Wall clock time and date at job start Fri Apr 10 2020 14:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46764 * 124.34844 * 2 1 4 4 C 1.54476 * 105.47421 * 197.04337 * 3 2 1 5 5 H 1.08999 * 111.00664 * 92.71654 * 4 3 2 6 6 N 1.46502 * 110.97161 * 216.46596 * 4 3 2 7 7 C 1.34773 * 120.00100 * 198.82677 * 6 4 3 8 8 O 1.21579 * 120.00320 * 0.02562 * 7 6 4 9 9 N 1.34777 * 120.00019 * 179.97438 * 7 6 4 10 10 C 1.39461 * 120.00310 * 175.05981 * 9 7 6 11 11 C 1.38641 * 119.64960 * 174.23946 * 10 9 7 12 12 C 1.40819 * 118.67410 * 180.02562 * 11 10 9 13 13 C 1.41544 * 120.99909 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00027 * 147.42129 * 13 12 11 15 15 C 1.40026 * 119.99965 * 327.42578 * 13 12 11 16 16 N 1.30746 * 120.00086 * 359.80875 * 15 13 12 17 17 Si 1.86798 * 120.00286 * 179.80701 * 15 13 12 18 18 H 1.48505 * 109.46659 * 59.99879 * 17 15 13 19 19 H 1.48496 * 109.47379 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47339 * 300.00558 * 17 15 13 21 21 C 1.41164 * 118.00481 * 359.97438 * 12 11 10 22 22 C 1.36589 * 119.12785 * 359.97438 * 21 12 11 23 23 N 1.32068 * 121.25880 * 0.02562 * 22 21 12 24 24 C 1.54630 * 101.76481 * 334.58555 * 4 3 2 25 25 C 1.34419 * 124.35151 * 180.02562 * 2 1 3 26 26 O 1.21285 * 124.94092 * 359.59854 * 25 2 1 27 27 H 1.08998 * 109.46644 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46724 * 299.99484 * 1 2 3 29 29 H 1.08999 * 109.47032 * 59.99532 * 1 2 3 30 30 H 1.08997 * 110.24647 * 78.03879 * 3 2 1 31 31 H 1.08999 * 110.24627 * 316.04002 * 3 2 1 32 32 H 0.97002 * 119.99493 * 18.83424 * 6 4 3 33 33 H 0.96999 * 119.99780 * 355.06380 * 9 7 6 34 34 H 1.07998 * 120.66606 * 0.02562 * 11 10 9 35 35 H 0.97001 * 120.00384 * 179.97438 * 16 15 13 36 36 H 1.08002 * 120.43592 * 180.27734 * 21 12 11 37 37 H 1.08005 * 119.36904 * 180.02562 * 22 21 12 38 38 H 1.08997 * 110.48815 * 143.47575 * 24 4 3 39 39 H 1.09005 * 110.48388 * 266.12068 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7008 0.7489 -0.4363 5 1 3.8270 0.8452 -1.5147 6 7 4.7419 1.4910 0.2789 7 6 5.9993 1.5239 -0.2051 8 8 6.2696 0.9380 -1.2356 9 7 6.9570 2.2071 0.4527 10 6 8.2784 2.1570 0.0097 11 6 9.2359 2.9550 0.6167 12 6 10.5638 2.8885 0.1527 13 6 11.5807 3.6810 0.7369 14 1 12.5925 3.3070 0.7916 15 6 11.2750 4.9498 1.2441 16 7 10.0510 5.4041 1.1747 17 14 12.6159 5.9936 2.0200 18 1 13.6815 6.2544 1.0190 19 1 12.0381 7.2837 2.4748 20 1 13.1944 5.2725 3.1822 21 6 10.8506 2.0068 -0.9118 22 6 9.8404 1.2588 -1.4461 23 7 8.6055 1.3464 -0.9859 24 6 3.6898 -0.7378 -0.0112 25 6 2.2235 -1.1097 -0.0005 26 8 1.7947 -2.2442 0.0060 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 2.3309 1.6427 1.0004 31 1 1.8982 1.9385 -0.7099 32 1 4.5262 1.9587 1.1009 33 1 6.7271 2.7336 1.2342 34 1 8.9688 3.6146 1.4291 35 1 9.8391 6.2829 1.5263 36 1 11.8566 1.9213 -1.2955 37 1 10.0555 0.5826 -2.2604 38 1 4.2324 -1.3457 -0.7352 39 1 4.1198 -0.8532 0.9838 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871722494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:42 Heat of formation + Delta-G solvation = -35.405628 kcal Electronic energy + Delta-G solvation = -23863.991936 eV Core-core repulsion = 20192.108277 eV Total energy + Delta-G solvation = -3671.883659 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.82942 -41.08773 -39.75736 -37.78432 -36.10557 -35.45290 -35.41718 -32.55655 -32.25056 -30.23180 -28.53724 -27.87134 -27.22439 -24.08552 -23.72274 -22.48907 -21.75776 -20.73058 -19.60275 -19.41601 -18.03765 -17.70394 -17.42649 -16.94358 -16.58816 -16.33373 -16.02246 -15.93056 -15.65256 -14.99938 -14.86467 -14.74018 -14.61753 -14.37045 -14.24813 -14.12442 -13.35683 -13.19821 -13.17428 -12.83145 -12.82090 -12.65225 -12.31234 -12.09922 -11.87551 -11.47300 -11.34053 -11.15577 -11.15398 -10.14657 -9.80395 -9.79232 -9.64027 -8.80281 -8.51703 -6.55428 0.84970 1.04691 1.41382 1.44013 1.49215 1.54559 1.59740 2.01853 2.23976 2.28718 2.88759 3.07439 3.31649 3.50778 3.76425 3.80256 3.98581 4.17849 4.39272 4.44007 4.57249 4.67468 4.71715 4.80269 4.86087 4.88499 4.89767 4.95367 5.14438 5.29569 5.44034 5.45593 5.51855 5.67931 5.87005 5.94957 6.04099 6.30756 6.59552 6.82643 6.88435 6.99452 7.02599 7.62602 7.90439 8.36734 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.029617 B = 0.002750 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.161466 B =10180.729512 C =10858.252148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.617 5.617 3 C 0.108 3.892 4 C 0.162 3.838 5 H 0.096 0.904 6 N -0.716 5.716 7 C 0.694 3.306 8 O -0.576 6.576 9 N -0.658 5.658 10 C 0.351 3.649 11 C -0.249 4.249 12 C 0.113 3.887 13 C -0.488 4.488 14 H 0.081 0.919 15 C 0.036 3.964 16 N -0.825 5.825 17 Si 0.989 3.011 18 H -0.264 1.264 19 H -0.267 1.267 20 H -0.259 1.259 21 C -0.289 4.289 22 C 0.110 3.890 23 N -0.573 5.573 24 C -0.167 4.167 25 C 0.517 3.483 26 O -0.580 6.580 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.416 0.584 33 H 0.422 0.578 34 H 0.131 0.869 35 H 0.289 0.711 36 H 0.115 0.885 37 H 0.147 0.853 38 H 0.088 0.912 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.833 0.934 3.817 16.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.350 5.350 3 C -0.014 4.014 4 C 0.055 3.945 5 H 0.114 0.886 6 N -0.375 5.375 7 C 0.393 3.607 8 O -0.450 6.450 9 N -0.307 5.307 10 C 0.123 3.877 11 C -0.275 4.275 12 C 0.105 3.895 13 C -0.520 4.520 14 H 0.099 0.901 15 C -0.179 4.179 16 N -0.452 5.452 17 Si 0.810 3.190 18 H -0.189 1.189 19 H -0.192 1.192 20 H -0.183 1.183 21 C -0.313 4.313 22 C -0.043 4.043 23 N -0.292 5.292 24 C -0.208 4.208 25 C 0.305 3.695 26 O -0.460 6.460 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.255 0.745 33 H 0.260 0.740 34 H 0.149 0.851 35 H 0.100 0.900 36 H 0.134 0.866 37 H 0.165 0.835 38 H 0.107 0.893 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.817 -0.504 2.559 17.018 hybrid contribution 1.200 1.188 1.176 2.058 sum -15.617 0.684 3.735 16.072 Atomic orbital electron populations 1.21793 0.76177 1.03479 1.03877 1.48265 1.07690 1.06721 1.72370 1.22413 0.87116 0.86835 1.05077 1.21462 0.86629 0.88667 0.97785 0.88575 1.44732 1.06143 1.56972 1.29635 1.16169 0.81193 0.79934 0.83355 1.91002 1.80807 1.48426 1.24798 1.42374 1.04451 1.51171 1.32722 1.18174 0.84024 0.92971 0.92512 1.21663 0.93772 1.05637 1.06386 1.18037 0.93062 0.89402 0.89047 1.19780 0.96166 1.00705 1.35324 0.90069 1.26747 0.98789 0.99015 0.93386 1.69750 1.21041 1.18930 1.35500 0.85132 0.77856 0.77028 0.78957 1.18898 1.19158 1.18347 1.21949 1.00203 1.06827 1.02314 1.21912 0.87564 0.96936 0.97901 1.67297 1.21161 1.24777 1.15996 1.22805 0.93616 0.99053 1.05361 1.21025 0.89712 0.84325 0.74401 1.90693 1.79336 1.23097 1.52923 0.91606 0.89467 0.89784 0.87297 0.86571 0.74541 0.74000 0.85122 0.90018 0.86649 0.83527 0.89298 0.86863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.95 11.14 127.77 1.42 2.38 16 2 N -0.62 -9.70 3.33 -842.91 -2.81 -12.51 16 3 C 0.11 1.11 7.07 86.83 0.61 1.72 16 4 C 0.16 3.02 3.43 46.05 0.16 3.17 16 5 H 0.10 2.19 7.72 -2.39 -0.02 2.17 16 6 N -0.72 -14.63 5.19 -452.78 -2.35 -16.98 16 7 C 0.69 23.64 8.51 179.06 1.52 25.16 16 8 O -0.58 -25.56 14.38 -3.96 -0.06 -25.62 16 9 N -0.66 -23.58 5.40 -322.37 -1.74 -25.32 16 10 C 0.35 16.52 7.41 132.76 0.98 17.50 16 11 C -0.25 -12.38 8.60 23.00 0.20 -12.18 16 12 C 0.11 5.92 5.57 -21.11 -0.12 5.80 16 13 C -0.49 -24.89 9.12 23.52 0.21 -24.67 16 14 H 0.08 3.96 7.85 -2.91 -0.02 3.94 16 15 C 0.04 1.67 5.41 85.29 0.46 2.13 16 16 N -0.83 -39.62 10.69 21.84 0.23 -39.39 16 17 Si 0.99 35.64 29.56 68.60 2.03 37.67 16 18 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 19 H -0.27 -9.06 7.11 99.48 0.71 -8.36 16 20 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 21 C -0.29 -14.13 9.85 22.60 0.22 -13.91 16 22 C 0.11 5.24 11.10 84.27 0.94 6.18 16 23 N -0.57 -28.86 7.90 -194.27 -1.53 -30.39 16 24 C -0.17 -3.77 6.59 30.59 0.20 -3.57 16 25 C 0.52 12.50 8.02 87.90 0.71 13.21 16 26 O -0.58 -19.19 17.35 -3.05 -0.05 -19.24 16 27 H 0.07 0.99 7.53 -2.39 -0.02 0.97 16 28 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.11 0.57 7.77 -2.39 -0.02 0.55 16 31 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.42 5.11 8.38 -92.71 -0.78 4.33 16 33 H 0.42 11.64 8.72 -92.71 -0.81 10.84 16 34 H 0.13 6.44 6.25 -2.91 -0.02 6.42 16 35 H 0.29 12.48 8.29 -92.71 -0.77 11.71 16 36 H 0.12 5.15 8.06 -2.91 -0.02 5.13 16 37 H 0.15 6.05 8.06 -2.91 -0.02 6.02 16 38 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.11 2.43 8.08 -2.38 -0.02 2.42 16 Total: -1.00 -76.37 336.21 0.77 -75.60 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: -0.47 Total: 33.25 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: 7.52 Total: 22.93 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -8.20 Total: -124.59 kcal Atomic # 8 Polarization: -44.75 SS G_CDS: -0.11 Total: -44.86 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 2.03 Total: 37.67 kcal Total: -76.37 0.77 -75.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871722494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.191 kcal (2) G-P(sol) polarization free energy of solvation -76.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds