Wall clock time and date at job start Fri Apr 10 2020 14:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46758 * 124.34798 * 2 1 4 4 C 1.54481 * 105.47418 * 197.03556 * 3 2 1 5 5 C 1.54635 * 101.76070 * 334.58016 * 4 3 2 6 6 H 1.08990 * 110.60029 * 266.06158 * 5 4 3 7 7 N 1.46502 * 110.48375 * 143.47397 * 5 4 3 8 8 C 1.34776 * 119.99865 * 158.76994 * 7 5 4 9 9 O 1.21580 * 119.99899 * 0.02562 * 8 7 5 10 10 N 1.34781 * 120.00117 * 180.02562 * 8 7 5 11 11 C 1.39464 * 119.99885 * 174.98074 * 10 8 7 12 12 C 1.38639 * 119.64578 * 185.35668 * 11 10 8 13 13 C 1.40818 * 118.67671 * 180.24613 * 12 11 10 14 14 C 1.41540 * 121.00373 * 179.73138 * 13 12 11 15 15 H 1.08004 * 119.99901 * 27.98934 * 14 13 12 16 16 C 1.40031 * 120.00039 * 208.26599 * 14 13 12 17 17 N 1.30736 * 120.00300 * 9.51878 * 16 14 13 18 18 Si 1.86803 * 119.99834 * 189.51886 * 16 14 13 19 19 H 1.48496 * 109.47231 * 90.00149 * 18 16 14 20 20 H 1.48497 * 109.46975 * 210.00239 * 18 16 14 21 21 H 1.48503 * 109.47071 * 329.99944 * 18 16 14 22 22 C 1.41172 * 117.99884 * 359.45972 * 13 12 11 23 23 C 1.36589 * 119.13087 * 0.27441 * 22 13 12 24 24 N 1.32067 * 121.25597 * 359.97438 * 23 22 13 25 25 C 1.34417 * 124.34927 * 180.02562 * 2 1 3 26 26 O 1.21281 * 124.94255 * 359.61258 * 25 2 1 27 27 H 1.08999 * 109.46869 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47401 * 300.00632 * 1 2 3 29 29 H 1.09000 * 109.46686 * 60.00775 * 1 2 3 30 30 H 1.09003 * 110.24632 * 316.03177 * 3 2 1 31 31 H 1.08998 * 110.24849 * 78.03067 * 3 2 1 32 32 H 1.09000 * 110.97434 * 216.46445 * 4 3 2 33 33 H 1.08999 * 110.97114 * 92.69664 * 4 3 2 34 34 H 0.97001 * 120.00112 * 338.77305 * 7 5 4 35 35 H 0.96996 * 119.99848 * 354.97634 * 10 8 7 36 36 H 1.08004 * 120.66402 * 359.97438 * 12 11 10 37 37 H 0.96997 * 120.00496 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.43368 * 180.29156 * 22 13 12 39 39 H 1.07998 * 119.37119 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7488 -0.4362 5 6 3.6898 -0.7378 -0.0107 6 1 4.1203 -0.8554 0.9837 7 7 4.4191 -1.5550 -0.9837 8 6 4.9012 -2.7611 -0.6240 9 8 4.7305 -3.1711 0.5078 10 7 5.5726 -3.5127 -1.5189 11 6 6.1615 -4.7122 -1.1198 12 6 6.9436 -5.4239 -2.0165 13 6 7.5241 -6.6351 -1.5936 14 6 8.3266 -7.4041 -2.4700 15 1 8.8732 -6.9204 -3.2661 16 6 8.4072 -8.7928 -2.3086 17 7 7.6046 -9.4017 -1.4753 18 14 9.6614 -9.7752 -3.2839 19 1 10.9288 -9.8618 -2.5149 20 1 9.1368 -11.1426 -3.5292 21 1 9.9157 -9.1021 -4.5830 22 6 7.2865 -7.0565 -0.2673 23 6 6.5061 -6.2848 0.5458 24 7 5.9731 -5.1562 0.1142 25 6 2.2235 -1.1098 -0.0005 26 8 1.7947 -2.2442 0.0057 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.8982 1.9384 -0.7100 31 1 2.3309 1.6428 1.0004 32 1 4.4755 1.3010 0.0960 33 1 3.8265 0.8450 -1.5146 34 1 4.5551 -1.2280 -1.8867 35 1 5.6461 -3.2193 -2.4405 36 1 7.1009 -5.0588 -3.0207 37 1 7.6607 -10.3635 -1.3631 38 1 7.7164 -7.9768 0.0996 39 1 6.3221 -6.6033 1.5612 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871725178.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:49 Heat of formation + Delta-G solvation = -36.268746 kcal Electronic energy + Delta-G solvation = -24038.184980 eV Core-core repulsion = 20366.263893 eV Total energy + Delta-G solvation = -3671.921086 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.91129 -41.00876 -39.66103 -37.56448 -36.34785 -35.64627 -35.32273 -32.58475 -32.46729 -30.26694 -28.16698 -27.90442 -27.21216 -23.94342 -23.61780 -22.83597 -21.88660 -20.55416 -19.70472 -19.51477 -18.07021 -17.70873 -17.52161 -17.03808 -16.58298 -16.28026 -16.16562 -15.95700 -15.52922 -14.99239 -14.77412 -14.76081 -14.70342 -14.23403 -14.16223 -13.80042 -13.43229 -13.15634 -13.12578 -12.88634 -12.85517 -12.79170 -12.08823 -12.00927 -11.83625 -11.59104 -11.41711 -11.29357 -11.16506 -10.01140 -9.93993 -9.72530 -9.61007 -8.84840 -8.60231 -6.58119 0.82680 0.99324 1.23047 1.41662 1.55546 1.58526 1.74722 2.02885 2.21259 2.33290 2.85348 3.14202 3.38919 3.49071 3.76293 3.98059 4.05652 4.12567 4.36419 4.45569 4.63188 4.71047 4.73459 4.83646 4.85214 4.92861 4.99097 5.04301 5.07573 5.25360 5.37465 5.49256 5.56818 5.63210 5.85210 5.96183 6.04272 6.25462 6.54601 6.79466 6.83395 6.97150 7.12620 7.61048 7.90513 8.31091 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.038890 B = 0.002695 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.806339 B =10388.940783 C =10588.178037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.623 5.623 3 C 0.102 3.898 4 C -0.118 4.118 5 C 0.131 3.869 6 H 0.104 0.896 7 N -0.713 5.713 8 C 0.689 3.311 9 O -0.572 6.572 10 N -0.658 5.658 11 C 0.364 3.636 12 C -0.310 4.310 13 C 0.120 3.880 14 C -0.482 4.482 15 H 0.090 0.910 16 C 0.032 3.968 17 N -0.824 5.824 18 Si 0.995 3.005 19 H -0.261 1.261 20 H -0.270 1.270 21 H -0.253 1.253 22 C -0.238 4.238 23 C 0.096 3.904 24 N -0.579 5.579 25 C 0.483 3.517 26 O -0.576 6.576 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.094 0.906 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.416 0.584 35 H 0.423 0.577 36 H 0.127 0.873 37 H 0.291 0.709 38 H 0.117 0.883 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.746 23.240 -3.410 24.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.357 5.357 3 C -0.020 4.020 4 C -0.155 4.155 5 C 0.021 3.979 6 H 0.122 0.878 7 N -0.372 5.372 8 C 0.389 3.611 9 O -0.445 6.445 10 N -0.308 5.308 11 C 0.134 3.866 12 C -0.336 4.336 13 C 0.112 3.888 14 C -0.513 4.513 15 H 0.108 0.892 16 C -0.184 4.184 17 N -0.450 5.450 18 Si 0.815 3.185 19 H -0.185 1.185 20 H -0.195 1.195 21 H -0.176 1.176 22 C -0.262 4.262 23 C -0.054 4.054 24 N -0.299 5.299 25 C 0.269 3.731 26 O -0.455 6.455 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.147 0.853 33 H 0.131 0.869 34 H 0.255 0.745 35 H 0.261 0.739 36 H 0.145 0.855 37 H 0.101 0.899 38 H 0.135 0.865 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.855 22.640 -1.670 24.022 hybrid contribution 0.659 -1.380 -1.335 2.030 sum -7.196 21.260 -3.005 22.645 Atomic orbital electron populations 1.21711 0.77214 1.02627 1.03754 1.48348 1.07365 1.07630 1.72391 1.22446 0.88837 0.86201 1.04483 1.23024 0.98470 0.88954 1.05099 1.21575 0.87682 0.93167 0.95473 0.87842 1.44666 1.59496 1.16898 1.16185 1.16294 0.78759 0.81392 0.84701 1.91005 1.61046 1.71743 1.20740 1.42339 1.55279 1.20023 1.13121 1.18037 0.91873 0.86174 0.90553 1.21386 1.09909 1.02062 1.00211 1.18013 0.88618 0.90375 0.91822 1.19875 1.25457 0.92489 1.13496 0.89241 1.26938 0.96622 0.99159 0.95656 1.69830 1.32198 1.12096 1.30894 0.85010 0.77614 0.76918 0.78987 1.18550 1.19498 1.17640 1.21962 1.06367 1.02728 0.95154 1.21875 0.94383 0.90105 0.99081 1.67315 1.29297 1.17273 1.15991 1.22014 0.91350 0.84525 0.75225 1.90745 1.79385 1.23993 1.51328 0.93120 0.89837 0.89291 0.86468 0.88760 0.85304 0.86902 0.74549 0.73854 0.85522 0.89868 0.86466 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.28 11.14 127.77 1.42 2.71 16 2 N -0.62 -11.13 3.33 -842.90 -2.81 -13.94 16 3 C 0.10 0.69 7.35 86.83 0.64 1.33 16 4 C -0.12 -0.91 6.87 31.65 0.22 -0.69 16 5 C 0.13 3.00 3.23 44.99 0.15 3.15 16 6 H 0.10 2.83 7.66 -2.39 -0.02 2.82 16 7 N -0.71 -18.74 5.16 -457.85 -2.36 -21.10 16 8 C 0.69 27.73 8.48 179.05 1.52 29.25 16 9 O -0.57 -29.75 14.31 -3.97 -0.06 -29.81 16 10 N -0.66 -25.86 5.40 -322.36 -1.74 -27.60 16 11 C 0.36 18.28 7.42 132.76 0.99 19.26 16 12 C -0.31 -15.48 9.74 23.00 0.22 -15.25 16 13 C 0.12 6.64 5.58 -21.11 -0.12 6.52 16 14 C -0.48 -25.42 9.12 23.52 0.21 -25.21 16 15 H 0.09 4.40 7.87 -2.91 -0.02 4.37 16 16 C 0.03 1.59 5.30 85.29 0.45 2.04 16 17 N -0.82 -43.29 10.83 21.84 0.24 -43.05 16 18 Si 0.99 37.15 29.57 68.60 2.03 39.18 16 19 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 20 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 21 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 22 C -0.24 -13.36 8.71 22.60 0.20 -13.16 16 23 C 0.10 5.27 11.10 84.27 0.94 6.21 16 24 N -0.58 -32.52 7.85 -194.27 -1.53 -34.05 16 25 C 0.48 14.15 7.66 87.90 0.67 14.82 16 26 O -0.58 -24.90 17.31 -3.03 -0.05 -24.95 16 27 H 0.05 1.08 7.53 -2.39 -0.02 1.06 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.11 0.41 7.80 -2.39 -0.02 0.39 16 34 H 0.42 7.06 8.40 -92.71 -0.78 6.28 16 35 H 0.42 12.25 8.71 -92.71 -0.81 11.44 16 36 H 0.13 5.49 8.06 -2.91 -0.02 5.47 16 37 H 0.29 13.76 8.29 -92.71 -0.77 12.99 16 38 H 0.12 6.67 6.27 -2.91 -0.02 6.65 16 39 H 0.13 6.72 8.06 -2.91 -0.02 6.70 16 Total: -1.00 -90.58 336.14 0.75 -89.83 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: -0.48 Total: 34.52 kcal Atomic # 6 Polarization: 23.47 SS G_CDS: 7.51 Total: 30.98 kcal Atomic # 7 Polarization: -131.54 SS G_CDS: -8.20 Total: -139.74 kcal Atomic # 8 Polarization: -54.65 SS G_CDS: -0.11 Total: -54.76 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Total: -90.58 0.75 -89.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871725178.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.558 kcal (2) G-P(sol) polarization free energy of solvation -90.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds