Wall clock time and date at job start Fri Apr 10 2020 14:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38549 * 119.95129 * 2 1 4 4 N 1.33551 * 133.89921 * 359.96814 * 3 2 1 5 5 C 1.30866 * 109.80603 * 179.74853 * 4 3 2 6 6 N 1.34732 * 109.71055 * 0.45992 * 5 4 3 7 7 C 1.46506 * 126.50265 * 179.81936 * 6 5 4 8 8 C 1.52998 * 109.46813 * 267.83631 * 7 6 5 9 9 C 1.50705 * 115.55018 * 294.34309 * 8 7 6 10 10 H 1.08001 * 119.99506 * 89.62715 * 9 8 7 11 11 C 1.37869 * 120.00121 * 269.62824 * 9 8 7 12 12 N 1.31522 * 120.00011 * 186.77212 * 11 9 8 13 13 Si 1.86800 * 120.00220 * 6.77715 * 11 9 8 14 14 H 1.48506 * 109.46876 * 271.93305 * 13 11 9 15 15 H 1.48500 * 109.47271 * 31.93252 * 13 11 9 16 16 H 1.48502 * 109.47346 * 151.93757 * 13 11 9 17 17 C 1.53000 * 117.50017 * 80.02152 * 8 7 6 18 18 C 1.53000 * 117.49583 * 148.68212 * 8 7 6 19 19 C 1.38051 * 106.99138 * 359.55310 * 6 5 4 20 20 C 1.41149 * 134.59118 * 180.24563 * 19 6 5 21 21 O 1.21795 * 120.38855 * 0.02562 * 20 19 6 22 22 N 1.34936 * 119.22641 * 179.97438 * 20 19 6 23 23 C 1.46502 * 119.50396 * 180.02562 * 22 20 19 24 24 C 1.34417 * 120.98892 * 0.06705 * 22 20 19 25 25 O 1.21597 * 119.16532 * 179.97438 * 24 22 20 26 26 H 1.09005 * 109.47104 * 90.00435 * 1 2 3 27 27 H 1.09002 * 109.47164 * 209.99986 * 1 2 3 28 28 H 1.08997 * 109.46938 * 330.00164 * 1 2 3 29 29 H 1.07998 * 125.14314 * 180.27342 * 5 4 3 30 30 H 1.09002 * 109.46983 * 147.83787 * 7 6 5 31 31 H 1.08995 * 109.47019 * 27.83868 * 7 6 5 32 32 H 0.96991 * 120.00047 * 180.02562 * 12 11 9 33 33 H 1.08994 * 117.49503 * 215.00452 * 17 8 7 34 34 H 1.09000 * 117.49778 * 0.02562 * 17 8 7 35 35 H 1.08998 * 117.49786 * 359.96988 * 18 8 7 36 36 H 1.09002 * 117.50123 * 145.00099 * 18 8 7 37 37 H 1.08999 * 109.46769 * 180.02562 * 23 22 20 38 38 H 1.09000 * 109.47127 * 300.02631 * 23 22 20 39 39 H 1.09002 * 109.46614 * 60.02794 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1567 1.2005 0.0000 4 7 1.7852 2.4833 -0.0005 5 6 2.8445 3.2516 0.0052 6 7 3.9571 2.4918 -0.0005 7 6 5.3410 2.9727 -0.0007 8 6 5.8379 3.0957 -1.4425 9 6 5.9584 1.7992 -2.2012 10 1 5.1171 1.4231 -2.7645 11 6 7.1424 1.0932 -2.1763 12 7 7.2931 0.0346 -2.9420 13 14 8.5325 1.6402 -1.0548 14 1 9.3796 2.6324 -1.7643 15 1 7.9658 2.2592 0.1703 16 1 9.3574 0.4639 -0.6790 17 6 5.4203 4.3391 -2.2301 18 6 6.8644 4.1892 -1.7450 19 6 3.5457 1.1740 0.0000 20 6 4.2098 -0.0715 0.0001 21 8 5.4268 -0.1208 0.0002 22 7 3.4807 -1.2069 0.0012 23 6 4.1638 -2.5029 0.0019 24 6 2.1372 -1.1666 0.0008 25 8 1.5130 -2.2102 0.0013 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 2.8292 4.3315 0.0103 30 1 5.9708 2.2676 0.5419 31 1 5.3867 3.9480 0.4839 32 1 8.1258 -0.4623 -2.9242 33 1 5.2324 4.2193 -3.2970 34 1 4.7918 5.0697 -1.7209 35 1 7.1852 4.8213 -0.9170 36 1 7.6266 3.9710 -2.4930 37 1 3.4240 -3.3035 0.0023 38 1 4.7878 -2.5853 -0.8880 39 1 4.7877 -2.5843 0.8920 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594880808.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:23 Heat of formation + Delta-G solvation = 43.960116 kcal Electronic energy + Delta-G solvation = -26418.986051 eV Core-core repulsion = 22750.543949 eV Total energy + Delta-G solvation = -3668.442102 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.93929 -42.07579 -40.00672 -38.86788 -37.27651 -36.25731 -34.32214 -34.01451 -31.63432 -28.80148 -28.57704 -27.67354 -27.18867 -24.79284 -24.11798 -23.26287 -22.15793 -21.21320 -20.30669 -19.34417 -18.43189 -18.31864 -17.93209 -16.97921 -16.81529 -16.61730 -16.33633 -16.27897 -15.85029 -15.37209 -15.20377 -14.91175 -14.71614 -14.52491 -14.03300 -13.90074 -13.67713 -13.38865 -13.20642 -13.06083 -12.62586 -12.36453 -12.16957 -12.03904 -11.87634 -11.56861 -11.48120 -11.05463 -10.94440 -10.86281 -10.62711 -10.37368 -10.33804 -9.06640 -8.21290 -6.23733 0.06367 0.74491 0.91507 1.31888 1.39554 1.44635 1.64120 1.82521 1.91069 2.41957 2.48632 3.06966 3.20338 3.28701 3.53835 3.81837 3.92044 4.07632 4.21965 4.28471 4.34969 4.35668 4.39932 4.44870 4.51551 4.64168 4.68519 4.69850 4.80114 4.89073 4.90923 5.06594 5.14577 5.32322 5.46778 5.54695 5.73338 6.08583 6.18037 6.32153 6.49368 6.60529 6.77939 6.95219 7.46299 8.96148 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.016606 B = 0.007181 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.702476 B = 3898.023827 C = 5083.281583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.511 5.511 3 C 0.289 3.711 4 N -0.510 5.510 5 C 0.271 3.729 6 N -0.387 5.387 7 C 0.136 3.864 8 C -0.052 4.052 9 C -0.462 4.462 10 H 0.007 0.993 11 C 0.048 3.952 12 N -0.946 5.946 13 Si 0.935 3.065 14 H -0.268 1.268 15 H -0.234 1.234 16 H -0.317 1.317 17 C -0.152 4.152 18 C -0.182 4.182 19 C -0.152 4.152 20 C 0.573 3.427 21 O -0.503 6.503 22 N -0.561 5.561 23 C 0.089 3.911 24 C 0.706 3.294 25 O -0.565 6.565 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.277 0.723 30 H 0.071 0.929 31 H 0.138 0.862 32 H 0.257 0.743 33 H 0.066 0.934 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.067 0.933 37 H 0.114 0.886 38 H 0.061 0.939 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.876 8.364 10.086 16.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.239 5.239 3 C 0.058 3.942 4 N -0.234 5.234 5 C -0.012 4.012 6 N -0.065 5.065 7 C 0.015 3.985 8 C -0.054 4.054 9 C -0.499 4.499 10 H 0.025 0.975 11 C -0.151 4.151 12 N -0.586 5.586 13 Si 0.762 3.238 14 H -0.193 1.193 15 H -0.157 1.157 16 H -0.245 1.245 17 C -0.189 4.189 18 C -0.220 4.220 19 C -0.270 4.270 20 C 0.367 3.633 21 O -0.377 6.377 22 N -0.306 5.306 23 C -0.052 4.052 24 C 0.409 3.591 25 O -0.442 6.442 26 H 0.093 0.907 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.292 0.708 30 H 0.090 0.910 31 H 0.156 0.844 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.145 0.855 35 H 0.137 0.863 36 H 0.085 0.915 37 H 0.133 0.867 38 H 0.080 0.920 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.061 7.889 10.036 16.253 hybrid contribution 1.917 -1.075 -0.367 2.228 sum -8.144 6.814 9.669 14.361 Atomic orbital electron populations 1.22098 0.72817 1.05643 1.04286 1.43849 1.09605 1.00464 1.70011 1.18194 0.86708 0.88038 1.01249 1.69626 1.30226 0.97376 1.26180 1.26190 0.77259 1.00469 0.97260 1.44878 1.09564 1.02921 1.49125 1.22036 0.77207 1.01273 0.97978 1.19577 1.03049 0.90148 0.92602 1.19890 0.96852 1.04724 1.28454 0.97458 1.25498 1.00568 0.94063 0.94934 1.70043 1.26766 1.20957 1.40815 0.85997 0.79375 0.76776 0.81647 1.19336 1.15732 1.24538 1.22932 0.96777 0.99484 0.99673 1.23055 0.93012 1.02256 1.03685 1.18823 0.93574 0.88007 1.26605 1.15905 0.86962 0.83247 0.77216 1.90935 1.13295 1.87060 1.46405 1.45949 1.06159 1.10255 1.68260 1.21908 0.98119 0.81524 1.03601 1.15531 0.81378 0.83785 0.78427 1.90922 1.66222 1.29826 1.57209 0.90703 0.88632 0.87524 0.70799 0.91024 0.84418 0.93473 0.91529 0.85545 0.86330 0.91461 0.86720 0.92041 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.13 10.39 127.77 1.33 3.45 16 2 N -0.51 -16.71 3.06 -678.19 -2.07 -18.79 16 3 C 0.29 9.93 7.64 132.82 1.01 10.94 16 4 N -0.51 -14.63 11.16 -196.26 -2.19 -16.82 16 5 C 0.27 6.51 12.49 180.25 2.25 8.76 16 6 N -0.39 -12.65 2.71 -520.12 -1.41 -14.06 16 7 C 0.14 4.45 5.45 86.38 0.47 4.93 16 8 C -0.05 -2.06 1.05 -52.93 -0.06 -2.11 16 9 C -0.46 -25.14 7.86 25.60 0.20 -24.94 16 10 H 0.01 0.47 8.06 -2.91 -0.02 0.44 16 11 C 0.05 2.74 4.70 84.65 0.40 3.14 16 12 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 13 Si 0.94 45.11 24.92 68.60 1.71 46.82 16 14 H -0.27 -12.06 7.04 99.48 0.70 -11.36 16 15 H -0.23 -9.94 5.79 99.48 0.58 -9.37 16 16 H -0.32 -16.32 7.11 99.48 0.71 -15.61 16 17 C -0.15 -4.75 9.96 30.62 0.30 -4.44 16 18 C -0.18 -6.14 7.64 30.62 0.23 -5.91 16 19 C -0.15 -5.97 6.57 39.04 0.26 -5.71 16 20 C 0.57 25.48 7.37 84.93 0.63 26.11 16 21 O -0.50 -25.73 14.14 -4.65 -0.07 -25.80 16 22 N -0.56 -22.32 2.96 -806.89 -2.39 -24.71 16 23 C 0.09 3.10 9.99 127.77 1.28 4.37 16 24 C 0.71 26.02 8.12 179.21 1.45 27.47 16 25 O -0.57 -21.14 15.01 -4.02 -0.06 -21.20 16 26 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.10 2.06 7.38 -2.39 -0.02 2.04 16 28 H 0.11 2.05 8.01 -2.39 -0.02 2.04 16 29 H 0.28 2.97 8.06 -2.91 -0.02 2.94 16 30 H 0.07 2.82 5.80 -2.39 -0.01 2.81 16 31 H 0.14 2.84 8.09 -2.39 -0.02 2.83 16 32 H 0.26 15.75 8.31 -92.72 -0.77 14.98 16 33 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.07 2.64 7.19 -2.39 -0.02 2.62 16 37 H 0.11 3.49 6.80 -2.39 -0.02 3.47 16 38 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -80.59 323.64 4.53 -76.06 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.95 Total: 12.49 kcal Atomic # 6 Polarization: 36.29 SS G_CDS: 9.76 Total: 46.05 kcal Atomic # 7 Polarization: -126.65 SS G_CDS: -7.76 Total: -134.42 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -0.13 Total: -47.00 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.71 Total: 46.82 kcal Total: -80.59 4.53 -76.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594880808.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.019 kcal (2) G-P(sol) polarization free energy of solvation -80.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds