Wall clock time and date at job start Fri Apr 10 2020 14:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46772 * 124.34702 * 2 1 4 4 C 1.54479 * 105.47396 * 197.03574 * 3 2 1 5 5 H 1.08995 * 111.00069 * 216.45327 * 4 3 2 6 6 N 1.46498 * 110.96967 * 92.70553 * 4 3 2 7 7 C 1.34774 * 120.00144 * 161.16942 * 6 4 3 8 8 O 1.21574 * 120.00128 * 359.97438 * 7 6 4 9 9 N 1.34775 * 119.99945 * 179.72476 * 7 6 4 10 10 C 1.39242 * 120.00191 * 174.68685 * 9 7 6 11 11 C 1.39680 * 119.57832 * 174.42354 * 10 9 7 12 12 C 1.38651 * 119.49624 * 179.97438 * 11 10 9 13 13 C 1.38352 * 118.67067 * 0.02562 * 12 11 10 14 14 C 1.40580 * 119.13075 * 359.97438 * 13 12 11 15 15 C 1.41336 * 119.78459 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99769 * 0.02562 * 15 14 13 17 17 C 1.40019 * 119.99575 * 179.97438 * 15 14 13 18 18 N 1.30744 * 120.00230 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00056 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46747 * 60.00189 * 19 17 15 21 21 H 1.48495 * 109.47310 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46909 * 300.00436 * 19 17 15 23 23 N 1.31907 * 119.57208 * 354.14468 * 10 9 7 24 24 C 1.54632 * 101.76568 * 334.58621 * 4 3 2 25 25 C 1.34415 * 124.35325 * 180.02562 * 2 1 3 26 26 O 1.21287 * 124.94144 * 359.60226 * 25 2 1 27 27 H 1.08999 * 109.46744 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47348 * 299.99752 * 1 2 3 29 29 H 1.09002 * 109.46906 * 60.00411 * 1 2 3 30 30 H 1.09004 * 110.24089 * 78.04049 * 3 2 1 31 31 H 1.08991 * 110.24538 * 316.03732 * 3 2 1 32 32 H 0.97006 * 119.99802 * 341.16372 * 6 4 3 33 33 H 0.97006 * 120.00062 * 354.67890 * 9 7 6 34 34 H 1.07997 * 120.25565 * 359.97438 * 11 10 9 35 35 H 1.07999 * 120.66172 * 179.97438 * 12 11 10 36 36 H 1.08003 * 120.43792 * 180.02562 * 13 12 11 37 37 H 0.97004 * 119.99964 * 179.97438 * 18 17 15 38 38 H 1.09001 * 110.48989 * 143.47669 * 24 4 3 39 39 H 1.08995 * 110.48772 * 266.12203 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7009 0.7490 -0.4362 5 1 4.4758 1.3010 0.0956 6 7 3.8697 0.8784 -1.8856 7 6 5.1063 0.8968 -2.4211 8 8 6.0819 0.8063 -1.7013 9 7 5.2614 1.0103 -3.7551 10 6 6.5365 1.1406 -4.2992 11 6 6.6974 1.1399 -5.6867 12 6 7.9678 1.2704 -6.2267 13 6 9.0445 1.3975 -5.3672 14 6 8.8173 1.3909 -3.9799 15 6 9.9071 1.5204 -3.0894 16 1 10.9104 1.6243 -3.4753 17 6 9.6858 1.5150 -1.7068 18 7 8.4711 1.3897 -1.2396 19 14 11.1262 1.6854 -0.5296 20 1 11.8177 2.9761 -0.7772 21 1 10.6292 1.6500 0.8692 22 1 12.0769 0.5651 -0.7452 23 7 7.5763 1.2686 -3.4977 24 6 3.6899 -0.7377 -0.0109 25 6 2.2235 -1.1097 -0.0005 26 8 1.7947 -2.2442 0.0059 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.3309 1.6427 1.0005 31 1 1.8982 1.9385 -0.7099 32 1 3.0913 0.9509 -2.4600 33 1 4.4847 1.0011 -4.3362 34 1 5.8389 1.0387 -6.3340 35 1 8.1139 1.2718 -7.2967 36 1 10.0464 1.5012 -5.7570 37 1 8.3179 1.3856 -0.2818 38 1 4.2325 -1.3456 -0.7348 39 1 4.1197 -0.8531 0.9840 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881154404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:50 Heat of formation + Delta-G solvation = 10.292462 kcal Electronic energy + Delta-G solvation = -24751.996790 eV Core-core repulsion = 21082.094749 eV Total energy + Delta-G solvation = -3669.902041 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.68744 -39.32154 -37.75963 -36.52480 -34.35177 -33.81226 -33.00597 -31.26018 -30.26726 -28.85404 -27.63036 -26.48431 -25.47673 -22.72053 -21.48720 -20.99589 -20.07211 -19.55898 -18.11485 -17.31201 -16.87083 -16.60019 -16.01642 -15.54658 -14.86531 -14.70670 -14.46676 -14.31937 -13.85984 -13.69441 -13.57242 -13.22895 -12.92087 -12.77765 -12.70257 -12.47145 -11.99429 -11.95452 -11.73357 -11.55534 -11.13348 -10.95892 -10.65402 -10.45469 -9.98111 -9.94197 -9.68295 -9.21662 -9.02718 -8.95823 -8.63878 -7.95009 -7.24791 -6.94073 -6.11784 -4.38375 2.51131 2.81817 2.84921 3.09281 3.13399 3.17044 3.19473 3.28792 4.07000 4.08042 4.24711 4.42753 4.63866 4.77276 4.95411 5.04182 5.06660 5.19283 5.27387 5.45438 5.48361 5.79731 5.96586 6.05959 6.10184 6.27431 6.47473 6.59054 6.77557 6.84113 6.86323 6.89900 7.22867 7.32076 7.61829 7.71852 7.82346 8.05776 8.16779 8.28723 8.61170 8.79848 9.06592 9.51461 10.26553 10.49803 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.015978 B = 0.004239 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.954734 B = 6603.006946 C = 7898.524117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.628 5.628 3 C 0.097 3.903 4 C 0.163 3.837 5 H 0.119 0.881 6 N -0.752 5.752 7 C 0.668 3.332 8 O -0.461 6.461 9 N -0.672 5.672 10 C 0.387 3.613 11 C -0.357 4.357 12 C -0.036 4.036 13 C -0.306 4.306 14 C 0.272 3.728 15 C -0.426 4.426 16 H 0.081 0.919 17 C 0.058 3.942 18 N -0.652 5.652 19 Si 0.895 3.105 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.267 1.267 23 N -0.472 5.472 24 C -0.168 4.168 25 C 0.519 3.481 26 O -0.537 6.537 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.386 0.614 33 H 0.395 0.605 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.272 0.728 38 H 0.109 0.891 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.044 2.093 3.633 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.364 5.364 3 C -0.027 4.027 4 C 0.056 3.944 5 H 0.137 0.863 6 N -0.412 5.412 7 C 0.366 3.634 8 O -0.325 6.325 9 N -0.321 5.321 10 C 0.147 3.853 11 C -0.383 4.383 12 C -0.060 4.060 13 C -0.329 4.329 14 C 0.147 3.853 15 C -0.456 4.456 16 H 0.100 0.900 17 C -0.171 4.171 18 N -0.271 5.271 19 Si 0.720 3.280 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.192 1.192 23 N -0.190 5.190 24 C -0.209 4.209 25 C 0.308 3.692 26 O -0.413 6.413 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.218 0.782 33 H 0.228 0.772 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.128 0.872 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.632 1.417 5.518 14.774 hybrid contribution -0.234 0.182 -1.085 1.125 sum -13.866 1.599 4.433 14.645 Atomic orbital electron populations 1.21534 0.78262 1.03643 1.01370 1.48201 1.06408 1.07470 1.74309 1.22430 0.90192 0.87379 1.02684 1.21449 0.96197 0.94750 0.82024 0.86341 1.45313 1.07244 1.82226 1.06435 1.16354 0.83512 0.80426 0.83094 1.91367 1.34874 1.48430 1.57788 1.42539 1.07389 1.76316 1.05832 1.18312 0.85372 0.93592 0.88020 1.20437 0.97112 1.27961 0.92836 1.20547 0.92489 0.95764 0.97207 1.21629 0.97381 1.18945 0.94979 1.18363 0.89822 0.87912 0.89191 1.19540 0.93559 1.42057 0.90455 0.90048 1.26158 0.96287 0.95321 0.99330 1.70325 1.19037 1.23631 1.14069 0.86597 0.82355 0.79657 0.79421 1.19242 1.20422 1.19213 1.68638 0.96785 1.19993 1.33613 1.22868 0.93688 0.98915 1.05444 1.21095 0.89615 0.84158 0.74324 1.90708 1.78890 1.21223 1.50517 0.90048 0.92155 0.92149 0.89526 0.89624 0.78159 0.77204 0.89180 0.88632 0.88584 0.91667 0.87245 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 11.14 59.85 0.67 1.38 16 2 N -0.63 -6.21 3.33 -180.29 -0.60 -6.81 16 3 C 0.10 0.77 6.96 -3.12 -0.02 0.75 16 4 C 0.16 1.87 3.43 -66.30 -0.23 1.65 16 5 H 0.12 1.50 7.72 -51.93 -0.40 1.10 16 6 N -0.75 -9.92 5.16 -57.08 -0.29 -10.21 16 7 C 0.67 12.76 8.51 -86.92 -0.74 12.02 16 8 O -0.46 -11.02 12.00 5.30 0.06 -10.96 16 9 N -0.67 -12.83 5.39 -15.79 -0.09 -12.92 16 10 C 0.39 9.29 7.41 -155.00 -1.15 8.14 16 11 C -0.36 -7.95 9.96 -38.89 -0.39 -8.34 16 12 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 13 C -0.31 -7.68 9.83 -38.66 -0.38 -8.06 16 14 C 0.27 7.60 6.55 -84.99 -0.56 7.04 16 15 C -0.43 -11.62 9.14 -37.74 -0.34 -11.97 16 16 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 17 C 0.06 1.52 5.50 -17.35 -0.10 1.42 16 18 N -0.65 -17.66 9.09 55.55 0.51 -17.15 16 19 Si 0.90 19.02 29.56 -169.99 -5.02 14.00 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 N -0.47 -13.05 5.75 -10.26 -0.06 -13.11 16 24 C -0.17 -2.13 6.58 -26.74 -0.18 -2.30 16 25 C 0.52 6.97 8.02 -10.86 -0.09 6.88 16 26 O -0.54 -9.31 17.35 5.55 0.10 -9.21 16 27 H 0.08 0.73 7.53 -51.93 -0.39 0.34 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.56 8.03 -51.93 -0.42 0.14 16 32 H 0.39 4.01 8.59 -40.82 -0.35 3.66 16 33 H 0.39 5.78 8.72 -40.82 -0.36 5.43 16 34 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.10 2.24 8.06 -52.48 -0.42 1.81 16 37 H 0.27 6.87 8.29 -40.82 -0.34 6.53 16 38 H 0.11 1.67 8.09 -51.93 -0.42 1.25 16 39 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -35.19 333.70 -9.11 -44.30 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -4.84 Total: 9.65 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -3.90 Total: 7.40 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.53 Total: -60.21 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.16 Total: -20.17 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.19 -9.11 -44.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881154404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.590 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds