Wall clock time and date at job start Fri Apr 10 2020 14:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46762 * 124.35178 * 2 1 4 4 C 1.54480 * 105.47451 * 162.98227 * 3 2 1 5 5 H 1.08996 * 110.96940 * 267.29659 * 4 3 2 6 6 N 1.46502 * 110.96771 * 143.53535 * 4 3 2 7 7 C 1.34777 * 119.99877 * 161.16997 * 6 4 3 8 8 O 1.21584 * 119.99899 * 359.97438 * 7 6 4 9 9 N 1.34769 * 120.00034 * 180.02562 * 7 6 4 10 10 C 1.39462 * 120.00435 * 175.12022 * 9 7 6 11 11 C 1.38641 * 119.65384 * 185.01641 * 10 9 7 12 12 C 1.40815 * 118.67516 * 179.71685 * 11 10 9 13 13 C 1.41538 * 120.99922 * 180.27641 * 12 11 10 14 14 H 1.08007 * 120.00263 * 203.99778 * 13 12 11 15 15 C 1.40034 * 120.00173 * 23.99930 * 13 12 11 16 16 N 1.30741 * 119.99659 * 16.79664 * 15 13 12 17 17 Si 1.86798 * 120.00429 * 196.79528 * 15 13 12 18 18 H 1.48495 * 109.47170 * 94.67637 * 17 15 13 19 19 H 1.48492 * 109.47074 * 214.68071 * 17 15 13 20 20 H 1.48507 * 109.47119 * 334.67874 * 17 15 13 21 21 C 1.41166 * 118.00551 * 0.54051 * 12 11 10 22 22 C 1.36589 * 119.12824 * 359.73579 * 21 12 11 23 23 N 1.32072 * 121.25705 * 359.97438 * 22 21 12 24 24 C 1.54628 * 101.76176 * 25.41573 * 4 3 2 25 25 C 1.34415 * 124.34934 * 179.97438 * 2 1 3 26 26 O 1.21288 * 124.94097 * 0.43934 * 25 2 1 27 27 H 1.09007 * 109.47283 * 89.99829 * 1 2 3 28 28 H 1.08996 * 109.47648 * 210.00414 * 1 2 3 29 29 H 1.08999 * 109.47354 * 330.00356 * 1 2 3 30 30 H 1.09002 * 110.24251 * 43.98022 * 3 2 1 31 31 H 1.09004 * 110.32066 * 282.02559 * 3 2 1 32 32 H 0.97000 * 119.99953 * 341.17041 * 6 4 3 33 33 H 0.97008 * 120.00226 * 355.11745 * 9 7 6 34 34 H 1.08002 * 120.65961 * 359.97438 * 11 10 9 35 35 H 0.96994 * 120.00325 * 180.02562 * 16 15 13 36 36 H 1.08000 * 120.44025 * 179.75728 * 21 12 11 37 37 H 1.08001 * 119.37268 * 179.97438 * 22 21 12 38 38 H 1.08999 * 110.48361 * 93.88406 * 24 4 3 39 39 H 1.09008 * 110.48404 * 216.51909 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7010 0.7486 0.4357 5 1 3.8268 0.8447 1.5141 6 7 4.7418 1.4910 -0.2798 7 6 5.9994 1.5237 0.2038 8 8 6.2700 0.9376 1.2341 9 7 6.9568 2.2071 -0.4541 10 6 8.2322 2.3264 0.0973 11 6 9.1807 3.1170 -0.5331 12 6 10.4601 3.2277 0.0448 13 6 11.4638 4.0260 -0.5540 14 1 12.5059 3.8197 -0.3589 15 6 11.1058 5.0834 -1.3994 16 7 9.8832 5.5462 -1.3856 17 14 12.3752 5.8327 -2.5469 18 1 12.2759 5.1903 -3.8820 19 1 12.1238 7.2903 -2.6789 20 1 13.7350 5.6132 -1.9919 21 6 10.7133 2.5141 1.2362 22 6 9.7169 1.7553 1.7812 23 7 8.5261 1.6788 1.2152 24 6 3.6897 -0.7379 0.0101 25 6 2.2234 -1.1097 0.0005 26 8 1.7945 -2.2442 -0.0066 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.8984 1.9383 0.7102 31 1 2.3309 1.6443 -0.9998 32 1 4.5258 1.9589 -1.1015 33 1 6.7588 2.6159 -1.3112 34 1 8.9419 3.6408 -1.4468 35 1 9.6350 6.2783 -1.9714 36 1 11.6820 2.5677 1.7107 37 1 9.9065 1.2074 2.6924 38 1 4.1194 -0.8530 -0.9849 39 1 4.2326 -1.3460 0.7338 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871722496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:45 Heat of formation + Delta-G solvation = -11.603573 kcal Electronic energy + Delta-G solvation = -23863.711687 eV Core-core repulsion = 20192.860163 eV Total energy + Delta-G solvation = -3670.851524 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.81087 -39.67438 -38.10440 -36.71233 -34.63658 -34.16126 -33.78704 -31.44603 -30.52379 -28.58646 -27.72542 -26.46762 -26.01232 -22.74814 -21.95180 -21.25300 -20.35212 -19.75203 -18.23678 -17.74374 -16.94739 -16.78882 -16.04923 -15.58390 -15.27288 -15.03544 -14.53385 -14.26486 -14.22096 -13.94923 -13.83127 -13.52214 -13.46147 -12.86868 -12.72282 -12.65374 -12.61399 -12.44366 -11.89456 -11.47928 -11.41557 -11.26494 -10.92818 -10.33287 -10.20116 -10.15221 -9.81230 -9.66486 -9.38748 -9.07255 -9.00410 -8.01935 -7.75477 -7.06417 -6.85001 -4.64217 2.37236 2.55324 2.66009 2.76394 2.93919 2.99286 3.03026 3.22046 3.72354 3.81842 4.07459 4.24846 4.44347 4.64934 4.69949 4.72912 4.96144 5.06378 5.11653 5.30454 5.38464 5.66971 5.67328 5.76509 5.92044 6.14901 6.46242 6.52321 6.57225 6.76955 6.78060 6.90487 7.07259 7.18328 7.39241 7.44518 7.81983 7.91597 8.05884 8.29753 8.42338 8.69374 8.72270 9.07330 9.69554 10.02617 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.027565 B = 0.002781 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.520732 B =10066.046443 C =10738.860419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.625 5.625 3 C 0.099 3.901 4 C 0.161 3.839 5 H 0.112 0.888 6 N -0.745 5.745 7 C 0.694 3.306 8 O -0.527 6.527 9 N -0.666 5.666 10 C 0.354 3.646 11 C -0.247 4.247 12 C 0.144 3.856 13 C -0.455 4.455 14 H 0.083 0.917 15 C 0.078 3.922 16 N -0.787 5.787 17 Si 0.911 3.089 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.260 1.260 21 C -0.284 4.284 22 C 0.121 3.879 23 N -0.554 5.554 24 C -0.169 4.169 25 C 0.522 3.478 26 O -0.532 6.532 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.394 0.606 33 H 0.404 0.596 34 H 0.127 0.873 35 H 0.281 0.719 36 H 0.102 0.898 37 H 0.122 0.878 38 H 0.109 0.891 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.343 -1.547 -2.995 14.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.361 5.361 3 C -0.025 4.025 4 C 0.054 3.946 5 H 0.130 0.870 6 N -0.404 5.404 7 C 0.393 3.607 8 O -0.397 6.397 9 N -0.313 5.313 10 C 0.129 3.871 11 C -0.273 4.273 12 C 0.136 3.864 13 C -0.486 4.486 14 H 0.101 0.899 15 C -0.141 4.141 16 N -0.413 5.413 17 Si 0.736 3.264 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.184 1.184 21 C -0.308 4.308 22 C -0.033 4.033 23 N -0.273 5.273 24 C -0.211 4.211 25 C 0.309 3.691 26 O -0.408 6.408 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.228 0.772 33 H 0.239 0.761 34 H 0.145 0.855 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.127 0.873 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.252 -3.045 -1.695 15.646 hybrid contribution 0.897 1.603 -1.858 2.613 sum -14.356 -1.442 -3.554 14.859 Atomic orbital electron populations 1.21555 0.77846 1.03252 1.01920 1.48156 1.06563 1.07102 1.74242 1.22305 0.90104 0.87503 1.02596 1.21431 0.85145 0.89398 0.98629 0.87035 1.45102 1.08078 1.57834 1.29385 1.16034 0.79998 0.80630 0.84042 1.91035 1.79766 1.45895 1.23019 1.42519 1.09407 1.55777 1.23626 1.17926 0.83097 0.94147 0.91968 1.21473 0.95012 1.06673 1.04135 1.17556 0.91654 0.88450 0.88736 1.19600 0.94485 1.10988 1.23500 0.89923 1.25957 0.96122 0.95988 0.96014 1.69782 1.19311 1.20740 1.31427 0.86244 0.81497 0.78198 0.80504 1.19250 1.20210 1.18426 1.21665 1.00343 1.08763 1.00032 1.21477 0.88335 0.95984 0.97479 1.67202 1.21536 1.26683 1.11912 1.22898 0.93947 0.98528 1.05707 1.20955 0.89211 0.84232 0.74655 1.90723 1.78691 1.21152 1.50204 0.92565 0.90593 0.90896 0.89290 0.90424 0.77164 0.76124 0.85533 0.90764 0.88026 0.86002 0.87315 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 10.96 59.85 0.66 1.31 16 2 N -0.62 -5.69 3.33 -180.29 -0.60 -6.29 16 3 C 0.10 0.70 7.07 -3.12 -0.02 0.68 16 4 C 0.16 1.65 3.43 -66.30 -0.23 1.43 16 5 H 0.11 1.33 7.73 -51.93 -0.40 0.93 16 6 N -0.75 -8.47 5.19 -57.08 -0.30 -8.77 16 7 C 0.69 12.14 8.52 -86.92 -0.74 11.40 16 8 O -0.53 -11.62 14.34 5.29 0.08 -11.55 16 9 N -0.67 -12.21 5.40 -15.86 -0.09 -12.29 16 10 C 0.35 8.31 7.42 -154.67 -1.15 7.17 16 11 C -0.25 -6.06 8.63 -38.46 -0.33 -6.39 16 12 C 0.14 3.71 5.60 -106.55 -0.60 3.12 16 13 C -0.45 -11.42 9.12 -37.65 -0.34 -11.77 16 14 H 0.08 2.00 7.90 -52.48 -0.41 1.58 16 15 C 0.08 1.84 5.20 -17.34 -0.09 1.75 16 16 N -0.79 -18.79 10.93 55.55 0.61 -18.18 16 17 Si 0.91 17.45 29.59 -169.99 -5.03 12.42 16 18 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 19 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 20 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 21 C -0.28 -6.86 9.85 -39.07 -0.38 -7.25 16 22 C 0.12 2.86 11.10 -18.04 -0.20 2.66 16 23 N -0.55 -13.88 7.86 -12.75 -0.10 -13.98 16 24 C -0.17 -1.92 6.59 -26.75 -0.18 -2.10 16 25 C 0.52 6.43 8.02 -10.87 -0.09 6.34 16 26 O -0.53 -8.60 17.60 5.55 0.10 -8.50 16 27 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 28 H 0.08 0.60 7.93 -51.93 -0.41 0.18 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.42 7.77 -51.93 -0.40 0.02 16 32 H 0.39 3.15 8.38 -40.82 -0.34 2.81 16 33 H 0.40 5.88 8.71 -40.82 -0.36 5.53 16 34 H 0.13 3.06 6.22 -52.49 -0.33 2.74 16 35 H 0.28 6.05 8.29 -40.82 -0.34 5.71 16 36 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 37 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 38 H 0.11 1.18 8.08 -51.93 -0.42 0.76 16 39 H 0.11 1.42 8.14 -51.92 -0.42 1.00 16 LS Contribution 336.76 15.07 5.07 5.07 Total: -1.00 -33.96 336.76 -8.70 -42.66 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -4.75 Total: 11.06 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: -3.69 Total: 8.35 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.48 Total: -59.51 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.17 Total: -20.05 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.96 -8.70 -42.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871722496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.056 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds