Wall clock time and date at job start Fri Apr 10 2020 14:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.45473 * 116.18335 * 2 1 4 4 C 1.52764 * 111.40443 * 212.26079 * 3 2 1 5 5 N 1.47550 * 108.49936 * 276.06314 * 4 3 2 6 6 S 1.65595 * 120.93380 * 237.40235 * 5 4 3 7 7 O 1.42093 * 104.27935 * 153.64357 * 6 5 4 8 8 O 1.42105 * 104.27413 * 25.78408 * 6 5 4 9 9 C 1.81401 * 104.44822 * 269.71826 * 6 5 4 10 10 C 1.52997 * 109.47149 * 179.97438 * 9 6 5 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 6 12 12 C 1.50698 * 109.47592 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00057 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00356 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00113 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99923 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47375 * 89.99678 * 16 14 12 18 18 H 1.48508 * 109.47196 * 209.99673 * 16 14 12 19 19 H 1.48504 * 109.47051 * 329.99297 * 16 14 12 20 20 C 1.46431 * 118.13538 * 57.12741 * 5 4 3 21 21 C 1.53245 * 107.49310 * 31.87326 * 20 5 4 22 22 C 1.32675 * 116.17545 * 179.97438 * 2 1 3 23 23 O 1.21275 * 118.10696 * 351.23536 * 22 2 1 24 24 H 1.09000 * 109.47447 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47292 * 300.02218 * 1 2 3 26 26 H 1.09007 * 109.46528 * 60.01905 * 1 2 3 27 27 H 1.09002 * 109.11011 * 332.79393 * 3 2 1 28 28 H 1.08999 * 109.11006 * 91.85016 * 3 2 1 29 29 H 1.09004 * 109.60946 * 156.29292 * 4 3 2 30 30 H 1.09008 * 109.58194 * 35.82014 * 4 3 2 31 31 H 1.09002 * 109.47085 * 299.99812 * 9 6 5 32 32 H 1.09001 * 109.47417 * 59.99938 * 9 6 5 33 33 H 1.09002 * 109.47153 * 299.99990 * 10 9 6 34 34 H 1.08998 * 109.47533 * 59.99620 * 10 9 6 35 35 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 36 36 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 37 37 H 0.97008 * 120.00167 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.85329 * 151.37525 * 20 5 4 39 39 H 1.08999 * 109.85039 * 272.30638 * 20 5 4 40 40 H 1.08994 * 109.38850 * 33.30637 * 21 20 5 41 41 H 1.09007 * 109.38244 * 153.09765 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1069 1.3055 0.0000 4 6 3.4322 1.2751 -0.7592 5 7 4.4851 0.7944 0.1560 6 16 5.8297 1.7110 0.4629 7 8 6.2526 1.2918 1.7530 8 8 5.4041 3.0465 0.2294 9 6 7.0269 1.1947 -0.7985 10 6 8.3274 1.9803 -0.6190 11 6 9.3374 1.5445 -1.6824 12 6 10.6182 2.3187 -1.5061 13 1 10.7036 3.0483 -0.7144 14 6 11.6816 2.0948 -2.3547 15 7 12.7991 2.7708 -2.2011 16 14 11.5343 0.8323 -3.7236 17 1 11.0150 1.4898 -4.9497 18 1 12.8704 0.2475 -4.0035 19 1 10.6005 -0.2442 -3.3058 20 6 4.3047 -0.5131 0.7901 21 6 3.5232 -1.3959 -0.1888 22 6 2.0503 -1.1907 0.0005 23 8 1.3535 -2.1697 0.1640 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5142 0.8897 26 1 -0.3633 0.5136 -0.8902 27 1 1.4424 2.0299 -0.4709 28 1 2.2942 1.6110 1.0294 29 1 3.6777 2.2785 -1.1069 30 1 3.3498 0.6002 -1.6112 31 1 7.2284 0.1287 -0.6934 32 1 6.6180 1.3912 -1.7896 33 1 8.1256 3.0462 -0.7244 34 1 8.7366 1.7843 0.3721 35 1 9.5392 0.4785 -1.5766 36 1 8.9286 1.7403 -2.6737 37 1 13.5474 2.6130 -2.7980 38 1 5.2765 -0.9610 0.9977 39 1 3.7435 -0.4004 1.7177 40 1 3.7968 -1.1331 -1.2106 41 1 3.7676 -2.4424 -0.0065 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594865849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:21 Heat of formation + Delta-G solvation = -97.513908 kcal Electronic energy + Delta-G solvation = -23543.769089 eV Core-core repulsion = 19972.343414 eV Total energy + Delta-G solvation = -3571.425676 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.93501 -37.59358 -37.16022 -35.93869 -35.60584 -34.88019 -32.26464 -31.70749 -29.82767 -28.43827 -26.56530 -25.37318 -23.69949 -22.30691 -20.50041 -19.79420 -19.07296 -17.97407 -17.38027 -16.96037 -16.78734 -16.57173 -16.04242 -15.82675 -15.06504 -14.51989 -14.28743 -14.23820 -13.89835 -13.66196 -13.39025 -12.97153 -12.79104 -12.65946 -12.60404 -12.40826 -12.37391 -12.22811 -12.03811 -11.83550 -11.78982 -11.68769 -11.47715 -11.06117 -10.99635 -10.15665 -10.11191 -9.94356 -9.83658 -9.36692 -9.26940 -9.12835 -8.62864 -6.12348 -4.12050 0.19494 2.23911 2.46830 2.62501 3.23167 3.31183 3.32595 3.80420 4.00262 4.04527 4.15209 4.36471 4.44559 4.61177 4.66546 4.76352 4.82742 4.93278 4.97381 5.05839 5.10206 5.12705 5.21200 5.26352 5.38021 5.51666 5.57381 5.60949 5.68712 5.92984 6.01498 6.13420 6.18952 6.60191 7.06650 7.07984 7.20745 7.66535 7.75739 8.43145 8.91841 9.48554 11.00903 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.025812 B = 0.003280 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.508574 B = 8534.140269 C = 9013.475268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.607 5.607 3 C 0.104 3.896 4 C 0.099 3.901 5 N -1.012 6.012 6 S 2.600 3.400 7 O -0.953 6.953 8 O -0.955 6.955 9 C -0.614 4.614 10 C -0.098 4.098 11 C -0.004 4.004 12 C -0.528 4.528 13 H 0.075 0.925 14 C 0.068 3.932 15 N -0.900 5.900 16 Si 0.880 3.120 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.130 3.870 21 C -0.152 4.152 22 C 0.521 3.479 23 O -0.554 6.554 24 H 0.093 0.907 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.020 0.980 36 H 0.015 0.985 37 H 0.264 0.736 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.125 -5.747 2.086 24.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.339 5.339 3 C -0.020 4.020 4 C -0.027 4.027 5 N -0.849 5.849 6 S 2.697 3.303 7 O -0.943 6.943 8 O -0.945 6.945 9 C -0.746 4.746 10 C -0.137 4.137 11 C -0.042 4.042 12 C -0.566 4.566 13 H 0.093 0.907 14 C -0.134 4.134 15 N -0.538 5.538 16 Si 0.708 3.292 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.191 1.191 20 C 0.005 3.995 21 C -0.193 4.193 22 C 0.309 3.691 23 O -0.432 6.432 24 H 0.112 0.888 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.113 0.887 28 H 0.094 0.906 29 H 0.134 0.866 30 H 0.099 0.901 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.038 0.962 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -24.198 -5.587 2.819 24.994 hybrid contribution 0.249 -0.917 -1.390 1.684 sum -23.949 -6.504 1.429 24.857 Atomic orbital electron populations 1.21907 0.79975 1.04962 1.01448 1.47036 1.08095 1.05867 1.72952 1.21702 0.94567 0.83582 1.02194 1.21908 0.86310 1.02171 0.92284 1.58338 1.35944 1.31627 1.59029 1.05487 0.74242 0.74071 0.76497 1.93588 1.81930 1.82595 1.36191 1.93571 1.80001 1.34094 1.86825 1.30640 1.14398 1.11763 1.17755 1.21324 0.91084 0.98583 1.02758 1.19524 0.94269 0.97064 0.93389 1.21127 0.95997 1.22831 1.16685 0.90726 1.25027 0.95136 0.95815 0.97415 1.69908 1.03869 1.41371 1.38659 0.86775 0.77548 0.82307 0.82607 1.20219 1.21240 1.19063 1.21283 1.01686 0.81490 0.95090 1.22116 0.91225 1.03266 1.02726 1.19868 0.90816 0.82441 0.75953 1.90715 1.64362 1.38401 1.49745 0.88832 0.92150 0.92025 0.88733 0.90598 0.86624 0.90094 0.85348 0.85365 0.90967 0.90955 0.96169 0.96623 0.92579 0.88497 0.90897 0.87521 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 10.17 59.85 0.61 1.01 16 2 N -0.61 -4.86 3.15 -183.48 -0.58 -5.44 16 3 C 0.10 0.67 5.99 -4.72 -0.03 0.64 16 4 C 0.10 0.67 5.77 -3.59 -0.02 0.65 16 5 N -1.01 -9.01 3.15 -113.63 -0.36 -9.37 16 6 S 2.60 32.57 5.43 -107.50 -0.58 31.99 16 7 O -0.95 -14.92 17.16 -57.54 -0.99 -15.90 16 8 O -0.95 -14.21 16.65 -57.54 -0.96 -15.16 16 9 C -0.61 -7.89 6.18 37.16 0.23 -7.66 16 10 C -0.10 -1.80 5.16 -26.74 -0.14 -1.94 16 11 C 0.00 -0.09 4.04 -27.89 -0.11 -0.20 16 12 C -0.53 -14.71 9.66 -34.44 -0.33 -15.04 16 13 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 16 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 20 C 0.13 1.07 5.66 -3.95 -0.02 1.05 16 21 C -0.15 -1.14 5.41 -28.14 -0.15 -1.30 16 22 C 0.52 5.15 6.85 -12.30 -0.08 5.07 16 23 O -0.55 -7.46 15.73 5.56 0.09 -7.37 16 24 H 0.09 0.81 6.44 -51.93 -0.33 0.47 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 27 H 0.09 0.39 7.90 -51.93 -0.41 -0.02 16 28 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 29 H 0.12 0.75 6.95 -51.93 -0.36 0.39 16 30 H 0.08 0.43 6.37 -51.92 -0.33 0.10 16 31 H 0.13 1.41 8.14 -51.92 -0.42 0.98 16 32 H 0.13 1.37 8.14 -51.92 -0.42 0.95 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 36 H 0.02 0.34 7.57 -51.93 -0.39 -0.06 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.10 0.71 7.84 -51.93 -0.41 0.31 16 39 H 0.07 0.64 7.91 -51.93 -0.41 0.22 16 40 H 0.11 0.64 6.49 -51.93 -0.34 0.31 16 41 H 0.11 0.78 8.08 -51.92 -0.42 0.36 16 LS Contribution 339.77 15.07 5.12 5.12 Total: -1.00 -36.91 339.77 -8.62 -45.53 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -6.32 Total: -3.31 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -0.15 Total: -15.87 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: -0.16 Total: -41.34 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -1.86 Total: -38.44 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Atomic # 16 Polarization: 32.57 SS G_CDS: -0.58 Total: 31.99 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.91 -8.62 -45.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594865849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.983 kcal (2) G-P(sol) polarization free energy of solvation -36.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds