Wall clock time and date at job start Fri Apr 10 2020 14:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 120.00127 * 2 1 4 4 C 1.50695 * 109.47414 * 270.00134 * 3 2 1 5 5 C 1.34519 * 125.78700 * 89.71488 * 4 3 2 6 6 C 1.41380 * 106.83747 * 179.89292 * 5 4 3 7 7 C 1.34509 * 106.84482 * 0.37152 * 6 5 4 8 8 O 1.34303 * 125.79098 * 270.02800 * 4 3 2 9 9 C 1.34782 * 120.00178 * 180.02562 * 2 1 3 10 10 O 1.21273 * 120.00275 * 179.97438 * 9 2 1 11 11 C 1.50707 * 119.99529 * 359.97438 * 9 2 1 12 12 N 1.46502 * 109.46638 * 179.97438 * 11 9 2 13 13 C 1.35322 * 125.86299 * 124.71600 * 12 11 9 14 14 C 1.35351 * 106.16806 * 180.26356 * 13 12 11 15 15 C 1.50701 * 126.74701 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47032 * 124.95278 * 15 14 13 17 17 H 1.07997 * 119.99898 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99866 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00263 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99629 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47177 * 59.99668 * 20 18 16 22 22 H 1.48500 * 109.46746 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47243 * 299.99705 * 20 18 16 24 24 N 1.33769 * 106.50107 * 0.02562 * 14 13 12 25 25 N 1.28629 * 108.88659 * 359.97438 * 24 14 13 26 26 H 1.09002 * 109.47007 * 269.99361 * 1 2 3 27 27 H 1.08996 * 109.47086 * 29.99808 * 1 2 3 28 28 H 1.09002 * 109.47297 * 150.00297 * 1 2 3 29 29 H 1.08997 * 109.47012 * 30.00461 * 3 2 1 30 30 H 1.08997 * 109.47346 * 149.99819 * 3 2 1 31 31 H 1.07998 * 126.57901 * 0.02562 * 5 4 3 32 32 H 1.08003 * 126.57740 * 180.16329 * 6 5 4 33 33 H 1.08005 * 125.79329 * 179.75112 * 7 6 5 34 34 H 1.08994 * 109.47538 * 59.99854 * 11 9 2 35 35 H 1.09002 * 109.47049 * 299.99535 * 11 9 2 36 36 H 1.07991 * 126.91601 * 0.22443 * 13 12 11 37 37 H 1.09002 * 109.47126 * 244.94987 * 15 14 13 38 38 H 1.08999 * 109.47479 * 4.95070 * 15 14 13 39 39 H 0.96998 * 120.00468 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 6 1.6322 2.4721 -2.1642 6 6 2.2550 2.6325 -3.4232 7 6 3.4107 1.9459 -3.3768 8 8 3.5228 1.3854 -2.1615 9 6 2.1389 -1.1672 -0.0005 10 8 3.3517 -1.1672 -0.0010 11 6 1.3853 -2.4723 -0.0005 12 7 2.3374 -3.5858 -0.0018 13 6 2.3786 -4.5947 0.8992 14 6 3.4076 -5.3911 0.5265 15 6 3.8648 -6.6532 1.2114 16 6 3.8814 -7.7861 0.2179 17 1 3.5895 -7.6100 -0.8069 18 6 4.2680 -9.0478 0.6175 19 7 4.6229 -9.2625 1.8654 20 14 4.2878 -10.4524 -0.6140 21 1 5.2202 -10.1256 -1.7227 22 1 4.7385 -11.6960 0.0609 23 1 2.9211 -10.6519 -1.1593 24 7 3.9389 -4.8375 -0.5693 25 7 3.2821 -3.7695 -0.8565 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6085 2.0283 0.5139 30 1 3.1499 1.1384 0.5138 31 1 0.6842 2.8884 -1.8573 32 1 1.8740 3.1953 -4.2626 33 1 4.1269 1.8597 -4.1806 34 1 0.7583 -2.5299 -0.8902 35 1 0.7591 -2.5303 0.8897 36 1 1.7229 -4.7356 1.7456 37 1 4.8680 -6.5064 1.6118 38 1 3.1805 -6.8934 2.0251 39 1 4.8953 -10.1500 2.1464 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603175306.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:17 Heat of formation + Delta-G solvation = 95.875088 kcal Electronic energy + Delta-G solvation = -23845.873298 eV Core-core repulsion = 20179.682398 eV Total energy + Delta-G solvation = -3666.190900 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.80444 -42.48854 -40.06574 -36.18832 -34.46128 -33.26591 -33.08128 -31.46886 -30.96713 -28.73093 -27.62455 -27.25156 -25.66810 -23.36209 -22.00901 -21.83130 -20.94044 -20.47007 -19.37118 -17.84691 -17.60253 -17.16334 -16.51030 -16.17777 -16.03862 -15.60166 -15.17497 -14.73489 -14.44880 -14.01326 -13.77732 -13.65504 -13.38130 -13.07804 -13.03536 -12.88082 -12.78254 -12.43047 -12.08167 -12.01385 -11.63257 -10.94971 -10.67358 -10.59445 -10.37221 -10.18008 -10.03980 -9.63825 -9.39269 -9.30504 -9.22735 -8.78545 -8.37821 -8.06222 -5.94162 -3.94508 1.33178 2.08242 2.19163 2.33611 2.55373 2.80648 2.95757 3.41834 3.44690 3.48414 3.60371 3.94775 4.35521 4.44011 4.51743 4.55654 4.62502 4.72125 4.72610 4.85557 4.89876 5.14222 5.15192 5.21389 5.42481 5.50551 5.57327 5.80624 5.87903 5.89045 6.14018 6.20176 6.33640 6.72954 6.93115 7.16077 7.20055 7.58541 7.68801 7.77264 8.03638 8.42794 9.08673 9.39422 9.67903 11.17004 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.028488 B = 0.002679 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.631300 B =10448.655321 C =10926.463612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.617 5.617 3 C 0.196 3.804 4 C -0.033 4.033 5 C -0.199 4.199 6 C -0.223 4.223 7 C -0.030 4.030 8 O -0.160 6.160 9 C 0.501 3.499 10 O -0.487 6.487 11 C 0.108 3.892 12 N -0.301 5.301 13 C -0.086 4.086 14 C 0.038 3.962 15 C 0.092 3.908 16 C -0.503 4.503 17 H 0.059 0.941 18 C 0.056 3.944 19 N -0.899 5.899 20 Si 0.897 3.103 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.278 1.278 24 N -0.259 5.259 25 N -0.081 5.081 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.103 0.897 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.202 0.798 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.182 0.818 37 H 0.040 0.960 38 H 0.036 0.964 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.070 26.579 -3.224 30.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.354 5.354 3 C 0.074 3.926 4 C -0.085 4.085 5 C -0.220 4.220 6 C -0.242 4.242 7 C -0.099 4.099 8 O -0.055 6.055 9 C 0.286 3.714 10 O -0.358 6.358 11 C -0.018 4.018 12 N -0.097 5.097 13 C -0.233 4.233 14 C -0.098 4.098 15 C 0.054 3.946 16 C -0.542 4.542 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.539 5.539 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.204 1.204 24 N -0.127 5.127 25 N -0.059 5.059 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.131 0.869 30 H 0.121 0.879 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.219 0.781 34 H 0.138 0.862 35 H 0.148 0.852 36 H 0.200 0.800 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.404 26.766 -4.231 29.802 hybrid contribution -1.006 -0.819 0.034 1.298 sum -13.410 25.948 -4.197 29.508 Atomic orbital electron populations 1.21947 0.78688 1.04011 1.02478 1.47874 1.07224 1.05056 1.75204 1.19766 0.99440 0.85288 0.88154 1.22869 0.87939 1.01751 0.95922 1.21588 1.01643 1.04227 0.94500 1.21820 0.96943 1.06009 0.99402 1.24178 1.00418 0.98362 0.86920 1.84169 1.40034 1.58759 1.22496 1.20588 0.88568 0.85061 0.77156 1.90874 1.13145 1.86294 1.45463 1.21630 0.90384 0.83047 1.06739 1.46610 1.24027 1.18255 1.20791 1.23308 1.06563 0.92889 1.00558 1.23011 0.93628 0.99224 0.93954 1.17727 0.97204 0.85045 0.94649 1.21017 1.44469 0.92644 0.96022 0.92318 1.24970 0.95374 0.98759 0.95312 1.69933 1.45689 1.22364 1.15887 0.86575 0.78443 0.81158 0.81371 1.20093 1.21348 1.20361 1.75106 1.21444 1.01809 1.14381 1.78319 0.98381 1.14432 1.14802 0.91586 0.90422 0.90650 0.86916 0.87913 0.83572 0.83469 0.78132 0.86158 0.85200 0.80047 0.94245 0.94538 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.26 10.24 59.85 0.61 0.87 16 2 N -0.62 -5.12 2.86 -182.96 -0.52 -5.64 16 3 C 0.20 1.59 5.93 -5.20 -0.03 1.56 16 4 C -0.03 -0.33 6.90 -35.63 -0.25 -0.58 16 5 C -0.20 -1.66 10.81 -39.70 -0.43 -2.09 16 6 C -0.22 -1.92 10.91 -39.71 -0.43 -2.35 16 7 C -0.03 -0.29 12.09 29.41 0.36 0.06 16 8 O -0.16 -2.07 10.65 5.70 0.06 -2.01 16 9 C 0.50 6.34 7.69 -10.98 -0.08 6.25 16 10 O -0.49 -8.92 15.25 5.56 0.08 -8.84 16 11 C 0.11 1.19 5.49 -5.19 -0.03 1.16 16 12 N -0.30 -5.36 3.20 -62.44 -0.20 -5.56 16 13 C -0.09 -1.63 11.49 -17.04 -0.20 -1.82 16 14 C 0.04 0.92 6.44 -82.78 -0.53 0.38 16 15 C 0.09 2.49 5.55 -29.04 -0.16 2.33 16 16 C -0.50 -14.85 9.09 -34.44 -0.31 -15.16 16 17 H 0.06 1.77 7.74 -52.49 -0.41 1.36 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 20 Si 0.90 22.48 29.54 -169.99 -5.02 17.46 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 N -0.26 -6.66 12.40 33.29 0.41 -6.24 16 25 N -0.08 -1.82 12.13 60.35 0.73 -1.09 16 26 H 0.07 0.13 8.14 -51.93 -0.42 -0.30 16 27 H 0.08 0.19 8.07 -51.93 -0.42 -0.23 16 28 H 0.07 0.21 6.44 -51.93 -0.33 -0.13 16 29 H 0.11 0.47 8.07 -51.93 -0.42 0.05 16 30 H 0.10 1.03 7.42 -51.93 -0.39 0.65 16 31 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.15 0.93 8.06 -52.48 -0.42 0.50 16 33 H 0.20 1.33 8.06 -52.48 -0.42 0.90 16 34 H 0.12 1.01 7.40 -51.93 -0.38 0.63 16 35 H 0.13 0.83 8.03 -51.93 -0.42 0.42 16 36 H 0.18 2.60 8.06 -52.49 -0.42 2.18 16 37 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.04 0.96 8.12 -51.93 -0.42 0.54 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 346.85 15.07 5.23 5.23 Total: -1.00 -40.74 346.85 -4.93 -45.68 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -4.86 Total: -4.78 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -1.58 Total: -7.82 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 1.16 Total: -44.91 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.15 Total: -10.85 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -40.74 -4.93 -45.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603175306.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.551 kcal (2) G-P(sol) polarization free energy of solvation -40.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds