Wall clock time and date at job start Fri Apr 10 2020 14:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38549 * 119.95129 * 2 1 4 4 N 1.33551 * 133.89921 * 359.96814 * 3 2 1 5 5 C 1.30866 * 109.80603 * 179.74853 * 4 3 2 6 6 N 1.34732 * 109.71055 * 0.45992 * 5 4 3 7 7 C 1.46506 * 126.50265 * 179.81936 * 6 5 4 8 8 C 1.52998 * 109.46813 * 267.83631 * 7 6 5 9 9 C 1.50705 * 115.55018 * 294.34309 * 8 7 6 10 10 H 1.08001 * 119.99506 * 89.62715 * 9 8 7 11 11 C 1.37869 * 120.00121 * 269.62824 * 9 8 7 12 12 N 1.31522 * 120.00011 * 186.77212 * 11 9 8 13 13 Si 1.86800 * 120.00220 * 6.77715 * 11 9 8 14 14 H 1.48506 * 109.46876 * 271.93305 * 13 11 9 15 15 H 1.48500 * 109.47271 * 31.93252 * 13 11 9 16 16 H 1.48502 * 109.47346 * 151.93757 * 13 11 9 17 17 C 1.53000 * 117.50017 * 80.02152 * 8 7 6 18 18 C 1.53000 * 117.49583 * 148.68212 * 8 7 6 19 19 C 1.38051 * 106.99138 * 359.55310 * 6 5 4 20 20 C 1.41149 * 134.59118 * 180.24563 * 19 6 5 21 21 O 1.21795 * 120.38855 * 0.02562 * 20 19 6 22 22 N 1.34936 * 119.22641 * 179.97438 * 20 19 6 23 23 C 1.46502 * 119.50396 * 180.02562 * 22 20 19 24 24 C 1.34417 * 120.98892 * 0.06705 * 22 20 19 25 25 O 1.21597 * 119.16532 * 179.97438 * 24 22 20 26 26 H 1.09005 * 109.47104 * 90.00435 * 1 2 3 27 27 H 1.09002 * 109.47164 * 209.99986 * 1 2 3 28 28 H 1.08997 * 109.46938 * 330.00164 * 1 2 3 29 29 H 1.07998 * 125.14314 * 180.27342 * 5 4 3 30 30 H 1.09002 * 109.46983 * 147.83787 * 7 6 5 31 31 H 1.08995 * 109.47019 * 27.83868 * 7 6 5 32 32 H 0.96991 * 120.00047 * 180.02562 * 12 11 9 33 33 H 1.08994 * 117.49503 * 215.00452 * 17 8 7 34 34 H 1.09000 * 117.49778 * 0.02562 * 17 8 7 35 35 H 1.08998 * 117.49786 * 359.96988 * 18 8 7 36 36 H 1.09002 * 117.50123 * 145.00099 * 18 8 7 37 37 H 1.08999 * 109.46769 * 180.02562 * 23 22 20 38 38 H 1.09000 * 109.47127 * 300.02631 * 23 22 20 39 39 H 1.09002 * 109.46614 * 60.02794 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1567 1.2005 0.0000 4 7 1.7852 2.4833 -0.0005 5 6 2.8445 3.2516 0.0052 6 7 3.9571 2.4918 -0.0005 7 6 5.3410 2.9727 -0.0007 8 6 5.8379 3.0957 -1.4425 9 6 5.9584 1.7992 -2.2012 10 1 5.1171 1.4231 -2.7645 11 6 7.1424 1.0932 -2.1763 12 7 7.2931 0.0346 -2.9420 13 14 8.5325 1.6402 -1.0548 14 1 9.3796 2.6324 -1.7643 15 1 7.9658 2.2592 0.1703 16 1 9.3574 0.4639 -0.6790 17 6 5.4203 4.3391 -2.2301 18 6 6.8644 4.1892 -1.7450 19 6 3.5457 1.1740 0.0000 20 6 4.2098 -0.0715 0.0001 21 8 5.4268 -0.1208 0.0002 22 7 3.4807 -1.2069 0.0012 23 6 4.1638 -2.5029 0.0019 24 6 2.1372 -1.1666 0.0008 25 8 1.5130 -2.2102 0.0013 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 2.8292 4.3315 0.0103 30 1 5.9708 2.2676 0.5419 31 1 5.3867 3.9480 0.4839 32 1 8.1258 -0.4623 -2.9242 33 1 5.2324 4.2193 -3.2970 34 1 4.7918 5.0697 -1.7209 35 1 7.1852 4.8213 -0.9170 36 1 7.6266 3.9710 -2.4930 37 1 3.4240 -3.3035 0.0023 38 1 4.7878 -2.5853 -0.8880 39 1 4.7877 -2.5843 0.8920 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594880808.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:23 Heat of formation + Delta-G solvation = 65.181228 kcal Electronic energy + Delta-G solvation = -26418.065834 eV Core-core repulsion = 22750.543949 eV Total energy + Delta-G solvation = -3667.521885 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.57333 -40.68302 -38.47416 -37.34595 -35.89765 -34.72727 -32.88243 -32.06431 -30.30424 -27.47386 -27.10602 -26.34508 -25.36187 -23.39499 -22.70073 -21.81647 -20.85932 -19.61006 -18.83032 -17.89836 -16.88978 -16.86126 -16.26021 -15.53314 -15.21774 -15.14191 -14.84605 -14.77620 -14.48039 -14.09556 -13.77887 -13.40633 -13.04594 -12.80748 -12.58818 -12.44947 -12.34298 -12.09633 -12.04000 -11.20837 -10.97822 -10.88439 -10.69485 -10.48397 -10.17248 -10.12501 -9.80010 -9.53713 -9.38568 -9.19382 -9.10835 -8.74017 -8.50007 -7.68451 -6.09930 -4.12211 1.47439 2.08313 2.38995 2.92673 3.08843 3.27640 3.31074 3.37056 3.39191 3.96483 4.39464 4.43224 4.68846 4.85407 4.98426 5.11236 5.24455 5.34722 5.48889 5.56427 5.62655 5.70959 5.74139 5.78185 5.85705 5.88764 5.94376 6.01537 6.07964 6.25418 6.29518 6.41098 6.54388 6.79931 6.88039 6.95782 7.33728 7.60822 7.64876 7.89522 7.99614 8.43112 8.44645 8.90186 9.54748 11.02628 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.016606 B = 0.007181 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.702476 B = 3898.023827 C = 5083.281583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.513 5.513 3 C 0.279 3.721 4 N -0.505 5.505 5 C 0.238 3.762 6 N -0.373 5.373 7 C 0.127 3.873 8 C -0.016 4.016 9 C -0.484 4.484 10 H 0.070 0.930 11 C 0.103 3.897 12 N -0.886 5.886 13 Si 0.886 3.114 14 H -0.283 1.283 15 H -0.267 1.267 16 H -0.294 1.294 17 C -0.176 4.176 18 C -0.188 4.188 19 C -0.104 4.104 20 C 0.582 3.418 21 O -0.458 6.458 22 N -0.555 5.555 23 C 0.088 3.912 24 C 0.711 3.289 25 O -0.557 6.557 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.218 0.782 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.264 0.736 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.320 4.233 8.016 12.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.241 5.241 3 C 0.049 3.951 4 N -0.229 5.229 5 C -0.045 4.045 6 N -0.051 5.051 7 C 0.005 3.995 8 C -0.018 4.018 9 C -0.520 4.520 10 H 0.088 0.912 11 C -0.102 4.102 12 N -0.522 5.522 13 Si 0.715 3.285 14 H -0.210 1.210 15 H -0.192 1.192 16 H -0.221 1.221 17 C -0.214 4.214 18 C -0.226 4.226 19 C -0.224 4.224 20 C 0.374 3.626 21 O -0.327 6.327 22 N -0.300 5.300 23 C -0.053 4.053 24 C 0.414 3.586 25 O -0.433 6.433 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.234 0.766 30 H 0.121 0.879 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.438 3.734 7.953 12.182 hybrid contribution 1.640 0.184 0.355 1.688 sum -6.798 3.917 8.309 11.427 Atomic orbital electron populations 1.21804 0.75306 1.04176 1.03250 1.43599 1.08159 1.01114 1.71228 1.17987 0.87260 0.87145 1.02754 1.69503 1.29658 0.98449 1.25291 1.24889 0.78976 0.98590 1.02016 1.44780 1.08879 1.03500 1.47918 1.22224 0.77456 0.99262 1.00517 1.19665 0.99329 0.91946 0.90864 1.19862 0.99670 1.02644 1.29829 0.91233 1.24751 0.97779 0.94020 0.93610 1.69862 1.26231 1.18424 1.37654 0.86807 0.82225 0.77489 0.81970 1.20988 1.19202 1.22131 1.22869 0.96651 1.01032 1.00806 1.22994 0.93211 1.03364 1.03061 1.18721 0.92620 0.87396 1.23635 1.15458 0.87167 0.82079 0.77936 1.90977 1.11699 1.86394 1.43637 1.45798 1.05541 1.09958 1.68748 1.21851 0.97772 0.81693 1.03990 1.15436 0.81732 0.83204 0.78265 1.90939 1.66255 1.29490 1.56605 0.91559 0.89531 0.89522 0.76611 0.87941 0.90484 0.92661 0.89215 0.90964 0.90687 0.88808 0.88474 0.89879 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.22 10.39 59.85 0.62 1.84 16 2 N -0.51 -8.62 3.06 -128.31 -0.39 -9.01 16 3 C 0.28 5.01 7.64 -154.55 -1.18 3.83 16 4 N -0.50 -8.21 11.16 -13.39 -0.15 -8.36 16 5 C 0.24 3.50 12.49 -90.35 -1.13 2.37 16 6 N -0.37 -6.68 2.71 -115.75 -0.31 -6.99 16 7 C 0.13 2.32 5.45 -4.04 -0.02 2.29 16 8 C -0.02 -0.34 1.05 -155.66 -0.16 -0.51 16 9 C -0.48 -12.75 7.86 -34.44 -0.27 -13.02 16 10 H 0.07 2.12 8.06 -52.49 -0.42 1.70 16 11 C 0.10 2.84 4.70 -17.82 -0.08 2.76 16 12 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 13 Si 0.89 21.59 24.92 -169.99 -4.24 17.36 16 14 H -0.28 -6.68 7.04 56.52 0.40 -6.28 16 15 H -0.27 -6.07 5.79 56.52 0.33 -5.74 16 16 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 17 C -0.18 -3.15 9.96 -26.69 -0.27 -3.42 16 18 C -0.19 -3.57 7.64 -26.69 -0.20 -3.77 16 19 C -0.10 -2.06 6.57 -83.71 -0.55 -2.61 16 20 C 0.58 12.44 7.37 -15.08 -0.11 12.33 16 21 O -0.46 -11.07 14.14 5.10 0.07 -10.99 16 22 N -0.55 -10.58 2.96 -131.63 -0.39 -10.97 16 23 C 0.09 1.44 9.99 59.85 0.60 2.03 16 24 C 0.71 12.98 8.12 -87.36 -0.71 12.27 16 25 O -0.56 -10.44 15.01 5.28 0.08 -10.36 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.09 1.01 7.38 -51.93 -0.38 0.63 16 28 H 0.09 0.97 8.01 -51.93 -0.42 0.55 16 29 H 0.22 2.11 8.06 -52.49 -0.42 1.69 16 30 H 0.10 2.13 5.80 -51.93 -0.30 1.83 16 31 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.09 1.95 7.19 -51.93 -0.37 1.57 16 37 H 0.10 1.42 6.80 -51.93 -0.35 1.07 16 38 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 323.64 15.07 4.88 4.88 Total: -1.00 -33.08 323.64 -7.99 -41.07 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.84 Total: 2.56 kcal Atomic # 6 Polarization: 19.87 SS G_CDS: -3.47 Total: 16.40 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.47 Total: -60.92 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: 0.15 Total: -21.35 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.24 Total: 17.36 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.08 -7.99 -41.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594880808.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.252 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds