Wall clock time and date at job start Fri Apr 10 2020 14:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46764 * 124.34844 * 2 1 4 4 C 1.54476 * 105.47421 * 197.04337 * 3 2 1 5 5 H 1.08999 * 111.00664 * 92.71654 * 4 3 2 6 6 N 1.46502 * 110.97161 * 216.46596 * 4 3 2 7 7 C 1.34773 * 120.00100 * 198.82677 * 6 4 3 8 8 O 1.21579 * 120.00320 * 0.02562 * 7 6 4 9 9 N 1.34777 * 120.00019 * 179.97438 * 7 6 4 10 10 C 1.39461 * 120.00310 * 175.05981 * 9 7 6 11 11 C 1.38641 * 119.64960 * 174.23946 * 10 9 7 12 12 C 1.40819 * 118.67410 * 180.02562 * 11 10 9 13 13 C 1.41544 * 120.99909 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00027 * 147.42129 * 13 12 11 15 15 C 1.40026 * 119.99965 * 327.42578 * 13 12 11 16 16 N 1.30746 * 120.00086 * 359.80875 * 15 13 12 17 17 Si 1.86798 * 120.00286 * 179.80701 * 15 13 12 18 18 H 1.48505 * 109.46659 * 59.99879 * 17 15 13 19 19 H 1.48496 * 109.47379 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47339 * 300.00558 * 17 15 13 21 21 C 1.41164 * 118.00481 * 359.97438 * 12 11 10 22 22 C 1.36589 * 119.12785 * 359.97438 * 21 12 11 23 23 N 1.32068 * 121.25880 * 0.02562 * 22 21 12 24 24 C 1.54630 * 101.76481 * 334.58555 * 4 3 2 25 25 C 1.34419 * 124.35151 * 180.02562 * 2 1 3 26 26 O 1.21285 * 124.94092 * 359.59854 * 25 2 1 27 27 H 1.08998 * 109.46644 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46724 * 299.99484 * 1 2 3 29 29 H 1.08999 * 109.47032 * 59.99532 * 1 2 3 30 30 H 1.08997 * 110.24647 * 78.03879 * 3 2 1 31 31 H 1.08999 * 110.24627 * 316.04002 * 3 2 1 32 32 H 0.97002 * 119.99493 * 18.83424 * 6 4 3 33 33 H 0.96999 * 119.99780 * 355.06380 * 9 7 6 34 34 H 1.07998 * 120.66606 * 0.02562 * 11 10 9 35 35 H 0.97001 * 120.00384 * 179.97438 * 16 15 13 36 36 H 1.08002 * 120.43592 * 180.27734 * 21 12 11 37 37 H 1.08005 * 119.36904 * 180.02562 * 22 21 12 38 38 H 1.08997 * 110.48815 * 143.47575 * 24 4 3 39 39 H 1.09005 * 110.48388 * 266.12068 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7008 0.7489 -0.4363 5 1 3.8270 0.8452 -1.5147 6 7 4.7419 1.4910 0.2789 7 6 5.9993 1.5239 -0.2051 8 8 6.2696 0.9380 -1.2356 9 7 6.9570 2.2071 0.4527 10 6 8.2784 2.1570 0.0097 11 6 9.2359 2.9550 0.6167 12 6 10.5638 2.8885 0.1527 13 6 11.5807 3.6810 0.7369 14 1 12.5925 3.3070 0.7916 15 6 11.2750 4.9498 1.2441 16 7 10.0510 5.4041 1.1747 17 14 12.6159 5.9936 2.0200 18 1 13.6815 6.2544 1.0190 19 1 12.0381 7.2837 2.4748 20 1 13.1944 5.2725 3.1822 21 6 10.8506 2.0068 -0.9118 22 6 9.8404 1.2588 -1.4461 23 7 8.6055 1.3464 -0.9859 24 6 3.6898 -0.7378 -0.0112 25 6 2.2235 -1.1097 -0.0005 26 8 1.7947 -2.2442 0.0060 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 2.3309 1.6427 1.0004 31 1 1.8982 1.9385 -0.7099 32 1 4.5262 1.9587 1.1009 33 1 6.7271 2.7336 1.2342 34 1 8.9688 3.6146 1.4291 35 1 9.8391 6.2829 1.5263 36 1 11.8566 1.9213 -1.2955 37 1 10.0555 0.5826 -2.2604 38 1 4.2324 -1.3457 -0.7352 39 1 4.1198 -0.8532 0.9838 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871722494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:42 Heat of formation + Delta-G solvation = -11.275354 kcal Electronic energy + Delta-G solvation = -23862.945568 eV Core-core repulsion = 20192.108277 eV Total energy + Delta-G solvation = -3670.837292 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81509 -39.68713 -38.12627 -36.71539 -34.62334 -34.14584 -33.75589 -31.44970 -30.49441 -28.60369 -27.72516 -26.46412 -25.98739 -22.75265 -21.93557 -21.26862 -20.36010 -19.74277 -18.22517 -17.75316 -16.94457 -16.79192 -16.03548 -15.59559 -15.26918 -14.98797 -14.61685 -14.23556 -14.20742 -13.98493 -13.78857 -13.52184 -13.44271 -12.84441 -12.72850 -12.60767 -12.56724 -12.49602 -11.93568 -11.44209 -11.40484 -11.22320 -10.92010 -10.34362 -10.19545 -10.17252 -9.79814 -9.68166 -9.41066 -9.07345 -9.01098 -7.91044 -7.81162 -7.05174 -6.73250 -4.65480 2.37025 2.55360 2.64271 2.80803 2.93407 3.00713 3.03526 3.21641 3.71970 3.86399 4.07339 4.25284 4.44418 4.69593 4.71084 4.72193 4.98641 5.05223 5.11974 5.30515 5.39058 5.63364 5.66764 5.77454 5.90471 6.14591 6.45567 6.50808 6.56867 6.75677 6.77100 6.93204 7.11866 7.18359 7.36827 7.45692 7.86484 7.91474 8.07156 8.29186 8.43436 8.70028 8.75946 9.06203 9.65710 10.13480 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.029617 B = 0.002750 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.161466 B =10180.729512 C =10858.252148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.625 5.625 3 C 0.099 3.901 4 C 0.161 3.839 5 H 0.111 0.889 6 N -0.745 5.745 7 C 0.694 3.306 8 O -0.529 6.529 9 N -0.665 5.665 10 C 0.351 3.649 11 C -0.234 4.234 12 C 0.143 3.857 13 C -0.458 4.458 14 H 0.080 0.920 15 C 0.074 3.926 16 N -0.804 5.804 17 Si 0.917 3.083 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.264 1.264 21 C -0.276 4.276 22 C 0.116 3.884 23 N -0.549 5.549 24 C -0.169 4.169 25 C 0.522 3.478 26 O -0.532 6.532 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.394 0.606 33 H 0.405 0.595 34 H 0.134 0.866 35 H 0.280 0.720 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.111 0.889 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.709 -1.047 2.653 14.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.361 5.361 3 C -0.025 4.025 4 C 0.054 3.946 5 H 0.129 0.871 6 N -0.404 5.404 7 C 0.394 3.606 8 O -0.399 6.399 9 N -0.313 5.313 10 C 0.124 3.876 11 C -0.259 4.259 12 C 0.134 3.866 13 C -0.490 4.490 14 H 0.098 0.902 15 C -0.143 4.143 16 N -0.431 5.431 17 Si 0.742 3.258 18 H -0.190 1.190 19 H -0.203 1.203 20 H -0.189 1.189 21 C -0.299 4.299 22 C -0.038 4.038 23 N -0.268 5.268 24 C -0.211 4.211 25 C 0.310 3.690 26 O -0.408 6.408 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.229 0.771 33 H 0.240 0.760 34 H 0.152 0.848 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.130 0.870 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.610 -2.539 1.347 15.872 hybrid contribution 0.943 1.800 1.556 2.559 sum -14.668 -0.739 2.903 14.970 Atomic orbital electron populations 1.21573 0.77889 1.03833 1.01571 1.48146 1.06574 1.07102 1.74247 1.22283 0.90056 0.87559 1.02588 1.21426 0.85128 0.89449 0.98599 0.87061 1.45092 1.08192 1.57839 1.29242 1.16021 0.79947 0.80677 0.83977 1.91028 1.79640 1.46620 1.22600 1.42519 1.05846 1.50790 1.32172 1.17982 0.82239 0.94024 0.93329 1.21693 0.93554 1.04843 1.05857 1.17602 0.92095 0.88629 0.88243 1.19503 0.96055 0.99549 1.33932 0.90174 1.25906 0.96424 0.98444 0.93515 1.69707 1.19481 1.18221 1.35718 0.86219 0.80988 0.78607 0.80004 1.18966 1.20346 1.18897 1.21779 0.99359 1.06598 1.02199 1.21486 0.87837 0.96895 0.97546 1.67157 1.20595 1.23888 1.15122 1.22893 0.93902 0.98499 1.05761 1.20974 0.89248 0.84249 0.74534 1.90721 1.78660 1.21140 1.50327 0.89845 0.92029 0.91919 0.90415 0.89301 0.77144 0.76044 0.84845 0.90912 0.87897 0.85921 0.87043 0.87281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 11.14 59.85 0.67 1.30 16 2 N -0.63 -5.68 3.33 -180.29 -0.60 -6.28 16 3 C 0.10 0.70 7.07 -3.12 -0.02 0.67 16 4 C 0.16 1.65 3.43 -66.30 -0.23 1.42 16 5 H 0.11 1.31 7.72 -51.93 -0.40 0.91 16 6 N -0.75 -8.41 5.19 -57.08 -0.30 -8.71 16 7 C 0.69 12.10 8.51 -86.92 -0.74 11.36 16 8 O -0.53 -11.64 14.38 5.30 0.08 -11.56 16 9 N -0.67 -12.15 5.40 -15.87 -0.09 -12.23 16 10 C 0.35 8.19 7.41 -154.68 -1.15 7.04 16 11 C -0.23 -5.73 8.60 -38.46 -0.33 -6.06 16 12 C 0.14 3.67 5.57 -106.55 -0.59 3.08 16 13 C -0.46 -11.57 9.12 -37.65 -0.34 -11.91 16 14 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 15 C 0.07 1.76 5.41 -17.34 -0.09 1.66 16 16 N -0.80 -19.47 10.69 55.55 0.59 -18.88 16 17 Si 0.92 17.81 29.56 -169.99 -5.02 12.78 16 18 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 19 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 21 C -0.28 -6.63 9.85 -39.07 -0.38 -7.01 16 22 C 0.12 2.74 11.10 -18.05 -0.20 2.54 16 23 N -0.55 -13.67 7.90 -12.76 -0.10 -13.77 16 24 C -0.17 -1.93 6.59 -26.74 -0.18 -2.11 16 25 C 0.52 6.43 8.02 -10.86 -0.09 6.34 16 26 O -0.53 -8.59 17.35 5.55 0.10 -8.50 16 27 H 0.08 0.67 7.53 -51.93 -0.39 0.28 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.41 7.77 -51.93 -0.40 0.01 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.39 3.11 8.38 -40.82 -0.34 2.77 16 33 H 0.40 5.86 8.72 -40.82 -0.36 5.50 16 34 H 0.13 3.25 6.25 -52.49 -0.33 2.92 16 35 H 0.28 6.19 8.29 -40.82 -0.34 5.85 16 36 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 37 H 0.12 2.53 8.06 -52.48 -0.42 2.11 16 38 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 39 H 0.11 1.21 8.08 -51.93 -0.42 0.79 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -33.97 336.21 -8.68 -42.64 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -4.72 Total: 11.12 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: -3.68 Total: 8.33 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.49 Total: -59.88 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.17 Total: -20.06 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.02 Total: 12.78 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.97 -8.68 -42.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871722494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.367 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds