Wall clock time and date at job start Fri Apr 10 2020 14:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.45761 * 117.94398 * 2 1 4 4 C 1.52912 * 110.48587 * 199.07799 * 3 2 1 5 5 C 1.53350 * 108.67816 * 309.24266 * 4 3 2 6 6 H 1.09001 * 109.67213 * 307.76947 * 5 4 3 7 7 N 1.46494 * 109.67591 * 187.26537 * 5 4 3 8 8 S 1.65608 * 119.99583 * 145.00272 * 7 5 4 9 9 O 1.42102 * 104.27529 * 181.07038 * 8 7 5 10 10 O 1.42093 * 104.27575 * 308.92948 * 8 7 5 11 11 C 1.81397 * 104.44943 * 65.00070 * 8 7 5 12 12 C 1.52996 * 109.47172 * 179.97438 * 11 8 7 13 13 C 1.53005 * 109.47513 * 179.97438 * 12 11 8 14 14 C 1.50696 * 109.47104 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00183 * 0.02562 * 14 13 12 16 16 C 1.37887 * 119.99775 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99588 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00021 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47026 * 59.99968 * 18 16 14 20 20 H 1.48499 * 109.47376 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47125 * 300.00509 * 18 16 14 22 22 C 1.53070 * 108.42039 * 67.53382 * 5 4 3 23 23 C 1.33348 * 117.95004 * 180.02562 * 2 1 3 24 24 O 1.21279 * 118.24711 * 357.74977 * 23 2 1 25 25 H 1.08993 * 109.47439 * 90.00180 * 1 2 3 26 26 H 1.09008 * 109.47037 * 209.99854 * 1 2 3 27 27 H 1.09001 * 109.47376 * 329.99420 * 1 2 3 28 28 H 1.08995 * 109.29977 * 78.76396 * 3 2 1 29 29 H 1.09002 * 109.13026 * 319.28200 * 3 2 1 30 30 H 1.09004 * 109.60189 * 189.49105 * 4 3 2 31 31 H 1.09001 * 109.74307 * 69.08514 * 4 3 2 32 32 H 0.96995 * 120.00292 * 325.27735 * 7 5 4 33 33 H 1.09002 * 109.47515 * 299.99988 * 11 8 7 34 34 H 1.08999 * 109.47173 * 59.99866 * 11 8 7 35 35 H 1.09002 * 109.47161 * 299.99950 * 12 11 8 36 36 H 1.08999 * 109.46961 * 60.00006 * 12 11 8 37 37 H 1.09002 * 109.46948 * 300.00181 * 13 12 11 38 38 H 1.08999 * 109.46920 * 60.00082 * 13 12 11 39 39 H 0.96994 * 119.99369 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.40391 * 71.22718 * 22 5 4 41 41 H 1.09004 * 109.40242 * 190.97266 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2877 0.0000 4 6 3.5947 1.1260 -0.4682 5 6 4.2493 -0.0011 0.3396 6 1 4.1093 0.1818 1.4050 7 7 5.6806 -0.0605 0.0333 8 16 6.7647 -0.4666 1.2176 9 8 8.0295 -0.3972 0.5736 10 8 6.4440 0.3991 2.2978 11 6 6.3564 -2.1839 1.6353 12 6 7.3007 -2.6803 2.7320 13 6 6.9561 -4.1287 3.0849 14 6 7.8858 -4.6173 4.1655 15 1 8.6462 -3.9605 4.5613 16 6 7.7650 -5.9028 4.6496 17 7 6.8386 -6.7024 4.1678 18 14 8.9179 -6.5087 5.9885 19 1 8.7676 -5.6555 7.1946 20 1 8.5833 -7.9144 6.3311 21 1 10.3199 -6.4381 5.5039 22 6 3.5839 -1.3238 -0.0486 23 6 2.0900 -1.1779 -0.0005 24 8 1.4160 -2.1853 0.0410 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 2.1398 1.6998 1.0090 29 1 1.6259 1.9690 -0.6718 30 1 4.1382 2.0566 -0.3043 31 1 3.6126 0.8741 -1.5285 32 1 5.9938 0.1419 -0.8621 33 1 5.3272 -2.2368 1.9903 34 1 6.4678 -2.8096 0.7498 35 1 8.3298 -2.6276 2.3766 36 1 7.1897 -2.0547 3.6176 37 1 5.9270 -4.1810 3.4404 38 1 7.0668 -4.7546 2.1994 39 1 6.7539 -7.6067 4.5081 40 1 3.8880 -1.5995 -1.0584 41 1 3.8944 -2.1033 0.6472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618900424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:03 Heat of formation + Delta-G solvation = -121.407634 kcal Electronic energy + Delta-G solvation = -23352.948270 eV Core-core repulsion = 19780.486485 eV Total energy + Delta-G solvation = -3572.461785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.79554 -37.47862 -36.90663 -35.85634 -35.65149 -34.69660 -32.20503 -31.74751 -30.02191 -27.82690 -26.89467 -24.63532 -23.68141 -22.48823 -20.70633 -19.65996 -18.86550 -17.49960 -17.26695 -16.85372 -16.58433 -16.43704 -15.83809 -15.68609 -14.99055 -14.71222 -14.50465 -14.44756 -14.18420 -13.62243 -12.96515 -12.91993 -12.67626 -12.60166 -12.32415 -12.18649 -12.02490 -11.95226 -11.85793 -11.81237 -11.66535 -11.31868 -11.23160 -10.89244 -10.86603 -10.46885 -10.20521 -9.95354 -9.78039 -9.35738 -9.11385 -9.06434 -8.39320 -6.04135 -4.07661 0.36424 2.39448 2.61274 2.73541 3.32993 3.37125 3.39932 3.83741 4.10518 4.16977 4.25180 4.35155 4.43180 4.44647 4.74000 4.79558 4.94657 5.03486 5.07827 5.12933 5.19269 5.22058 5.31967 5.37986 5.43236 5.53546 5.58930 5.76765 5.87895 6.01835 6.24243 6.42243 6.74317 6.86243 7.10279 7.57671 7.67429 7.88878 7.93311 8.33423 8.98348 9.56987 11.06946 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.016549 B = 0.003607 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.519939 B = 7761.646192 C = 9048.679293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.612 5.612 3 C 0.114 3.886 4 C -0.139 4.139 5 C 0.145 3.855 6 H 0.104 0.896 7 N -1.118 6.118 8 S 2.597 3.403 9 O -0.960 6.960 10 O -0.960 6.960 11 C -0.611 4.611 12 C -0.105 4.105 13 C 0.031 3.969 14 C -0.528 4.528 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.163 4.163 23 C 0.521 3.479 24 O -0.545 6.545 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.417 0.583 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.262 0.738 40 H 0.112 0.888 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.876 18.396 -12.519 24.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.346 5.346 3 C -0.009 4.009 4 C -0.178 4.178 5 C 0.037 3.963 6 H 0.122 0.878 7 N -0.874 5.874 8 S 2.694 3.306 9 O -0.951 6.951 10 O -0.950 6.950 11 C -0.743 4.743 12 C -0.145 4.145 13 C -0.008 4.008 14 C -0.567 4.567 15 H 0.076 0.924 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.722 3.278 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.204 4.204 23 C 0.308 3.692 24 O -0.422 6.422 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.251 0.749 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.130 0.870 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.665 18.259 -11.957 24.292 hybrid contribution 0.263 -0.888 0.134 0.936 sum -10.402 17.370 -11.823 23.446 Atomic orbital electron populations 1.21710 0.79329 1.03575 1.02015 1.47289 1.07653 1.06047 1.73635 1.21430 0.92459 0.84675 1.02366 1.22169 0.94705 1.00041 1.00870 1.20887 0.80065 0.94061 1.01278 0.87800 1.55813 1.17058 1.86570 1.27940 1.05427 0.73396 0.78122 0.73683 1.93589 1.39526 1.87361 1.74590 1.93573 1.84076 1.62660 1.54716 1.30657 1.10933 1.22058 1.10641 1.21504 0.96274 1.02636 0.94041 1.19061 0.97296 0.87576 0.96836 1.21206 1.16905 0.97960 1.20604 0.92433 1.25022 0.95585 0.96832 0.96899 1.69950 1.33128 1.07415 1.42778 0.86614 0.81221 0.77745 0.82188 1.20124 1.21244 1.20137 1.22438 0.91337 1.00133 1.06507 1.19974 0.90470 0.82809 0.75928 1.90758 1.66106 1.35687 1.49632 0.92647 0.89952 0.91160 0.90841 0.89962 0.88464 0.90059 0.74933 0.85499 0.85009 0.91510 0.91545 0.96076 0.96069 0.92811 0.86992 0.87026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 10.24 59.85 0.61 1.17 16 2 N -0.61 -5.17 3.21 -182.86 -0.59 -5.76 16 3 C 0.11 0.60 6.33 -4.49 -0.03 0.57 16 4 C -0.14 -0.74 5.56 -26.60 -0.15 -0.89 16 5 C 0.15 1.18 2.77 -67.72 -0.19 1.00 16 6 H 0.10 0.92 7.48 -51.93 -0.39 0.53 16 7 N -1.12 -9.85 5.38 -4.71 -0.03 -9.88 16 8 S 2.60 34.93 5.44 -107.50 -0.58 34.34 16 9 O -0.96 -15.80 18.08 -57.54 -1.04 -16.84 16 10 O -0.96 -15.63 17.40 -57.54 -1.00 -16.63 16 11 C -0.61 -8.98 5.55 37.16 0.21 -8.77 16 12 C -0.11 -2.09 5.16 -26.73 -0.14 -2.23 16 13 C 0.03 0.77 4.97 -27.88 -0.14 0.64 16 14 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.67 5.46 -17.81 -0.10 1.57 16 17 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 18 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.16 -1.52 5.56 -28.10 -0.16 -1.68 16 23 C 0.52 5.95 7.47 -11.87 -0.09 5.87 16 24 O -0.54 -8.60 16.18 5.56 0.09 -8.51 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.77 7.13 -51.92 -0.37 0.40 16 27 H 0.07 0.33 8.01 -51.93 -0.42 -0.08 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.27 8.10 -51.93 -0.42 -0.16 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.36 8.12 -51.93 -0.42 -0.06 16 32 H 0.42 2.73 8.80 -34.48 -0.30 2.43 16 33 H 0.13 1.68 6.74 -51.92 -0.35 1.33 16 34 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 40 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.11 1.15 6.22 -51.93 -0.32 0.83 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -38.08 347.95 -9.01 -47.08 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.34 Total: -1.73 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -0.48 Total: -17.97 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.12 Total: -41.65 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -1.95 Total: -41.98 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 34.93 SS G_CDS: -0.58 Total: 34.34 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -38.08 -9.01 -47.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618900424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.326 kcal (2) G-P(sol) polarization free energy of solvation -38.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds