Wall clock time and date at job start Fri Apr 10 2020 14:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46767 * 124.35128 * 2 1 4 4 C 1.54483 * 105.47113 * 196.99289 * 3 2 1 5 5 C 1.54626 * 101.76829 * 334.58265 * 4 3 2 6 6 H 1.09000 * 110.59697 * 143.53022 * 5 4 3 7 7 N 1.46496 * 110.48721 * 266.12227 * 5 4 3 8 8 C 1.34775 * 119.99760 * 201.22830 * 7 5 4 9 9 O 1.21585 * 120.00049 * 359.97438 * 8 7 5 10 10 N 1.34780 * 119.99877 * 179.97438 * 8 7 5 11 11 C 1.39463 * 119.99778 * 184.50662 * 10 8 7 12 12 C 1.38639 * 119.64624 * 173.82326 * 11 10 8 13 13 C 1.40819 * 118.67703 * 179.75634 * 12 11 10 14 14 C 1.41537 * 121.00254 * 180.25375 * 13 12 11 15 15 H 1.08001 * 120.00553 * 201.05242 * 14 13 12 16 16 C 1.40034 * 119.99791 * 21.05936 * 14 13 12 17 17 N 1.30741 * 120.00089 * 13.68200 * 16 14 13 18 18 Si 1.86804 * 119.99774 * 193.68163 * 16 14 13 19 19 H 1.48498 * 109.47184 * 90.00034 * 18 16 14 20 20 H 1.48501 * 109.46748 * 209.99793 * 18 16 14 21 21 H 1.48498 * 109.47441 * 329.99598 * 18 16 14 22 22 C 1.41172 * 118.00018 * 0.49950 * 13 12 11 23 23 C 1.36589 * 119.13017 * 359.75838 * 22 13 12 24 24 N 1.32073 * 121.25692 * 359.97438 * 23 22 13 25 25 C 1.34416 * 124.34709 * 179.97438 * 2 1 3 26 26 O 1.21280 * 124.94817 * 359.65310 * 25 2 1 27 27 H 1.08996 * 109.47219 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47012 * 300.00176 * 1 2 3 29 29 H 1.09001 * 109.46879 * 59.99805 * 1 2 3 30 30 H 1.08997 * 110.24347 * 315.99569 * 3 2 1 31 31 H 1.09004 * 110.24285 * 77.90722 * 3 2 1 32 32 H 1.08995 * 110.96639 * 216.46486 * 4 3 2 33 33 H 1.09005 * 110.96415 * 92.70478 * 4 3 2 34 34 H 0.96995 * 120.00324 * 21.22300 * 7 5 4 35 35 H 0.96998 * 119.99669 * 4.77165 * 10 8 7 36 36 H 1.07999 * 120.66302 * 359.97438 * 12 11 10 37 37 H 0.96998 * 120.00033 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.43091 * 179.73006 * 22 13 12 39 39 H 1.07993 * 119.36971 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7012 0.7485 -0.4351 5 6 3.6899 -0.7379 -0.0092 6 1 4.2333 -1.3478 -0.7309 7 7 4.2668 -0.8924 1.3285 8 6 4.7465 -2.0891 1.7214 9 8 4.6999 -3.0405 0.9658 10 7 5.2778 -2.2311 2.9518 11 6 5.8589 -3.4428 3.3248 12 6 6.5163 -3.5423 4.5414 13 6 7.0911 -4.7769 4.8998 14 6 7.7689 -4.9350 6.1323 15 1 8.4801 -5.7379 6.2584 16 6 7.5172 -4.0504 7.1882 17 7 6.4811 -3.2544 7.1414 18 14 8.6618 -4.0078 8.6639 19 1 9.7440 -3.0200 8.4225 20 1 7.8951 -3.6163 9.8739 21 1 9.2562 -5.3532 8.8684 22 6 6.9756 -5.8506 3.9906 23 6 6.3134 -5.6556 2.8120 24 7 5.7814 -4.4850 2.5104 25 6 2.2234 -1.1098 0.0005 26 8 1.7946 -2.2442 0.0070 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8987 1.9381 -0.7104 31 1 2.3291 1.6440 1.0000 32 1 4.4754 1.3009 0.0973 33 1 3.8274 0.8444 -1.5136 34 1 4.3037 -0.1335 1.9314 35 1 5.2525 -1.4918 3.5793 36 1 6.5831 -2.6910 5.2026 37 1 6.3070 -2.6414 7.8727 38 1 7.4057 -6.8134 4.2237 39 1 6.2224 -6.4744 2.1138 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871725179.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:52 Heat of formation + Delta-G solvation = -6.985928 kcal Electronic energy + Delta-G solvation = -24288.288338 eV Core-core repulsion = 20617.637050 eV Total energy + Delta-G solvation = -3670.651288 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.82056 -39.42527 -37.87726 -36.51297 -34.65972 -34.10436 -33.69713 -31.51356 -30.43328 -28.55385 -27.26084 -26.47798 -25.96216 -22.47537 -21.87335 -21.60725 -20.18329 -19.63978 -18.19628 -17.69323 -16.95827 -16.59977 -15.90072 -15.64910 -15.23957 -14.88694 -14.38579 -14.21784 -14.13049 -13.90866 -13.72596 -13.39886 -12.97192 -12.88103 -12.76063 -12.57964 -12.40630 -12.31299 -11.78756 -11.56457 -11.41151 -11.18205 -10.88555 -10.29214 -10.24364 -10.07128 -9.71367 -9.54045 -9.34760 -8.90493 -8.77270 -7.95641 -7.66089 -6.98375 -6.72718 -4.59795 2.31377 2.72980 2.80814 2.84922 3.01800 3.05528 3.22284 3.29208 3.83689 3.85478 4.11265 4.27157 4.50326 4.55781 4.71489 4.75963 5.07416 5.11546 5.16415 5.42351 5.46359 5.52480 5.61428 5.76205 6.00550 6.31309 6.51714 6.59768 6.66501 6.85340 6.92713 6.96727 7.19283 7.26725 7.48340 7.54017 7.90534 8.12789 8.15841 8.39512 8.50622 8.77195 8.78744 9.20732 9.80184 10.08031 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.023424 B = 0.003189 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.071216 B = 8778.368157 C = 9378.375619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.629 5.629 3 C 0.103 3.897 4 C -0.141 4.141 5 C 0.140 3.860 6 H 0.121 0.879 7 N -0.738 5.738 8 C 0.689 3.311 9 O -0.514 6.514 10 N -0.666 5.666 11 C 0.354 3.646 12 C -0.250 4.250 13 C 0.140 3.860 14 C -0.450 4.450 15 H 0.082 0.918 16 C 0.075 3.925 17 N -0.790 5.790 18 Si 0.914 3.086 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.285 4.285 23 C 0.120 3.880 24 N -0.552 5.552 25 C 0.502 3.498 26 O -0.501 6.501 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.394 0.606 35 H 0.404 0.596 36 H 0.137 0.863 37 H 0.280 0.720 38 H 0.101 0.899 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.191 15.487 -8.487 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.367 5.367 3 C -0.020 4.020 4 C -0.179 4.179 5 C 0.030 3.970 6 H 0.139 0.861 7 N -0.398 5.398 8 C 0.388 3.612 9 O -0.382 6.382 10 N -0.314 5.314 11 C 0.128 3.872 12 C -0.276 4.276 13 C 0.132 3.868 14 C -0.481 4.481 15 H 0.100 0.900 16 C -0.143 4.143 17 N -0.416 5.416 18 Si 0.739 3.261 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.185 1.185 22 C -0.309 4.309 23 C -0.033 4.033 24 N -0.272 5.272 25 C 0.286 3.714 26 O -0.372 6.372 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.228 0.772 35 H 0.238 0.762 36 H 0.154 0.846 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.140 14.219 -9.921 18.751 hybrid contribution 0.682 0.872 2.254 2.511 sum -6.458 15.091 -7.667 18.117 Atomic orbital electron populations 1.21528 0.78261 1.03804 1.01165 1.48205 1.06392 1.07361 1.74731 1.22072 0.90463 0.87532 1.01948 1.22932 0.97030 0.94450 1.03482 1.21282 0.91454 0.97437 0.86811 0.86108 1.44956 1.66948 1.11876 1.16047 1.16097 0.79106 0.83007 0.82975 1.91067 1.57926 1.36845 1.52408 1.42502 1.60553 1.14576 1.13726 1.17976 0.93497 0.84758 0.90955 1.21703 1.09073 1.00555 0.96235 1.17573 0.88043 0.89476 0.91705 1.19613 1.21183 1.11797 0.95539 0.90035 1.25979 0.94435 0.93747 1.00138 1.69758 1.22436 1.17563 1.31850 0.86210 0.80464 0.79904 0.79555 1.19226 1.20238 1.18512 1.21645 1.11162 0.99272 0.98863 1.21471 0.94141 0.93171 0.94543 1.67210 1.26595 0.99313 1.34033 1.21510 0.89725 0.84517 0.75667 1.90781 1.78150 1.20984 1.47311 0.89971 0.92239 0.92218 0.90152 0.91053 0.88147 0.88381 0.77187 0.76208 0.84580 0.90850 0.88094 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 11.14 59.85 0.67 1.48 16 2 N -0.63 -6.59 3.33 -180.28 -0.60 -7.19 16 3 C 0.10 0.64 7.35 -3.12 -0.02 0.62 16 4 C -0.14 -0.91 6.77 -25.10 -0.17 -1.08 16 5 C 0.14 1.76 3.23 -67.94 -0.22 1.54 16 6 H 0.12 1.74 7.66 -51.93 -0.40 1.35 16 7 N -0.74 -10.22 5.13 -58.68 -0.30 -10.52 16 8 C 0.69 13.91 8.51 -86.92 -0.74 13.17 16 9 O -0.51 -12.96 14.31 5.29 0.08 -12.88 16 10 N -0.67 -13.59 5.39 -15.86 -0.09 -13.68 16 11 C 0.35 8.93 7.42 -154.68 -1.15 7.78 16 12 C -0.25 -6.45 8.67 -38.46 -0.33 -6.79 16 13 C 0.14 3.76 5.65 -106.55 -0.60 3.16 16 14 C -0.45 -11.67 9.15 -37.65 -0.34 -12.01 16 15 H 0.08 2.02 7.88 -52.49 -0.41 1.61 16 16 C 0.08 1.82 5.29 -17.34 -0.09 1.73 16 17 N -0.79 -19.40 10.58 55.55 0.59 -18.81 16 18 Si 0.91 17.94 29.58 -169.99 -5.03 12.91 16 19 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 20 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 22 C -0.29 -7.22 9.85 -39.06 -0.38 -7.60 16 23 C 0.12 3.03 11.10 -18.04 -0.20 2.83 16 24 N -0.55 -14.88 7.86 -12.76 -0.10 -14.98 16 25 C 0.50 7.57 7.65 -10.86 -0.08 7.48 16 26 O -0.50 -10.40 17.35 5.56 0.10 -10.30 16 27 H 0.08 0.88 7.53 -51.93 -0.39 0.49 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.10 0.47 8.03 -51.93 -0.42 0.05 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.39 3.93 8.59 -40.82 -0.35 3.58 16 35 H 0.40 6.65 8.72 -40.82 -0.36 6.29 16 36 H 0.14 3.46 5.87 -52.49 -0.31 3.15 16 37 H 0.28 6.20 8.29 -40.82 -0.34 5.87 16 38 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 39 H 0.12 2.71 8.06 -52.49 -0.42 2.28 16 LS Contribution 336.02 15.07 5.06 5.06 Total: -1.00 -37.33 336.02 -8.69 -46.03 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -4.73 Total: 12.06 kcal Atomic # 6 Polarization: 15.98 SS G_CDS: -3.67 Total: 12.31 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: -0.50 Total: -65.18 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: 0.17 Total: -23.19 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.33 -8.69 -46.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871725179.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.041 kcal (2) G-P(sol) polarization free energy of solvation -37.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds