Wall clock time and date at job start Fri Apr 10 2020 14:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81399 * 109.47109 * 2 1 4 4 O 1.42108 * 110.54362 * 68.37253 * 3 2 1 5 5 O 1.42101 * 110.54432 * 291.62549 * 3 2 1 6 6 N 1.65606 * 104.45119 * 179.97438 * 3 2 1 7 7 C 1.46499 * 119.99707 * 65.00354 * 6 3 2 8 8 H 1.08997 * 109.47534 * 24.99650 * 7 6 3 9 9 C 1.53007 * 109.46635 * 264.99769 * 7 6 3 10 10 C 1.50698 * 109.47245 * 145.00488 * 7 6 3 11 11 O 1.21286 * 119.99809 * 26.79937 * 10 7 6 12 12 N 1.34777 * 119.99971 * 206.81014 * 10 7 6 13 13 C 1.46496 * 119.99890 * 184.96484 * 12 10 7 14 14 C 1.52999 * 109.46981 * 175.30026 * 13 12 10 15 15 C 1.50705 * 115.55216 * 64.70992 * 14 13 12 16 16 H 1.08003 * 119.99557 * 265.56348 * 15 14 13 17 17 C 1.37869 * 120.00075 * 85.56863 * 15 14 13 18 18 N 1.31520 * 119.99893 * 2.22337 * 17 15 14 19 19 Si 1.86799 * 120.00283 * 182.22104 * 17 15 14 20 20 H 1.48501 * 109.47138 * 59.99811 * 19 17 15 21 21 H 1.48492 * 109.47270 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47062 * 300.00020 * 19 17 15 23 23 C 1.53005 * 117.49649 * 279.03721 * 14 13 12 24 24 C 1.52995 * 117.49852 * 210.38224 * 14 13 12 25 25 H 1.08992 * 109.46746 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47028 * 300.00144 * 1 2 3 27 27 H 1.08999 * 109.46870 * 59.99735 * 1 2 3 28 28 H 1.09001 * 109.47475 * 240.00426 * 2 1 3 29 29 H 1.08996 * 109.47100 * 119.99783 * 2 1 3 30 30 H 0.97000 * 119.99864 * 245.00394 * 6 3 2 31 31 H 1.08997 * 109.47279 * 295.18169 * 9 7 6 32 32 H 1.08995 * 109.46776 * 175.18264 * 9 7 6 33 33 H 1.09002 * 109.47271 * 55.18614 * 9 7 6 34 34 H 0.96998 * 119.99701 * 4.96521 * 12 10 7 35 35 H 1.09003 * 109.46871 * 295.29739 * 13 12 10 36 36 H 1.08999 * 109.47405 * 55.29547 * 13 12 10 37 37 H 0.97001 * 119.99842 * 185.01917 * 18 17 15 38 38 H 1.09002 * 117.49650 * 0.02562 * 23 14 13 39 39 H 1.09005 * 117.49786 * 145.01949 * 23 14 13 40 40 H 1.09006 * 117.50150 * 214.97765 * 24 14 13 41 41 H 1.09009 * 117.50181 * 359.97160 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3439 1.2370 5 8 1.8386 2.3439 -1.2370 6 7 3.7844 1.5653 0.0007 7 6 4.4676 0.9670 -1.1488 8 1 3.8510 1.0851 -2.0398 9 6 4.7020 -0.5217 -0.8845 10 6 5.7921 1.6543 -1.3596 11 8 6.3611 2.1745 -0.4233 12 7 6.3442 1.6910 -2.5886 13 6 7.6803 2.2624 -2.7745 14 6 8.1165 2.0764 -4.2292 15 6 7.2949 2.8156 -5.2537 16 1 6.4748 2.3176 -5.7496 17 6 7.5902 4.1274 -5.5581 18 7 8.6158 4.7202 -4.9867 19 14 6.5338 5.0630 -6.7821 20 1 5.1339 5.1154 -6.2893 21 1 7.0569 6.4444 -6.9332 22 1 6.5702 4.3728 -8.0965 23 6 8.6822 0.7119 -4.6281 24 6 9.6135 1.9202 -4.5033 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 4.2983 1.8766 0.7623 31 1 5.3877 -0.6382 -0.0453 32 1 5.1323 -0.9849 -1.7723 33 1 3.7529 -1.0025 -0.6476 34 1 5.8568 1.3392 -3.3498 35 1 7.6573 3.3255 -2.5352 36 1 8.3865 1.7569 -2.1159 37 1 8.7807 5.6630 -5.1444 38 1 8.7432 -0.0533 -3.8543 39 1 8.4604 0.3490 -5.6317 40 1 10.0042 2.3518 -5.4249 41 1 10.2878 1.9504 -3.6473 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597610937.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:47 Heat of formation + Delta-G solvation = -121.612006 kcal Electronic energy + Delta-G solvation = -23506.459247 eV Core-core repulsion = 19933.988599 eV Total energy + Delta-G solvation = -3572.470648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.91403 -38.57898 -38.21732 -37.07175 -36.46410 -35.01470 -34.03810 -33.94691 -30.94196 -28.28014 -27.25332 -25.22863 -24.35260 -22.90838 -21.44644 -21.08609 -20.40348 -19.25075 -18.52110 -17.78039 -17.32955 -17.12551 -16.69543 -16.59341 -16.24574 -15.82457 -15.37146 -15.12132 -14.76728 -14.41790 -14.33054 -14.11506 -13.70535 -13.52421 -13.42728 -13.26026 -13.18759 -13.14316 -12.92084 -12.83831 -12.79122 -12.60739 -12.39747 -12.32610 -11.99729 -11.57664 -11.41469 -11.02905 -10.94596 -10.53405 -10.40951 -10.02281 -9.84313 -8.10412 -6.23313 -0.77676 1.42858 1.45591 1.49513 1.50439 1.76299 2.32800 2.43514 2.80997 3.19173 3.21457 3.46314 3.63879 3.76098 3.94166 3.99839 4.08379 4.25275 4.35410 4.44040 4.57332 4.66427 4.72389 4.73933 4.79345 4.91466 4.98635 5.03647 5.07119 5.16924 5.29192 5.31397 5.57091 5.61113 5.71515 5.78198 5.92072 6.36761 6.72014 6.85555 7.30676 7.47090 8.96974 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.017724 B = 0.003896 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.441897 B = 7184.285904 C = 7932.042856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.600 4.600 3 S 2.601 3.399 4 O -0.996 6.996 5 O -0.999 6.999 6 N -1.108 6.108 7 C 0.129 3.871 8 H 0.127 0.873 9 C -0.167 4.167 10 C 0.500 3.500 11 O -0.588 6.588 12 N -0.694 5.694 13 C 0.178 3.822 14 C 0.002 3.998 15 C -0.504 4.504 16 H 0.066 0.934 17 C 0.025 3.975 18 N -0.908 5.908 19 Si 0.944 3.056 20 H -0.275 1.275 21 H -0.293 1.293 22 H -0.266 1.266 23 C -0.171 4.171 24 C -0.157 4.157 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.166 0.834 29 H 0.166 0.834 30 H 0.422 0.578 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.413 0.587 35 H 0.022 0.978 36 H 0.044 0.956 37 H 0.257 0.743 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.924 -16.644 8.084 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.734 4.734 3 S 2.699 3.301 4 O -0.987 6.987 5 O -0.989 6.989 6 N -0.867 5.867 7 C 0.018 3.982 8 H 0.145 0.855 9 C -0.226 4.226 10 C 0.285 3.715 11 O -0.469 6.469 12 N -0.344 5.344 13 C 0.054 3.946 14 C 0.001 3.999 15 C -0.541 4.541 16 H 0.084 0.916 17 C -0.176 4.176 18 N -0.546 5.546 19 Si 0.770 3.230 20 H -0.201 1.201 21 H -0.219 1.219 22 H -0.191 1.191 23 C -0.208 4.208 24 C -0.195 4.195 25 H 0.129 0.871 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.183 0.817 29 H 0.184 0.816 30 H 0.258 0.742 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.250 0.750 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.919 -15.325 8.514 22.385 hybrid contribution 0.278 0.879 -0.609 1.105 sum -13.642 -14.446 7.905 21.384 Atomic orbital electron populations 1.21718 0.89899 1.06824 1.03582 1.30383 1.07533 1.20530 1.14966 1.05184 0.72484 0.79631 0.72786 1.93552 1.83302 1.75618 1.46221 1.93572 1.83616 1.74844 1.46820 1.55413 1.25711 1.78141 1.27414 1.20882 0.91496 0.95156 0.90629 0.85518 1.22414 1.05393 0.90106 1.04639 1.21257 0.87899 0.79733 0.82638 1.90637 1.65069 1.48259 1.42923 1.45883 1.18817 1.60472 1.09247 1.20579 0.82480 0.95549 0.96023 1.19042 0.93696 0.95812 0.91363 1.20698 1.15039 0.96915 1.21483 0.91556 1.25671 0.95478 0.99003 0.97450 1.70107 1.28236 1.10902 1.45322 0.85840 0.79240 0.77661 0.80262 1.20078 1.21914 1.19071 1.23012 1.05189 0.90862 1.01738 1.22390 0.94045 1.02361 1.00747 0.87089 0.91129 0.91091 0.81666 0.81577 0.74217 0.91512 0.88781 0.87454 0.75006 0.95975 0.93799 0.93368 0.88819 0.89604 0.91996 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.92 71.98 0.71 -0.64 16 2 C -0.60 -4.98 5.83 71.98 0.42 -4.56 16 3 S 2.60 55.30 5.44 -56.49 -0.31 54.99 16 4 O -1.00 -28.41 18.08 -127.65 -2.31 -30.72 16 5 O -1.00 -29.66 17.39 -127.65 -2.22 -31.88 16 6 N -1.11 -25.20 5.31 -172.52 -0.92 -26.11 16 7 C 0.13 2.87 3.20 44.25 0.14 3.01 16 8 H 0.13 2.40 7.48 -2.39 -0.02 2.38 16 9 C -0.17 -2.15 9.48 71.98 0.68 -1.46 16 10 C 0.50 16.92 7.02 87.66 0.62 17.53 16 11 O -0.59 -24.70 16.14 -3.05 -0.05 -24.75 16 12 N -0.69 -24.79 5.47 -463.06 -2.53 -27.32 16 13 C 0.18 7.85 5.51 86.38 0.48 8.33 16 14 C 0.00 0.07 1.47 -52.93 -0.08 -0.01 16 15 C -0.50 -25.28 8.58 25.60 0.22 -25.06 16 16 H 0.07 3.17 7.81 -2.91 -0.02 3.15 16 17 C 0.02 1.30 5.42 84.65 0.46 1.76 16 18 N -0.91 -51.59 12.68 21.45 0.27 -51.32 16 19 Si 0.94 42.72 29.54 68.60 2.03 44.75 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 C -0.17 -6.39 9.96 30.62 0.30 -6.08 16 24 C -0.16 -7.00 9.17 30.61 0.28 -6.72 16 25 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.17 0.49 6.88 -2.39 -0.02 0.47 16 29 H 0.17 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.42 10.49 8.09 -96.74 -0.78 9.71 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.11 0.53 5.73 -2.39 -0.01 0.51 16 34 H 0.41 12.84 8.32 -92.71 -0.77 12.07 16 35 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 37 H 0.26 14.27 8.32 -92.71 -0.77 13.50 16 38 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 39 H 0.09 3.10 8.14 -2.38 -0.02 3.08 16 40 H 0.06 3.04 8.14 -2.38 -0.02 3.02 16 41 H 0.07 2.94 8.14 -2.38 -0.02 2.92 16 Total: -1.00 -78.25 357.22 -2.31 -80.56 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -0.51 Total: 25.70 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 4.24 Total: -13.90 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -3.18 Total: -104.75 kcal Atomic # 8 Polarization: -82.77 SS G_CDS: -4.58 Total: -87.35 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: 55.30 SS G_CDS: -0.31 Total: 54.99 kcal Total: -78.25 -2.31 -80.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597610937.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.050 kcal (2) G-P(sol) polarization free energy of solvation -78.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds