Wall clock time and date at job start Fri Apr 10 2020 14:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.45761 * 117.94398 * 2 1 4 4 C 1.52912 * 110.48587 * 199.07799 * 3 2 1 5 5 C 1.53350 * 108.67816 * 309.24266 * 4 3 2 6 6 H 1.09001 * 109.67213 * 307.76947 * 5 4 3 7 7 N 1.46494 * 109.67591 * 187.26537 * 5 4 3 8 8 S 1.65608 * 119.99583 * 145.00272 * 7 5 4 9 9 O 1.42102 * 104.27529 * 181.07038 * 8 7 5 10 10 O 1.42093 * 104.27575 * 308.92948 * 8 7 5 11 11 C 1.81397 * 104.44943 * 65.00070 * 8 7 5 12 12 C 1.52996 * 109.47172 * 179.97438 * 11 8 7 13 13 C 1.53005 * 109.47513 * 179.97438 * 12 11 8 14 14 C 1.50696 * 109.47104 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00183 * 0.02562 * 14 13 12 16 16 C 1.37887 * 119.99775 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99588 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00021 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47026 * 59.99968 * 18 16 14 20 20 H 1.48499 * 109.47376 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47125 * 300.00509 * 18 16 14 22 22 C 1.53070 * 108.42039 * 67.53382 * 5 4 3 23 23 C 1.33348 * 117.95004 * 180.02562 * 2 1 3 24 24 O 1.21279 * 118.24711 * 357.74977 * 23 2 1 25 25 H 1.08993 * 109.47439 * 90.00180 * 1 2 3 26 26 H 1.09008 * 109.47037 * 209.99854 * 1 2 3 27 27 H 1.09001 * 109.47376 * 329.99420 * 1 2 3 28 28 H 1.08995 * 109.29977 * 78.76396 * 3 2 1 29 29 H 1.09002 * 109.13026 * 319.28200 * 3 2 1 30 30 H 1.09004 * 109.60189 * 189.49105 * 4 3 2 31 31 H 1.09001 * 109.74307 * 69.08514 * 4 3 2 32 32 H 0.96995 * 120.00292 * 325.27735 * 7 5 4 33 33 H 1.09002 * 109.47515 * 299.99988 * 11 8 7 34 34 H 1.08999 * 109.47173 * 59.99866 * 11 8 7 35 35 H 1.09002 * 109.47161 * 299.99950 * 12 11 8 36 36 H 1.08999 * 109.46961 * 60.00006 * 12 11 8 37 37 H 1.09002 * 109.46948 * 300.00181 * 13 12 11 38 38 H 1.08999 * 109.46920 * 60.00082 * 13 12 11 39 39 H 0.96994 * 119.99369 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.40391 * 71.22718 * 22 5 4 41 41 H 1.09004 * 109.40242 * 190.97266 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2877 0.0000 4 6 3.5947 1.1260 -0.4682 5 6 4.2493 -0.0011 0.3396 6 1 4.1093 0.1818 1.4050 7 7 5.6806 -0.0605 0.0333 8 16 6.7647 -0.4666 1.2176 9 8 8.0295 -0.3972 0.5736 10 8 6.4440 0.3991 2.2978 11 6 6.3564 -2.1839 1.6353 12 6 7.3007 -2.6803 2.7320 13 6 6.9561 -4.1287 3.0849 14 6 7.8858 -4.6173 4.1655 15 1 8.6462 -3.9605 4.5613 16 6 7.7650 -5.9028 4.6496 17 7 6.8386 -6.7024 4.1678 18 14 8.9179 -6.5087 5.9885 19 1 8.7676 -5.6555 7.1946 20 1 8.5833 -7.9144 6.3311 21 1 10.3199 -6.4381 5.5039 22 6 3.5839 -1.3238 -0.0486 23 6 2.0900 -1.1779 -0.0005 24 8 1.4160 -2.1853 0.0410 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 2.1398 1.6998 1.0090 29 1 1.6259 1.9690 -0.6718 30 1 4.1382 2.0566 -0.3043 31 1 3.6126 0.8741 -1.5285 32 1 5.9938 0.1419 -0.8621 33 1 5.3272 -2.2368 1.9903 34 1 6.4678 -2.8096 0.7498 35 1 8.3298 -2.6276 2.3766 36 1 7.1897 -2.0547 3.6176 37 1 5.9270 -4.1810 3.4404 38 1 7.0668 -4.7546 2.1994 39 1 6.7539 -7.6067 4.5081 40 1 3.8880 -1.5995 -1.0584 41 1 3.8944 -2.1033 0.6472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618900424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:03 Heat of formation + Delta-G solvation = -151.537222 kcal Electronic energy + Delta-G solvation = -23354.254787 eV Core-core repulsion = 19780.486485 eV Total energy + Delta-G solvation = -3573.768302 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.54848 -38.38804 -38.01013 -37.07083 -36.49688 -36.38423 -34.18057 -32.44484 -30.72268 -29.64301 -27.53083 -25.72193 -25.08782 -23.16899 -22.42564 -20.60944 -19.73548 -18.67416 -18.44806 -17.99738 -17.58018 -17.26670 -17.05648 -16.81767 -16.47520 -16.00467 -15.53131 -15.27051 -15.20543 -14.53079 -14.31557 -14.08040 -13.70080 -13.58883 -13.47847 -13.33735 -13.21261 -13.15688 -12.99076 -12.88266 -12.73109 -12.66348 -12.59328 -12.30535 -12.11821 -11.89626 -11.74488 -11.39146 -11.22565 -10.94844 -10.57873 -10.48161 -9.73521 -8.22920 -6.34649 -0.76531 1.39510 1.42393 1.50386 1.54579 1.69927 2.04750 2.39348 2.71853 3.10470 3.19170 3.47899 3.64114 3.66342 3.71598 3.84101 3.90861 4.16959 4.33347 4.35604 4.43157 4.48078 4.61402 4.65939 4.67579 4.80932 4.89703 4.97002 4.99968 5.04930 5.07143 5.23472 5.41537 5.44596 5.61843 5.78767 6.11394 6.18576 6.39776 6.81482 7.08981 7.34915 8.88364 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.016549 B = 0.003607 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.519939 B = 7761.646192 C = 9048.679293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.606 5.606 3 C 0.108 3.892 4 C -0.133 4.133 5 C 0.142 3.858 6 H 0.098 0.902 7 N -1.095 6.095 8 S 2.634 3.366 9 O -0.987 6.987 10 O -0.985 6.985 11 C -0.619 4.619 12 C -0.105 4.105 13 C 0.030 3.970 14 C -0.554 4.554 15 H 0.062 0.938 16 C 0.001 3.999 17 N -0.931 5.931 18 Si 0.964 3.036 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.266 1.266 22 C -0.163 4.163 23 C 0.513 3.487 24 O -0.602 6.602 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.432 0.568 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.068 0.932 36 H 0.067 0.933 37 H -0.001 1.001 38 H 0.002 0.998 39 H 0.265 0.735 40 H 0.129 0.871 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.641 20.766 -13.231 26.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.338 5.338 3 C -0.014 4.014 4 C -0.172 4.172 5 C 0.034 3.966 6 H 0.116 0.884 7 N -0.856 5.856 8 S 2.728 3.272 9 O -0.977 6.977 10 O -0.974 6.974 11 C -0.749 4.749 12 C -0.144 4.144 13 C -0.008 4.008 14 C -0.592 4.592 15 H 0.081 0.919 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.788 3.212 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.191 1.191 22 C -0.204 4.204 23 C 0.301 3.699 24 O -0.484 6.484 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.119 0.881 28 H 0.101 0.899 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.115 0.885 32 H 0.270 0.730 33 H 0.156 0.844 34 H 0.165 0.835 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.017 0.983 38 H 0.020 0.980 39 H 0.073 0.927 40 H 0.147 0.853 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.412 20.676 -12.675 26.392 hybrid contribution 0.099 -1.559 0.299 1.591 sum -10.313 19.116 -12.376 24.999 Atomic orbital electron populations 1.21823 0.78781 1.03690 1.02729 1.47448 1.08322 1.06409 1.71654 1.21750 0.92448 0.83325 1.03912 1.22209 0.94438 0.99401 1.01167 1.21041 0.79199 0.94639 1.01739 0.88406 1.55307 1.16846 1.85600 1.27874 1.04146 0.72920 0.76664 0.73484 1.93550 1.41673 1.87351 1.75130 1.93543 1.84532 1.62885 1.56477 1.30690 1.10331 1.24228 1.09648 1.21292 0.97714 0.99334 0.96060 1.18961 0.95623 0.90891 0.95346 1.21731 1.17494 0.98529 1.21431 0.91946 1.25972 0.97236 0.97087 0.99380 1.70081 1.34873 1.07806 1.44316 0.85513 0.79188 0.77271 0.79191 1.19130 1.20744 1.19083 1.22439 0.90320 1.00520 1.07170 1.20323 0.91078 0.83018 0.75470 1.90731 1.67260 1.37754 1.52668 0.91644 0.92774 0.88070 0.89890 0.86789 0.86587 0.88466 0.73005 0.84383 0.83459 0.91294 0.91438 0.98253 0.98009 0.92673 0.85298 0.88582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 10.24 127.77 1.31 2.26 16 2 N -0.61 -9.17 3.21 -851.62 -2.73 -11.90 16 3 C 0.11 0.74 6.33 86.49 0.55 1.29 16 4 C -0.13 -0.91 5.56 30.68 0.17 -0.74 16 5 C 0.14 1.98 2.77 45.13 0.12 2.11 16 6 H 0.10 1.55 7.48 -2.39 -0.02 1.53 16 7 N -1.10 -16.57 5.38 -168.81 -0.91 -17.48 16 8 S 2.63 67.16 5.44 -56.49 -0.31 66.85 16 9 O -0.99 -31.01 18.08 -127.65 -2.31 -33.32 16 10 O -0.98 -30.68 17.40 -127.65 -2.22 -32.90 16 11 C -0.62 -18.07 5.55 71.98 0.40 -17.67 16 12 C -0.10 -4.23 5.16 30.59 0.16 -4.07 16 13 C 0.03 1.57 4.97 29.85 0.15 1.72 16 14 C -0.55 -31.84 9.11 25.60 0.23 -31.60 16 15 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 16 C 0.00 0.08 5.46 84.66 0.46 0.55 16 17 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 18 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 C -0.16 -2.90 5.56 29.71 0.17 -2.73 16 23 C 0.51 11.58 7.47 87.72 0.66 12.23 16 24 O -0.60 -19.85 16.18 -3.03 -0.05 -19.90 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.05 1.04 7.13 -2.38 -0.02 1.03 16 27 H 0.10 0.69 8.01 -2.39 -0.02 0.67 16 28 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.11 0.17 8.10 -2.39 -0.02 0.15 16 30 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.10 0.42 8.12 -2.39 -0.02 0.40 16 32 H 0.43 4.23 8.80 -96.75 -0.85 3.38 16 33 H 0.14 3.69 6.74 -2.39 -0.02 3.67 16 34 H 0.15 3.78 8.14 -2.39 -0.02 3.76 16 35 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.10 2.01 6.22 -2.39 -0.01 1.99 16 Total: -1.00 -84.78 347.95 -1.67 -86.44 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 0.18 Total: 8.87 kcal Atomic # 6 Polarization: -41.04 SS G_CDS: 4.37 Total: -36.66 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -3.36 Total: -86.08 kcal Atomic # 8 Polarization: -81.53 SS G_CDS: -4.58 Total: -86.11 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 67.16 SS G_CDS: -0.31 Total: 66.85 kcal Total: -84.78 -1.67 -86.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618900424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.093 kcal (2) G-P(sol) polarization free energy of solvation -84.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds