Wall clock time and date at job start Fri Apr 10 2020 14:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46772 * 124.34702 * 2 1 4 4 C 1.54479 * 105.47396 * 197.03574 * 3 2 1 5 5 H 1.08995 * 111.00069 * 216.45327 * 4 3 2 6 6 N 1.46498 * 110.96967 * 92.70553 * 4 3 2 7 7 C 1.34774 * 120.00144 * 161.16942 * 6 4 3 8 8 O 1.21574 * 120.00128 * 359.97438 * 7 6 4 9 9 N 1.34775 * 119.99945 * 179.72476 * 7 6 4 10 10 C 1.39242 * 120.00191 * 174.68685 * 9 7 6 11 11 C 1.39680 * 119.57832 * 174.42354 * 10 9 7 12 12 C 1.38651 * 119.49624 * 179.97438 * 11 10 9 13 13 C 1.38352 * 118.67067 * 0.02562 * 12 11 10 14 14 C 1.40580 * 119.13075 * 359.97438 * 13 12 11 15 15 C 1.41336 * 119.78459 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99769 * 0.02562 * 15 14 13 17 17 C 1.40019 * 119.99575 * 179.97438 * 15 14 13 18 18 N 1.30744 * 120.00230 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00056 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46747 * 60.00189 * 19 17 15 21 21 H 1.48495 * 109.47310 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46909 * 300.00436 * 19 17 15 23 23 N 1.31907 * 119.57208 * 354.14468 * 10 9 7 24 24 C 1.54632 * 101.76568 * 334.58621 * 4 3 2 25 25 C 1.34415 * 124.35325 * 180.02562 * 2 1 3 26 26 O 1.21287 * 124.94144 * 359.60226 * 25 2 1 27 27 H 1.08999 * 109.46744 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47348 * 299.99752 * 1 2 3 29 29 H 1.09002 * 109.46906 * 60.00411 * 1 2 3 30 30 H 1.09004 * 110.24089 * 78.04049 * 3 2 1 31 31 H 1.08991 * 110.24538 * 316.03732 * 3 2 1 32 32 H 0.97006 * 119.99802 * 341.16372 * 6 4 3 33 33 H 0.97006 * 120.00062 * 354.67890 * 9 7 6 34 34 H 1.07997 * 120.25565 * 359.97438 * 11 10 9 35 35 H 1.07999 * 120.66172 * 179.97438 * 12 11 10 36 36 H 1.08003 * 120.43792 * 180.02562 * 13 12 11 37 37 H 0.97004 * 119.99964 * 179.97438 * 18 17 15 38 38 H 1.09001 * 110.48989 * 143.47669 * 24 4 3 39 39 H 1.08995 * 110.48772 * 266.12203 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7009 0.7490 -0.4362 5 1 4.4758 1.3010 0.0956 6 7 3.8697 0.8784 -1.8856 7 6 5.1063 0.8968 -2.4211 8 8 6.0819 0.8063 -1.7013 9 7 5.2614 1.0103 -3.7551 10 6 6.5365 1.1406 -4.2992 11 6 6.6974 1.1399 -5.6867 12 6 7.9678 1.2704 -6.2267 13 6 9.0445 1.3975 -5.3672 14 6 8.8173 1.3909 -3.9799 15 6 9.9071 1.5204 -3.0894 16 1 10.9104 1.6243 -3.4753 17 6 9.6858 1.5150 -1.7068 18 7 8.4711 1.3897 -1.2396 19 14 11.1262 1.6854 -0.5296 20 1 11.8177 2.9761 -0.7772 21 1 10.6292 1.6500 0.8692 22 1 12.0769 0.5651 -0.7452 23 7 7.5763 1.2686 -3.4977 24 6 3.6899 -0.7377 -0.0109 25 6 2.2235 -1.1097 -0.0005 26 8 1.7947 -2.2442 0.0059 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 2.3309 1.6427 1.0005 31 1 1.8982 1.9385 -0.7099 32 1 3.0913 0.9509 -2.4600 33 1 4.4847 1.0011 -4.3362 34 1 5.8389 1.0387 -6.3340 35 1 8.1139 1.2718 -7.2967 36 1 10.0464 1.5012 -5.7570 37 1 8.3179 1.3856 -0.2818 38 1 4.2325 -1.3456 -0.7348 39 1 4.1197 -0.8531 0.9840 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881154404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:49 Heat of formation + Delta-G solvation = -15.004246 kcal Electronic energy + Delta-G solvation = -24753.093737 eV Core-core repulsion = 21082.094749 eV Total energy + Delta-G solvation = -3670.998988 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.74940 -40.83429 -39.43384 -37.69124 -35.91898 -35.11874 -34.80001 -32.43549 -32.11037 -30.59005 -28.52988 -27.53582 -27.12484 -24.22183 -23.19245 -22.38294 -21.45820 -20.62122 -19.76903 -18.82725 -18.20967 -17.57743 -17.48187 -16.60436 -16.37605 -16.23325 -16.10012 -15.63486 -15.54933 -14.86526 -14.68500 -14.60575 -14.55411 -14.10444 -13.72816 -13.56613 -13.33810 -13.16254 -12.88547 -12.83218 -12.69815 -12.53619 -12.42424 -12.27987 -11.75274 -11.48701 -11.05012 -10.86963 -10.80649 -9.95225 -9.83352 -9.75684 -9.10620 -8.74586 -7.99523 -6.37081 1.00311 1.31431 1.43243 1.46483 1.53852 1.57278 1.77346 2.02750 2.30501 2.57204 3.06665 3.31473 3.35334 3.50234 3.82615 4.11322 4.25944 4.38112 4.41172 4.49353 4.62655 4.69700 4.74624 4.82701 4.88786 4.90471 4.94038 4.99782 5.09312 5.33060 5.50088 5.67037 5.70681 5.87827 5.95790 5.99051 6.05618 6.33453 6.45237 6.85536 7.06948 7.11052 7.25579 8.02315 8.40959 8.62064 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.015978 B = 0.004239 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.954734 B = 6603.006946 C = 7898.524117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.617 5.617 3 C 0.108 3.892 4 C 0.161 3.839 5 H 0.108 0.892 6 N -0.729 5.729 7 C 0.663 3.337 8 O -0.511 6.511 9 N -0.662 5.662 10 C 0.366 3.634 11 C -0.348 4.348 12 C -0.034 4.034 13 C -0.333 4.333 14 C 0.238 3.762 15 C -0.468 4.468 16 H 0.083 0.917 17 C 0.014 3.986 18 N -0.683 5.683 19 Si 0.972 3.028 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.265 1.265 23 N -0.504 5.504 24 C -0.165 4.165 25 C 0.515 3.485 26 O -0.585 6.585 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.404 0.596 33 H 0.417 0.583 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.102 0.898 37 H 0.271 0.729 38 H 0.077 0.923 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.953 3.418 3.377 16.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.351 5.351 3 C -0.014 4.014 4 C 0.055 3.945 5 H 0.126 0.874 6 N -0.389 5.389 7 C 0.361 3.639 8 O -0.379 6.379 9 N -0.313 5.313 10 C 0.126 3.874 11 C -0.373 4.373 12 C -0.059 4.059 13 C -0.356 4.356 14 C 0.113 3.887 15 C -0.498 4.498 16 H 0.101 0.899 17 C -0.213 4.213 18 N -0.302 5.302 19 Si 0.793 3.207 20 H -0.185 1.185 21 H -0.196 1.196 22 H -0.190 1.190 23 N -0.223 5.223 24 C -0.207 4.207 25 C 0.304 3.696 26 O -0.466 6.466 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.240 0.760 33 H 0.254 0.746 34 H 0.148 0.852 35 H 0.153 0.847 36 H 0.121 0.879 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.647 2.787 5.227 16.731 hybrid contribution 0.191 -0.229 -1.139 1.178 sum -15.456 2.558 4.088 16.191 Atomic orbital electron populations 1.21763 0.76392 1.03267 1.03799 1.48282 1.07535 1.06910 1.72331 1.22553 0.87178 0.86695 1.04999 1.21563 0.98538 0.93834 0.80611 0.87406 1.45014 1.05852 1.80576 1.07473 1.16604 0.84567 0.79878 0.82805 1.91356 1.37119 1.50548 1.58827 1.42394 1.06643 1.75803 1.06448 1.18805 0.86292 0.93207 0.89047 1.20910 0.98436 1.25315 0.92654 1.21013 0.91874 0.93965 0.99001 1.21805 0.98772 1.20429 0.94566 1.18841 0.90513 0.88639 0.90712 1.19859 0.93823 1.44418 0.91743 0.89866 1.26958 0.99178 0.94612 1.00506 1.70505 1.21000 1.24568 1.14149 0.85436 0.78566 0.79658 0.77040 1.18514 1.19614 1.18994 1.68610 0.97473 1.21029 1.35230 1.22786 0.93506 0.99252 1.05140 1.21100 0.89975 0.84268 0.74253 1.90680 1.79533 1.23206 1.53166 0.91886 0.89637 0.89722 0.86587 0.86775 0.76025 0.74643 0.85202 0.84680 0.87934 0.91808 0.90437 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 11.14 127.77 1.42 2.49 16 2 N -0.62 -10.57 3.33 -842.89 -2.81 -13.38 16 3 C 0.11 1.34 6.96 86.83 0.60 1.95 16 4 C 0.16 3.50 3.43 46.05 0.16 3.66 16 5 H 0.11 2.69 7.72 -2.39 -0.02 2.67 16 6 N -0.73 -18.23 5.16 -452.79 -2.34 -20.57 16 7 C 0.66 25.30 8.51 179.06 1.52 26.82 16 8 O -0.51 -25.22 12.00 -3.95 -0.05 -25.26 16 9 N -0.66 -24.65 5.39 -322.13 -1.74 -26.39 16 10 C 0.37 17.50 7.41 133.26 0.99 18.49 16 11 C -0.35 -14.72 9.96 22.72 0.23 -14.50 16 12 C -0.03 -1.49 10.15 22.40 0.23 -1.27 16 13 C -0.33 -16.87 9.83 22.87 0.22 -16.65 16 14 C 0.24 13.75 6.55 40.19 0.26 14.01 16 15 C -0.47 -26.60 9.14 23.46 0.21 -26.39 16 16 H 0.08 4.45 7.85 -2.91 -0.02 4.43 16 17 C 0.01 0.73 5.50 85.29 0.47 1.19 16 18 N -0.68 -38.48 9.09 21.84 0.20 -38.28 16 19 Si 0.97 40.26 29.56 68.60 2.03 42.29 16 20 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 21 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 22 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 23 N -0.50 -28.64 5.75 -186.36 -1.07 -29.71 16 24 C -0.17 -4.24 6.58 30.59 0.20 -4.04 16 25 C 0.52 13.55 8.02 87.90 0.71 14.25 16 26 O -0.58 -20.66 17.35 -3.05 -0.05 -20.71 16 27 H 0.06 1.04 7.53 -2.39 -0.02 1.02 16 28 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.11 0.90 8.03 -2.39 -0.02 0.88 16 32 H 0.40 7.30 8.59 -92.70 -0.80 6.50 16 33 H 0.42 11.22 8.72 -92.70 -0.81 10.41 16 34 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 35 H 0.14 4.71 8.06 -2.91 -0.02 4.69 16 36 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 37 H 0.27 14.28 8.29 -92.71 -0.77 13.51 16 38 H 0.08 2.51 8.09 -2.39 -0.02 2.49 16 39 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -81.85 333.70 0.90 -80.95 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: -0.50 Total: 31.04 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: 7.23 Total: 20.03 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -7.76 Total: -128.33 kcal Atomic # 8 Polarization: -45.87 SS G_CDS: -0.10 Total: -45.97 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -81.85 0.90 -80.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881154404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.945 kcal (2) G-P(sol) polarization free energy of solvation -81.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds