Wall clock time and date at job start Fri Apr 10 2020 14:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46767 * 124.35128 * 2 1 4 4 C 1.54483 * 105.47113 * 196.99289 * 3 2 1 5 5 C 1.54626 * 101.76829 * 334.58265 * 4 3 2 6 6 H 1.09000 * 110.59697 * 143.53022 * 5 4 3 7 7 N 1.46496 * 110.48721 * 266.12227 * 5 4 3 8 8 C 1.34775 * 119.99760 * 201.22830 * 7 5 4 9 9 O 1.21585 * 120.00049 * 359.97438 * 8 7 5 10 10 N 1.34780 * 119.99877 * 179.97438 * 8 7 5 11 11 C 1.39463 * 119.99778 * 184.50662 * 10 8 7 12 12 C 1.38639 * 119.64624 * 173.82326 * 11 10 8 13 13 C 1.40819 * 118.67703 * 179.75634 * 12 11 10 14 14 C 1.41537 * 121.00254 * 180.25375 * 13 12 11 15 15 H 1.08001 * 120.00553 * 201.05242 * 14 13 12 16 16 C 1.40034 * 119.99791 * 21.05936 * 14 13 12 17 17 N 1.30741 * 120.00089 * 13.68200 * 16 14 13 18 18 Si 1.86804 * 119.99774 * 193.68163 * 16 14 13 19 19 H 1.48498 * 109.47184 * 90.00034 * 18 16 14 20 20 H 1.48501 * 109.46748 * 209.99793 * 18 16 14 21 21 H 1.48498 * 109.47441 * 329.99598 * 18 16 14 22 22 C 1.41172 * 118.00018 * 0.49950 * 13 12 11 23 23 C 1.36589 * 119.13017 * 359.75838 * 22 13 12 24 24 N 1.32073 * 121.25692 * 359.97438 * 23 22 13 25 25 C 1.34416 * 124.34709 * 179.97438 * 2 1 3 26 26 O 1.21280 * 124.94817 * 359.65310 * 25 2 1 27 27 H 1.08996 * 109.47219 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47012 * 300.00176 * 1 2 3 29 29 H 1.09001 * 109.46879 * 59.99805 * 1 2 3 30 30 H 1.08997 * 110.24347 * 315.99569 * 3 2 1 31 31 H 1.09004 * 110.24285 * 77.90722 * 3 2 1 32 32 H 1.08995 * 110.96639 * 216.46486 * 4 3 2 33 33 H 1.09005 * 110.96415 * 92.70478 * 4 3 2 34 34 H 0.96995 * 120.00324 * 21.22300 * 7 5 4 35 35 H 0.96998 * 119.99669 * 4.77165 * 10 8 7 36 36 H 1.07999 * 120.66302 * 359.97438 * 12 11 10 37 37 H 0.96998 * 120.00033 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.43091 * 179.73006 * 22 13 12 39 39 H 1.07993 * 119.36971 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7012 0.7485 -0.4351 5 6 3.6899 -0.7379 -0.0092 6 1 4.2333 -1.3478 -0.7309 7 7 4.2668 -0.8924 1.3285 8 6 4.7465 -2.0891 1.7214 9 8 4.6999 -3.0405 0.9658 10 7 5.2778 -2.2311 2.9518 11 6 5.8589 -3.4428 3.3248 12 6 6.5163 -3.5423 4.5414 13 6 7.0911 -4.7769 4.8998 14 6 7.7689 -4.9350 6.1323 15 1 8.4801 -5.7379 6.2584 16 6 7.5172 -4.0504 7.1882 17 7 6.4811 -3.2544 7.1414 18 14 8.6618 -4.0078 8.6639 19 1 9.7440 -3.0200 8.4225 20 1 7.8951 -3.6163 9.8739 21 1 9.2562 -5.3532 8.8684 22 6 6.9756 -5.8506 3.9906 23 6 6.3134 -5.6556 2.8120 24 7 5.7814 -4.4850 2.5104 25 6 2.2234 -1.1098 0.0005 26 8 1.7946 -2.2442 0.0070 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8987 1.9381 -0.7104 31 1 2.3291 1.6440 1.0000 32 1 4.4754 1.3009 0.0973 33 1 3.8274 0.8444 -1.5136 34 1 4.3037 -0.1335 1.9314 35 1 5.2525 -1.4918 3.5793 36 1 6.5831 -2.6910 5.2026 37 1 6.3070 -2.6414 7.8727 38 1 7.4057 -6.8134 4.2237 39 1 6.2224 -6.4744 2.1138 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871725179.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:51 Heat of formation + Delta-G solvation = -35.355028 kcal Electronic energy + Delta-G solvation = -24289.518514 eV Core-core repulsion = 20617.637050 eV Total energy + Delta-G solvation = -3671.881465 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.95840 -40.99822 -39.64753 -37.64202 -36.22478 -35.58138 -35.51425 -32.60351 -32.28216 -30.27456 -28.18497 -27.92170 -27.31276 -23.95799 -23.68557 -22.68939 -21.88224 -20.64605 -19.75709 -19.46173 -18.18855 -17.63212 -17.40150 -16.92764 -16.80464 -16.21159 -16.03438 -15.94681 -15.57567 -15.14591 -14.79618 -14.71341 -14.60578 -14.34085 -14.17450 -13.83501 -13.53858 -13.20598 -13.14497 -12.87964 -12.68395 -12.36159 -12.30398 -12.04193 -11.87838 -11.62482 -11.43390 -11.29250 -11.17090 -10.06622 -9.93538 -9.73707 -9.59983 -8.85914 -8.58382 -6.56961 0.83722 1.01832 1.11418 1.42633 1.55831 1.59695 1.84442 2.00708 2.21289 2.28843 2.83785 3.19547 3.37602 3.41235 3.78814 3.88870 4.14415 4.18515 4.35410 4.49225 4.62552 4.71611 4.74568 4.83651 4.85874 4.93204 4.96652 5.05241 5.11220 5.26644 5.36448 5.51058 5.54951 5.65304 5.80863 5.97516 6.03825 6.26608 6.57315 6.80160 6.83568 6.95597 7.09990 7.60172 7.91705 8.27123 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.023424 B = 0.003189 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.071216 B = 8778.368157 C = 9378.375619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.619 5.619 3 C 0.097 3.903 4 C -0.121 4.121 5 C 0.132 3.868 6 H 0.094 0.906 7 N -0.711 5.711 8 C 0.685 3.315 9 O -0.569 6.569 10 N -0.657 5.657 11 C 0.349 3.651 12 C -0.264 4.264 13 C 0.111 3.889 14 C -0.478 4.478 15 H 0.084 0.916 16 C 0.037 3.963 17 N -0.810 5.810 18 Si 0.992 3.008 19 H -0.259 1.259 20 H -0.266 1.266 21 H -0.260 1.260 22 C -0.298 4.298 23 C 0.112 3.888 24 N -0.584 5.584 25 C 0.485 3.515 26 O -0.577 6.577 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.119 0.881 34 H 0.417 0.583 35 H 0.421 0.579 36 H 0.137 0.863 37 H 0.293 0.707 38 H 0.115 0.885 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.912 19.028 -7.574 21.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.354 5.354 3 C -0.024 4.024 4 C -0.158 4.158 5 C 0.022 3.978 6 H 0.112 0.888 7 N -0.372 5.372 8 C 0.385 3.615 9 O -0.442 6.442 10 N -0.307 5.307 11 C 0.122 3.878 12 C -0.290 4.290 13 C 0.103 3.897 14 C -0.508 4.508 15 H 0.102 0.898 16 C -0.180 4.180 17 N -0.436 5.436 18 Si 0.812 3.188 19 H -0.183 1.183 20 H -0.191 1.191 21 H -0.184 1.184 22 C -0.322 4.322 23 C -0.041 4.041 24 N -0.304 5.304 25 C 0.271 3.729 26 O -0.455 6.455 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.111 0.889 32 H 0.148 0.852 33 H 0.138 0.862 34 H 0.255 0.745 35 H 0.259 0.741 36 H 0.155 0.845 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.898 17.916 -9.010 21.207 hybrid contribution 0.496 -0.129 1.953 2.020 sum -6.401 17.787 -7.056 20.178 Atomic orbital electron populations 1.21716 0.77242 1.02654 1.03760 1.48398 1.07373 1.07597 1.72019 1.22501 0.89328 0.86119 1.04430 1.23028 0.98316 0.89335 1.05150 1.21502 0.89555 1.01549 0.85184 0.88808 1.44646 1.65144 1.10333 1.17073 1.16349 0.78823 0.84120 0.82249 1.91030 1.60034 1.39340 1.53773 1.42362 1.60054 1.13777 1.14486 1.18217 0.93128 0.85776 0.90654 1.21699 1.10194 1.00484 0.96647 1.18021 0.88740 0.90299 0.92678 1.19907 1.21725 1.13031 0.96129 0.89802 1.26873 0.95691 0.92692 1.02740 1.69778 1.23185 1.17410 1.33190 0.85047 0.78157 0.79960 0.75600 1.18324 1.19067 1.18416 1.21820 1.11710 0.99784 0.98934 1.21867 0.93693 0.93549 0.95027 1.67322 1.27824 1.00260 1.35044 1.21985 0.91234 0.84476 0.75238 1.90734 1.79490 1.24091 1.51188 0.93085 0.90027 0.89081 0.86472 0.88860 0.85182 0.86244 0.74475 0.74148 0.84508 0.89606 0.86653 0.83970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 11.14 127.77 1.42 2.78 16 2 N -0.62 -11.73 3.33 -842.87 -2.81 -14.54 16 3 C 0.10 0.75 7.35 86.83 0.64 1.39 16 4 C -0.12 -1.09 6.77 31.65 0.21 -0.87 16 5 C 0.13 3.22 3.23 44.99 0.15 3.37 16 6 H 0.09 2.83 7.66 -2.39 -0.02 2.81 16 7 N -0.71 -19.14 5.13 -457.84 -2.35 -21.49 16 8 C 0.69 28.31 8.51 179.05 1.52 29.83 16 9 O -0.57 -30.12 14.31 -3.98 -0.06 -30.17 16 10 N -0.66 -27.27 5.39 -322.36 -1.74 -29.01 16 11 C 0.35 18.14 7.42 132.76 0.98 19.13 16 12 C -0.26 -14.00 8.67 23.00 0.20 -13.80 16 13 C 0.11 6.09 5.65 -21.11 -0.12 5.97 16 14 C -0.48 -24.98 9.15 23.52 0.22 -24.76 16 15 H 0.08 4.20 7.88 -2.91 -0.02 4.18 16 16 C 0.04 1.76 5.29 85.29 0.45 2.21 16 17 N -0.81 -39.34 10.58 21.84 0.23 -39.11 16 18 Si 0.99 35.66 29.58 68.60 2.03 37.69 16 19 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 20 H -0.27 -9.05 7.11 99.48 0.71 -8.34 16 21 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 22 C -0.30 -15.54 9.85 22.60 0.22 -15.32 16 23 C 0.11 5.82 11.10 84.27 0.94 6.75 16 24 N -0.58 -32.68 7.86 -194.27 -1.53 -34.20 16 25 C 0.49 14.85 7.65 87.90 0.67 15.52 16 26 O -0.58 -25.66 17.35 -3.03 -0.05 -25.71 16 27 H 0.05 1.13 7.53 -2.39 -0.02 1.11 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.13 0.50 8.03 -2.39 -0.02 0.48 16 33 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.42 7.28 8.59 -92.71 -0.80 6.48 16 35 H 0.42 13.75 8.72 -92.71 -0.81 12.94 16 36 H 0.14 7.07 5.87 -2.91 -0.02 7.05 16 37 H 0.29 12.58 8.29 -92.71 -0.77 11.81 16 38 H 0.12 5.46 8.06 -2.91 -0.02 5.44 16 39 H 0.14 6.54 8.06 -2.91 -0.02 6.51 16 Total: -1.00 -88.37 336.02 0.74 -87.63 By element: Atomic # 1 Polarization: 37.20 SS G_CDS: -0.49 Total: 36.70 kcal Atomic # 6 Polarization: 24.71 SS G_CDS: 7.51 Total: 32.21 kcal Atomic # 7 Polarization: -130.16 SS G_CDS: -8.19 Total: -138.35 kcal Atomic # 8 Polarization: -55.77 SS G_CDS: -0.11 Total: -55.88 kcal Atomic # 14 Polarization: 35.66 SS G_CDS: 2.03 Total: 37.69 kcal Total: -88.37 0.74 -87.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871725179.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.274 kcal (2) G-P(sol) polarization free energy of solvation -88.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds