Wall clock time and date at job start Fri Apr 10 2020 14:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81399 * 109.47109 * 2 1 4 4 O 1.42108 * 110.54362 * 68.37253 * 3 2 1 5 5 O 1.42101 * 110.54432 * 291.62549 * 3 2 1 6 6 N 1.65606 * 104.45119 * 179.97438 * 3 2 1 7 7 C 1.46499 * 119.99707 * 65.00354 * 6 3 2 8 8 H 1.08997 * 109.47534 * 24.99650 * 7 6 3 9 9 C 1.53007 * 109.46635 * 264.99769 * 7 6 3 10 10 C 1.50698 * 109.47245 * 145.00488 * 7 6 3 11 11 O 1.21286 * 119.99809 * 26.79937 * 10 7 6 12 12 N 1.34777 * 119.99971 * 206.81014 * 10 7 6 13 13 C 1.46496 * 119.99890 * 184.96484 * 12 10 7 14 14 C 1.52999 * 109.46981 * 175.30026 * 13 12 10 15 15 C 1.50705 * 115.55216 * 64.70992 * 14 13 12 16 16 H 1.08003 * 119.99557 * 265.56348 * 15 14 13 17 17 C 1.37869 * 120.00075 * 85.56863 * 15 14 13 18 18 N 1.31520 * 119.99893 * 2.22337 * 17 15 14 19 19 Si 1.86799 * 120.00283 * 182.22104 * 17 15 14 20 20 H 1.48501 * 109.47138 * 59.99811 * 19 17 15 21 21 H 1.48492 * 109.47270 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47062 * 300.00020 * 19 17 15 23 23 C 1.53005 * 117.49649 * 279.03721 * 14 13 12 24 24 C 1.52995 * 117.49852 * 210.38224 * 14 13 12 25 25 H 1.08992 * 109.46746 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47028 * 300.00144 * 1 2 3 27 27 H 1.08999 * 109.46870 * 59.99735 * 1 2 3 28 28 H 1.09001 * 109.47475 * 240.00426 * 2 1 3 29 29 H 1.08996 * 109.47100 * 119.99783 * 2 1 3 30 30 H 0.97000 * 119.99864 * 245.00394 * 6 3 2 31 31 H 1.08997 * 109.47279 * 295.18169 * 9 7 6 32 32 H 1.08995 * 109.46776 * 175.18264 * 9 7 6 33 33 H 1.09002 * 109.47271 * 55.18614 * 9 7 6 34 34 H 0.96998 * 119.99701 * 4.96521 * 12 10 7 35 35 H 1.09003 * 109.46871 * 295.29739 * 13 12 10 36 36 H 1.08999 * 109.47405 * 55.29547 * 13 12 10 37 37 H 0.97001 * 119.99842 * 185.01917 * 18 17 15 38 38 H 1.09002 * 117.49650 * 0.02562 * 23 14 13 39 39 H 1.09005 * 117.49786 * 145.01949 * 23 14 13 40 40 H 1.09006 * 117.50150 * 214.97765 * 24 14 13 41 41 H 1.09009 * 117.50181 * 359.97160 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3439 1.2370 5 8 1.8386 2.3439 -1.2370 6 7 3.7844 1.5653 0.0007 7 6 4.4676 0.9670 -1.1488 8 1 3.8510 1.0851 -2.0398 9 6 4.7020 -0.5217 -0.8845 10 6 5.7921 1.6543 -1.3596 11 8 6.3611 2.1745 -0.4233 12 7 6.3442 1.6910 -2.5886 13 6 7.6803 2.2624 -2.7745 14 6 8.1165 2.0764 -4.2292 15 6 7.2949 2.8156 -5.2537 16 1 6.4748 2.3176 -5.7496 17 6 7.5902 4.1274 -5.5581 18 7 8.6158 4.7202 -4.9867 19 14 6.5338 5.0630 -6.7821 20 1 5.1339 5.1154 -6.2893 21 1 7.0569 6.4444 -6.9332 22 1 6.5702 4.3728 -8.0965 23 6 8.6822 0.7119 -4.6281 24 6 9.6135 1.9202 -4.5033 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 4.2983 1.8766 0.7623 31 1 5.3877 -0.6382 -0.0453 32 1 5.1323 -0.9849 -1.7723 33 1 3.7529 -1.0025 -0.6476 34 1 5.8568 1.3392 -3.3498 35 1 7.6573 3.3255 -2.5352 36 1 8.3865 1.7569 -2.1159 37 1 8.7807 5.6630 -5.1444 38 1 8.7432 -0.0533 -3.8543 39 1 8.4604 0.3490 -5.6317 40 1 10.0042 2.3518 -5.4249 41 1 10.2878 1.9504 -3.6473 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597610937.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:48 Heat of formation + Delta-G solvation = -93.939422 kcal Electronic energy + Delta-G solvation = -23505.259274 eV Core-core repulsion = 19933.988599 eV Total energy + Delta-G solvation = -3571.270674 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.54253 -37.25914 -36.87278 -36.08904 -35.40090 -33.53593 -33.43866 -31.97981 -30.06753 -26.71109 -25.42017 -24.50880 -23.39618 -21.21517 -20.02478 -19.52357 -19.41023 -18.19301 -17.30486 -16.49206 -16.17547 -15.86554 -15.57109 -14.97134 -14.72276 -14.62311 -14.30474 -13.88841 -13.71352 -13.33285 -13.14458 -13.05342 -12.69316 -12.46080 -12.23690 -12.16804 -11.98517 -11.88833 -11.81903 -11.74729 -11.59861 -10.99601 -10.93640 -10.86396 -10.55127 -10.28663 -9.97822 -9.64437 -9.28112 -9.09084 -8.52251 -8.34272 -8.15229 -6.09735 -4.19625 0.04141 2.46783 3.01012 3.28696 3.34513 3.36623 3.56766 3.67223 3.96535 4.24938 4.35778 4.47933 4.68621 4.80022 4.91023 4.92427 5.16640 5.19748 5.21357 5.27398 5.34222 5.45870 5.54044 5.78193 5.89244 5.98321 6.28355 6.40718 6.48998 6.64815 6.79375 6.89945 7.07669 7.16238 7.35715 7.48251 7.78889 8.14013 8.29907 8.68280 8.82022 9.48655 10.98139 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.017724 B = 0.003896 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.441897 B = 7184.285904 C = 7932.042856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.636 4.636 3 S 2.610 3.390 4 O -0.956 6.956 5 O -0.950 6.950 6 N -1.101 6.101 7 C 0.125 3.875 8 H 0.111 0.889 9 C -0.170 4.170 10 C 0.507 3.493 11 O -0.548 6.548 12 N -0.696 5.696 13 C 0.162 3.838 14 C 0.024 3.976 15 C -0.502 4.502 16 H 0.060 0.940 17 C 0.075 3.925 18 N -0.875 5.875 19 Si 0.889 3.111 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.211 4.211 24 C -0.142 4.142 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.426 0.574 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.403 0.597 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.262 0.738 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.034 -13.101 8.309 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.765 4.765 3 S 2.701 3.299 4 O -0.946 6.946 5 O -0.940 6.940 6 N -0.862 5.862 7 C 0.014 3.986 8 H 0.129 0.871 9 C -0.229 4.229 10 C 0.289 3.711 11 O -0.426 6.426 12 N -0.345 5.345 13 C 0.039 3.961 14 C 0.024 3.976 15 C -0.540 4.540 16 H 0.078 0.922 17 C -0.130 4.130 18 N -0.511 5.511 19 Si 0.717 3.283 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.248 4.248 24 C -0.180 4.180 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.264 0.736 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.238 0.762 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.023 -11.806 8.767 18.995 hybrid contribution -0.266 -0.150 -0.719 0.781 sum -12.289 -11.956 8.048 18.941 Atomic orbital electron populations 1.21505 0.90441 1.05032 1.03573 1.30659 1.07345 1.26689 1.11804 1.05080 0.73000 0.77247 0.74526 1.93610 1.83024 1.72863 1.45117 1.93639 1.83216 1.71684 1.45416 1.55415 1.25505 1.77524 1.27749 1.20732 0.94664 0.93448 0.89778 0.87090 1.22346 1.03204 0.93210 1.04176 1.20248 0.86411 0.80611 0.83820 1.90659 1.63499 1.46651 1.41808 1.45985 1.19856 1.60496 1.08170 1.21050 0.80333 0.98151 0.96535 1.19029 0.93778 0.93325 0.91497 1.20315 1.15140 0.96837 1.21691 0.92175 1.24975 0.94400 0.97790 0.95804 1.69980 1.26543 1.11075 1.43454 0.86706 0.80906 0.79038 0.81683 1.20025 1.21258 1.20193 1.23026 1.09259 0.91898 1.00620 1.22470 0.93922 1.00048 1.01581 0.90007 0.90977 0.90818 0.84742 0.84743 0.73631 0.90843 0.90122 0.91398 0.76227 0.91175 0.94094 0.92769 0.91736 0.90353 0.89522 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.92 37.16 0.37 -0.53 16 2 C -0.64 -4.08 5.83 37.16 0.22 -3.87 16 3 S 2.61 29.22 5.44 -107.50 -0.58 28.64 16 4 O -0.96 -13.56 18.08 -57.54 -1.04 -14.60 16 5 O -0.95 -14.20 17.39 -57.54 -1.00 -15.20 16 6 N -1.10 -13.08 5.31 -5.88 -0.03 -13.11 16 7 C 0.13 1.51 3.20 -69.08 -0.22 1.29 16 8 H 0.11 1.19 7.48 -51.93 -0.39 0.80 16 9 C -0.17 -1.44 9.48 37.16 0.35 -1.09 16 10 C 0.51 8.67 7.02 -10.99 -0.08 8.60 16 11 O -0.55 -11.25 16.14 5.55 0.09 -11.16 16 12 N -0.70 -12.61 5.47 -60.30 -0.33 -12.94 16 13 C 0.16 3.52 5.51 -4.04 -0.02 3.50 16 14 C 0.02 0.55 1.47 -155.66 -0.23 0.33 16 15 C -0.50 -12.65 8.58 -34.44 -0.30 -12.95 16 16 H 0.06 1.47 7.81 -52.48 -0.41 1.06 16 17 C 0.07 1.96 5.42 -17.82 -0.10 1.87 16 18 N -0.87 -24.08 12.68 55.43 0.70 -23.38 16 19 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 20 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 C -0.21 -4.18 9.96 -26.69 -0.27 -4.44 16 24 C -0.14 -3.16 9.17 -26.70 -0.24 -3.41 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.13 0.63 6.88 -51.92 -0.36 0.27 16 29 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.43 5.27 8.09 -34.47 -0.28 4.99 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.37 5.73 -51.93 -0.30 0.07 16 34 H 0.40 6.56 8.32 -40.82 -0.34 6.22 16 35 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 36 H 0.04 0.87 8.10 -51.93 -0.42 0.44 16 37 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 41 H 0.06 1.35 8.14 -51.92 -0.42 0.93 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -34.17 357.22 -8.62 -42.79 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -6.28 Total: 8.70 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -0.51 Total: -10.70 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.34 Total: -49.43 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -1.95 Total: -40.96 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 29.22 SS G_CDS: -0.58 Total: 28.64 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.17 -8.62 -42.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597610937.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.145 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds