3 C 0.10 0.49 6.39 86.49 0.55 1.04 16 4 C -0.13 -0.47 6.02 30.68 0.18 -0.28 16 5 C -0.12 -0.96 5.56 30.74 0.17 -0.79 16 6 C 0.13 2.26 2.92 44.11 0.13 2.39 16 7 H 0.12 2.20 7.47 -2.39 -0.02 2.18 16 8 N -1.09 -22.59 5.17 -173.11 -0.90 -23.49 16 9 S 2.63 81.44 5.44 -56.49 -0.31 81.13 16 10 O -0.98 -34.77 17.39 -127.65 -2.22 -36.99 16 11 O -0.99 -36.20 18.08 -127.65 -2.31 -38.51 16 12 C -0.59 -20.66 4.26 71.98 0.31 -20.35 16 13 C -0.10 -4.58 5.16 30.60 0.16 -4.42 16 14 C 0.00 0.00 4.04 29.85 0.12 0.12 16 15 C -0.54 -33.51 9.66 25.60 0.25 -33.26 16 16 H 0.03 2.34 7.99 -2.91 -0.02 2.32 16 17 C 0.01 0.40 5.47 84.65 0.46 0.86 16 18 N -0.95 -61.76 13.96 21.45 0.30 -61.46 16 19 Si 0.95 46.58 27.47 68.60 1.88 48.47 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.25 -11.60 6.54 99.48 0.65 -10.95 16 23 C 0.48 9.98 7.20 87.72 0.63 10.61 16 24 O -0.57 -16.84 11.45 -3.02 -0.03 -16.88 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.05 1.10 7.20 -2.39 -0.02 1.08 16 27 H 0.10 0.72 7.86 -2.39 -0.02 0.70 16 28 H 0.10 0.12 7.92 -2.39 -0.02 0.10 16 29 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.08 0.36 8.12 -2.39 -0.02 0.35 16 31 H 0.12 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.51 8.12 -2.39 -0.02 0.50 16 34 H 0.43 6.75 8.79 -96.74 -0.85 5.90 16 35 H 0.14 4.67 7.64 -2.39 -0.02 4.65 16 36 H 0.14 4.86 6.39 -2.39 -0.02 4.84 16 37 H 0.06 2.85 8.14 -2.39 -0.02 2.84 16 38 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.02 1.19 7.20 -2.39 -0.02 1.17 16 40 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 41 H 0.27 16.16 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -86.56 339.24 -1.92 -88.48 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.12 Total: 12.12 kcal Atomic # 6 Polarization: -46.05 SS G_CDS: 4.27 Total: -41.78 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -3.33 Total: -96.05 kcal Atomic # 8 Polarization: -87.81 SS G_CDS: -4.56 Total: -92.38 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.88 Total: 48.47 kcal Atomic # 16 Polarization: 81.44 SS G_CDS: -0.31 Total: 81.13 kcal Total: -86.56 -1.92 -88.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360459810.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.010 kcal (2) G-P(sol) polarization free energy of solvation -86.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds