Wall clock time and date at job start Fri Apr 10 2020 14:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46762 * 124.35178 * 2 1 4 4 C 1.54480 * 105.47451 * 162.98227 * 3 2 1 5 5 H 1.08996 * 110.96940 * 267.29659 * 4 3 2 6 6 N 1.46502 * 110.96771 * 143.53535 * 4 3 2 7 7 C 1.34777 * 119.99877 * 161.16997 * 6 4 3 8 8 O 1.21584 * 119.99899 * 359.97438 * 7 6 4 9 9 N 1.34769 * 120.00034 * 180.02562 * 7 6 4 10 10 C 1.39462 * 120.00435 * 175.12022 * 9 7 6 11 11 C 1.38641 * 119.65384 * 185.01641 * 10 9 7 12 12 C 1.40815 * 118.67516 * 179.71685 * 11 10 9 13 13 C 1.41538 * 120.99922 * 180.27641 * 12 11 10 14 14 H 1.08007 * 120.00263 * 203.99778 * 13 12 11 15 15 C 1.40034 * 120.00173 * 23.99930 * 13 12 11 16 16 N 1.30741 * 119.99659 * 16.79664 * 15 13 12 17 17 Si 1.86798 * 120.00429 * 196.79528 * 15 13 12 18 18 H 1.48495 * 109.47170 * 94.67637 * 17 15 13 19 19 H 1.48492 * 109.47074 * 214.68071 * 17 15 13 20 20 H 1.48507 * 109.47119 * 334.67874 * 17 15 13 21 21 C 1.41166 * 118.00551 * 0.54051 * 12 11 10 22 22 C 1.36589 * 119.12824 * 359.73579 * 21 12 11 23 23 N 1.32072 * 121.25705 * 359.97438 * 22 21 12 24 24 C 1.54628 * 101.76176 * 25.41573 * 4 3 2 25 25 C 1.34415 * 124.34934 * 179.97438 * 2 1 3 26 26 O 1.21288 * 124.94097 * 0.43934 * 25 2 1 27 27 H 1.09007 * 109.47283 * 89.99829 * 1 2 3 28 28 H 1.08996 * 109.47648 * 210.00414 * 1 2 3 29 29 H 1.08999 * 109.47354 * 330.00356 * 1 2 3 30 30 H 1.09002 * 110.24251 * 43.98022 * 3 2 1 31 31 H 1.09004 * 110.32066 * 282.02559 * 3 2 1 32 32 H 0.97000 * 119.99953 * 341.17041 * 6 4 3 33 33 H 0.97008 * 120.00226 * 355.11745 * 9 7 6 34 34 H 1.08002 * 120.65961 * 359.97438 * 11 10 9 35 35 H 0.96994 * 120.00325 * 180.02562 * 16 15 13 36 36 H 1.08000 * 120.44025 * 179.75728 * 21 12 11 37 37 H 1.08001 * 119.37268 * 179.97438 * 22 21 12 38 38 H 1.08999 * 110.48361 * 93.88406 * 24 4 3 39 39 H 1.09008 * 110.48404 * 216.51909 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7010 0.7486 0.4357 5 1 3.8268 0.8447 1.5141 6 7 4.7418 1.4910 -0.2798 7 6 5.9994 1.5237 0.2038 8 8 6.2700 0.9376 1.2341 9 7 6.9568 2.2071 -0.4541 10 6 8.2322 2.3264 0.0973 11 6 9.1807 3.1170 -0.5331 12 6 10.4601 3.2277 0.0448 13 6 11.4638 4.0260 -0.5540 14 1 12.5059 3.8197 -0.3589 15 6 11.1058 5.0834 -1.3994 16 7 9.8832 5.5462 -1.3856 17 14 12.3752 5.8327 -2.5469 18 1 12.2759 5.1903 -3.8820 19 1 12.1238 7.2903 -2.6789 20 1 13.7350 5.6132 -1.9919 21 6 10.7133 2.5141 1.2362 22 6 9.7169 1.7553 1.7812 23 7 8.5261 1.6788 1.2152 24 6 3.6897 -0.7379 0.0101 25 6 2.2234 -1.1097 0.0005 26 8 1.7945 -2.2442 -0.0066 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.8984 1.9383 0.7102 31 1 2.3309 1.6443 -0.9998 32 1 4.5258 1.9589 -1.1015 33 1 6.7588 2.6159 -1.3112 34 1 8.9419 3.6408 -1.4468 35 1 9.6350 6.2783 -1.9714 36 1 11.6820 2.5677 1.7107 37 1 9.9065 1.2074 2.6924 38 1 4.1194 -0.8530 -0.9849 39 1 4.2326 -1.3460 0.7338 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871722496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:45 Heat of formation + Delta-G solvation = -35.739627 kcal Electronic energy + Delta-G solvation = -23864.758305 eV Core-core repulsion = 20192.860163 eV Total energy + Delta-G solvation = -3671.898142 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.82441 -41.07557 -39.73795 -37.78332 -36.14083 -35.46617 -35.42186 -32.56811 -32.25919 -30.21466 -28.53932 -27.88935 -27.22856 -24.08060 -23.73477 -22.47677 -21.75657 -20.73869 -19.62793 -19.39621 -18.04452 -17.70488 -17.43940 -16.92991 -16.55354 -16.34819 -16.03387 -15.95952 -15.64473 -15.02127 -14.84171 -14.73457 -14.62461 -14.36562 -14.27308 -14.11055 -13.37586 -13.21792 -13.16509 -12.91408 -12.79124 -12.62889 -12.32352 -12.03991 -11.88224 -11.49800 -11.32317 -11.14847 -11.11552 -10.14788 -9.90070 -9.80472 -9.58310 -8.81876 -8.61871 -6.53188 0.87234 1.03107 1.41551 1.43713 1.49536 1.56256 1.59638 2.02255 2.22246 2.28195 2.84600 3.07633 3.31866 3.50254 3.78677 3.82041 3.98896 4.18865 4.39214 4.43254 4.56295 4.66457 4.72224 4.80589 4.86424 4.88850 4.89040 4.97019 5.13104 5.25258 5.44290 5.45800 5.53251 5.68189 5.86250 5.94990 5.99887 6.30294 6.59076 6.82730 6.85158 6.99771 7.02907 7.63802 7.93353 8.28496 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.027565 B = 0.002781 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.520732 B =10066.046443 C =10738.860419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.617 5.617 3 C 0.108 3.892 4 C 0.161 3.839 5 H 0.096 0.904 6 N -0.716 5.716 7 C 0.693 3.307 8 O -0.575 6.575 9 N -0.658 5.658 10 C 0.354 3.646 11 C -0.263 4.263 12 C 0.115 3.885 13 C -0.484 4.484 14 H 0.082 0.918 15 C 0.042 3.958 16 N -0.808 5.808 17 Si 0.986 3.014 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.261 1.261 21 C -0.299 4.299 22 C 0.114 3.886 23 N -0.579 5.579 24 C -0.166 4.166 25 C 0.517 3.483 26 O -0.580 6.580 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.416 0.584 33 H 0.422 0.578 34 H 0.126 0.874 35 H 0.293 0.707 36 H 0.113 0.887 37 H 0.146 0.854 38 H 0.114 0.886 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.487 0.310 -4.510 16.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.350 5.350 3 C -0.015 4.015 4 C 0.054 3.946 5 H 0.114 0.886 6 N -0.375 5.375 7 C 0.393 3.607 8 O -0.448 6.448 9 N -0.307 5.307 10 C 0.127 3.873 11 C -0.289 4.289 12 C 0.107 3.893 13 C -0.515 4.515 14 H 0.100 0.900 15 C -0.176 4.176 16 N -0.433 5.433 17 Si 0.806 3.194 18 H -0.185 1.185 19 H -0.191 1.191 20 H -0.185 1.185 21 C -0.323 4.323 22 C -0.039 4.039 23 N -0.299 5.299 24 C -0.208 4.208 25 C 0.305 3.695 26 O -0.460 6.460 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.254 0.746 33 H 0.259 0.741 34 H 0.143 0.857 35 H 0.104 0.896 36 H 0.131 0.869 37 H 0.163 0.837 38 H 0.132 0.868 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.478 -1.133 -3.256 16.835 hybrid contribution 1.169 1.049 -1.367 2.082 sum -15.310 -0.084 -4.623 15.993 Atomic orbital electron populations 1.21779 0.76152 1.04116 1.03032 1.48272 1.07675 1.06720 1.72354 1.22436 0.87187 0.86802 1.05064 1.21465 0.86633 0.88702 0.97767 0.88635 1.44742 1.06015 1.56984 1.29788 1.16182 0.81240 0.79887 0.83435 1.91009 1.80896 1.47757 1.25187 1.42373 1.08118 1.55942 1.24288 1.18128 0.84688 0.93107 0.91383 1.21454 0.95287 1.07665 1.04448 1.17989 0.92617 0.89197 0.89544 1.19861 0.94442 1.12094 1.25076 0.90000 1.26770 0.98245 0.95811 0.96757 1.69799 1.20792 1.21043 1.31709 0.85132 0.78506 0.77605 0.78138 1.18512 1.19140 1.18471 1.21835 1.01126 1.09241 1.00123 1.21890 0.88054 0.95778 0.98130 1.67339 1.22110 1.27619 1.12827 1.22809 0.93614 0.98989 1.05399 1.21025 0.89712 0.84301 0.74483 1.90694 1.79381 1.23110 1.52796 0.91319 0.92080 0.87728 0.86555 0.87340 0.74576 0.74078 0.85655 0.89623 0.86892 0.83691 0.86765 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 10.96 127.77 1.40 2.39 16 2 N -0.62 -9.73 3.33 -842.91 -2.81 -12.54 16 3 C 0.11 1.12 7.07 86.83 0.61 1.73 16 4 C 0.16 3.03 3.43 46.05 0.16 3.19 16 5 H 0.10 2.20 7.73 -2.39 -0.02 2.18 16 6 N -0.72 -14.74 5.19 -452.77 -2.35 -17.09 16 7 C 0.69 23.71 8.52 179.06 1.53 25.23 16 8 O -0.57 -25.56 14.34 -3.98 -0.06 -25.61 16 9 N -0.66 -23.68 5.40 -322.37 -1.74 -25.42 16 10 C 0.35 16.74 7.42 132.76 0.98 17.72 16 11 C -0.26 -13.06 8.63 23.00 0.20 -12.86 16 12 C 0.11 6.02 5.60 -21.12 -0.12 5.90 16 13 C -0.48 -24.57 9.12 23.52 0.21 -24.36 16 14 H 0.08 4.01 7.90 -2.91 -0.02 3.99 16 15 C 0.04 1.94 5.20 85.29 0.44 2.38 16 16 N -0.81 -38.09 10.93 21.84 0.24 -37.85 16 17 Si 0.99 34.84 29.59 68.60 2.03 36.87 16 18 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 19 H -0.27 -8.94 7.11 99.48 0.71 -8.24 16 20 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 21 C -0.30 -14.74 9.85 22.60 0.22 -14.51 16 22 C 0.11 5.50 11.10 84.27 0.94 6.44 16 23 N -0.58 -29.37 7.86 -194.26 -1.53 -30.90 16 24 C -0.17 -3.73 6.59 30.58 0.20 -3.53 16 25 C 0.52 12.47 8.02 87.90 0.71 13.18 16 26 O -0.58 -19.16 17.60 -3.05 -0.05 -19.21 16 27 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.06 0.89 7.93 -2.39 -0.02 0.87 16 29 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 0.59 7.77 -2.39 -0.02 0.57 16 32 H 0.42 5.19 8.38 -92.71 -0.78 4.41 16 33 H 0.42 11.67 8.71 -92.70 -0.81 10.87 16 34 H 0.13 6.12 6.22 -2.91 -0.02 6.10 16 35 H 0.29 12.22 8.29 -92.71 -0.77 11.45 16 36 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 37 H 0.15 6.05 8.06 -2.91 -0.02 6.03 16 38 H 0.11 2.40 8.08 -2.39 -0.02 2.38 16 39 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -76.37 336.76 0.75 -75.63 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: -0.47 Total: 33.24 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 7.49 Total: 22.90 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -8.19 Total: -123.80 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -0.11 Total: -44.83 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.87 kcal Total: -76.37 0.75 -75.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871722496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.886 kcal (2) G-P(sol) polarization free energy of solvation -76.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds