Wall clock time and date at job start Fri Apr 10 2020 14:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.45473 * 116.18335 * 2 1 4 4 C 1.52764 * 111.40443 * 212.26079 * 3 2 1 5 5 N 1.47550 * 108.49936 * 276.06314 * 4 3 2 6 6 S 1.65595 * 120.93380 * 237.40235 * 5 4 3 7 7 O 1.42093 * 104.27935 * 153.64357 * 6 5 4 8 8 O 1.42105 * 104.27413 * 25.78408 * 6 5 4 9 9 C 1.81401 * 104.44822 * 269.71826 * 6 5 4 10 10 C 1.52997 * 109.47149 * 179.97438 * 9 6 5 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 6 12 12 C 1.50698 * 109.47592 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00057 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00356 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00113 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99923 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47375 * 89.99678 * 16 14 12 18 18 H 1.48508 * 109.47196 * 209.99673 * 16 14 12 19 19 H 1.48504 * 109.47051 * 329.99297 * 16 14 12 20 20 C 1.46431 * 118.13538 * 57.12741 * 5 4 3 21 21 C 1.53245 * 107.49310 * 31.87326 * 20 5 4 22 22 C 1.32675 * 116.17545 * 179.97438 * 2 1 3 23 23 O 1.21275 * 118.10696 * 351.23536 * 22 2 1 24 24 H 1.09000 * 109.47447 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47292 * 300.02218 * 1 2 3 26 26 H 1.09007 * 109.46528 * 60.01905 * 1 2 3 27 27 H 1.09002 * 109.11011 * 332.79393 * 3 2 1 28 28 H 1.08999 * 109.11006 * 91.85016 * 3 2 1 29 29 H 1.09004 * 109.60946 * 156.29292 * 4 3 2 30 30 H 1.09008 * 109.58194 * 35.82014 * 4 3 2 31 31 H 1.09002 * 109.47085 * 299.99812 * 9 6 5 32 32 H 1.09001 * 109.47417 * 59.99938 * 9 6 5 33 33 H 1.09002 * 109.47153 * 299.99990 * 10 9 6 34 34 H 1.08998 * 109.47533 * 59.99620 * 10 9 6 35 35 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 36 36 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 37 37 H 0.97008 * 120.00167 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.85329 * 151.37525 * 20 5 4 39 39 H 1.08999 * 109.85039 * 272.30638 * 20 5 4 40 40 H 1.08994 * 109.38850 * 33.30637 * 21 20 5 41 41 H 1.09007 * 109.38244 * 153.09765 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1069 1.3055 0.0000 4 6 3.4322 1.2751 -0.7592 5 7 4.4851 0.7944 0.1560 6 16 5.8297 1.7110 0.4629 7 8 6.2526 1.2918 1.7530 8 8 5.4041 3.0465 0.2294 9 6 7.0269 1.1947 -0.7985 10 6 8.3274 1.9803 -0.6190 11 6 9.3374 1.5445 -1.6824 12 6 10.6182 2.3187 -1.5061 13 1 10.7036 3.0483 -0.7144 14 6 11.6816 2.0948 -2.3547 15 7 12.7991 2.7708 -2.2011 16 14 11.5343 0.8323 -3.7236 17 1 11.0150 1.4898 -4.9497 18 1 12.8704 0.2475 -4.0035 19 1 10.6005 -0.2442 -3.3058 20 6 4.3047 -0.5131 0.7901 21 6 3.5232 -1.3959 -0.1888 22 6 2.0503 -1.1907 0.0005 23 8 1.3535 -2.1697 0.1640 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5142 0.8897 26 1 -0.3633 0.5136 -0.8902 27 1 1.4424 2.0299 -0.4709 28 1 2.2942 1.6110 1.0294 29 1 3.6777 2.2785 -1.1069 30 1 3.3498 0.6002 -1.6112 31 1 7.2284 0.1287 -0.6934 32 1 6.6180 1.3912 -1.7896 33 1 8.1256 3.0462 -0.7244 34 1 8.7366 1.7843 0.3721 35 1 9.5392 0.4785 -1.5766 36 1 8.9286 1.7403 -2.6737 37 1 13.5474 2.6130 -2.7980 38 1 5.2765 -0.9610 0.9977 39 1 3.7435 -0.4004 1.7177 40 1 3.7968 -1.1331 -1.2106 41 1 3.7676 -2.4424 -0.0065 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594865849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:21 Heat of formation + Delta-G solvation = -126.177752 kcal Electronic energy + Delta-G solvation = -23545.012047 eV Core-core repulsion = 19972.343414 eV Total energy + Delta-G solvation = -3572.668633 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.60524 -38.32866 -38.22945 -37.03118 -36.48092 -36.26130 -34.23308 -32.34914 -30.44380 -30.10566 -27.17128 -25.95995 -25.36530 -23.05514 -22.08549 -20.44682 -19.94064 -18.97722 -18.84196 -18.06409 -17.47852 -17.34844 -17.08323 -16.81269 -16.23707 -15.90906 -15.57021 -14.97574 -14.85834 -14.50781 -14.30900 -14.19404 -14.01232 -13.63743 -13.39719 -13.35368 -13.20714 -13.19637 -13.13549 -13.12198 -12.68166 -12.60880 -12.53193 -12.42792 -12.24917 -11.83381 -11.62501 -11.39499 -11.26130 -10.85869 -10.76586 -10.10903 -9.76561 -8.29020 -6.35014 -0.79753 1.37962 1.40745 1.51856 1.52141 1.64076 2.04826 2.37316 2.82553 3.06451 3.11362 3.43300 3.48554 3.78139 3.84731 3.95991 4.11624 4.16354 4.25022 4.29708 4.36458 4.51585 4.60482 4.62593 4.64064 4.71740 4.84511 4.88510 4.96565 4.98370 5.03390 5.06330 5.36400 5.37488 5.41902 5.48724 5.64071 6.26227 6.45082 6.73863 7.07599 7.29866 8.88021 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.025812 B = 0.003280 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.508574 B = 8534.140269 C = 9013.475268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.604 5.604 3 C 0.101 3.899 4 C 0.091 3.909 5 N -1.002 6.002 6 S 2.621 3.379 7 O -0.989 6.989 8 O -0.981 6.981 9 C -0.609 4.609 10 C -0.105 4.105 11 C -0.005 4.005 12 C -0.544 4.544 13 H 0.029 0.971 14 C 0.000 4.000 15 N -0.954 5.954 16 Si 0.956 3.044 17 H -0.264 1.264 18 H -0.288 1.288 19 H -0.237 1.237 20 C 0.127 3.873 21 C -0.144 4.144 22 C 0.513 3.487 23 O -0.598 6.598 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.124 0.876 28 H 0.067 0.933 29 H 0.123 0.877 30 H 0.105 0.895 31 H 0.154 0.846 32 H 0.159 0.841 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.032 0.968 36 H 0.032 0.968 37 H 0.266 0.734 38 H 0.108 0.892 39 H 0.064 0.936 40 H 0.129 0.871 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.065 -7.172 0.103 27.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.335 5.335 3 C -0.023 4.023 4 C -0.034 4.034 5 N -0.841 5.841 6 S 2.718 3.282 7 O -0.979 6.979 8 O -0.971 6.971 9 C -0.740 4.740 10 C -0.144 4.144 11 C -0.043 4.043 12 C -0.582 4.582 13 H 0.047 0.953 14 C -0.197 4.197 15 N -0.594 5.594 16 Si 0.778 3.222 17 H -0.189 1.189 18 H -0.214 1.214 19 H -0.160 1.160 20 C 0.002 3.998 21 C -0.185 4.185 22 C 0.303 3.697 23 O -0.481 6.481 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.142 0.858 28 H 0.085 0.915 29 H 0.141 0.859 30 H 0.123 0.877 31 H 0.173 0.827 32 H 0.177 0.823 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.126 0.874 39 H 0.082 0.918 40 H 0.147 0.853 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -26.156 -6.971 0.852 27.083 hybrid contribution 0.809 -0.370 -0.686 1.124 sum -25.347 -7.340 0.166 26.389 Atomic orbital electron populations 1.21984 0.79412 1.04015 1.03108 1.47159 1.08705 1.05984 1.71678 1.21841 0.95105 0.83230 1.02076 1.22206 0.85447 1.03208 0.92503 1.58004 1.35048 1.31607 1.59448 1.04604 0.74458 0.73507 0.75602 1.93542 1.82919 1.83056 1.38394 1.93533 1.80575 1.36002 1.86990 1.30553 1.11423 1.12399 1.19592 1.21178 0.93142 0.99151 1.00938 1.19503 0.92640 0.96703 0.95502 1.21586 0.98862 1.22461 1.15315 0.95271 1.26131 0.94488 0.98402 1.00679 1.70089 1.05111 1.43814 1.40411 0.85586 0.78084 0.79764 0.78769 1.18886 1.21394 1.15970 1.21393 1.02330 0.81137 0.94988 1.22098 0.89325 1.03434 1.03638 1.20321 0.91642 0.82381 0.75392 1.90702 1.65470 1.39882 1.52015 0.91049 0.91179 0.89647 0.85834 0.91518 0.85915 0.87697 0.82749 0.82324 0.91822 0.92145 0.94986 0.94930 0.92475 0.87399 0.91763 0.85297 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 10.17 127.77 1.30 1.97 16 2 N -0.60 -8.31 3.15 -853.96 -2.69 -11.00 16 3 C 0.10 1.00 5.99 86.49 0.52 1.52 16 4 C 0.09 0.91 5.77 86.10 0.50 1.41 16 5 N -1.00 -14.93 3.15 -513.40 -1.62 -16.55 16 6 S 2.62 60.57 5.43 -56.49 -0.31 60.26 16 7 O -0.99 -30.10 17.16 -127.65 -2.19 -32.29 16 8 O -0.98 -27.71 16.65 -127.65 -2.13 -29.84 16 9 C -0.61 -13.61 6.18 71.98 0.44 -13.17 16 10 C -0.10 -3.73 5.16 30.59 0.16 -3.57 16 11 C 0.00 -0.21 4.04 29.84 0.12 -0.09 16 12 C -0.54 -30.82 9.66 25.60 0.25 -30.58 16 13 H 0.03 1.84 7.99 -2.91 -0.02 1.81 16 14 C 0.00 -0.03 5.47 84.65 0.46 0.44 16 15 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 16 Si 0.96 42.16 27.47 68.60 1.88 44.05 16 17 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.24 -9.26 6.54 99.48 0.65 -8.61 16 20 C 0.13 1.77 5.66 86.47 0.49 2.26 16 21 C -0.14 -1.76 5.41 29.68 0.16 -1.60 16 22 C 0.51 9.26 6.85 87.73 0.60 9.86 16 23 O -0.60 -15.81 15.73 -3.02 -0.05 -15.86 16 24 H 0.07 1.20 6.44 -2.39 -0.02 1.18 16 25 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.12 0.55 7.90 -2.39 -0.02 0.53 16 28 H 0.07 0.83 8.06 -2.39 -0.02 0.81 16 29 H 0.12 1.14 6.95 -2.39 -0.02 1.12 16 30 H 0.11 0.61 6.37 -2.38 -0.02 0.59 16 31 H 0.15 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.16 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16 36 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 37 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 38 H 0.11 1.30 7.84 -2.39 -0.02 1.28 16 39 H 0.06 1.03 7.91 -2.39 -0.02 1.01 16 40 H 0.13 1.00 6.49 -2.39 -0.02 0.98 16 41 H 0.12 1.35 8.08 -2.38 -0.02 1.33 16 Total: -1.00 -83.24 339.77 -0.83 -84.07 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.96 Total: 7.95 kcal Atomic # 6 Polarization: -36.54 SS G_CDS: 5.00 Total: -31.54 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -4.01 Total: -86.80 kcal Atomic # 8 Polarization: -73.63 SS G_CDS: -4.36 Total: -77.99 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.88 Total: 44.05 kcal Atomic # 16 Polarization: 60.57 SS G_CDS: -0.31 Total: 60.26 kcal Total: -83.24 -0.83 -84.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594865849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.107 kcal (2) G-P(sol) polarization free energy of solvation -83.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds