Wall clock time and date at job start Fri Apr 10 2020 14:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34871 * 120.31030 * 2 1 4 4 C 1.38049 * 119.94859 * 179.75276 * 3 2 1 5 5 C 1.47575 * 119.72588 * 180.25537 * 4 3 2 6 6 O 1.21596 * 120.00009 * 0.27417 * 5 4 3 7 7 N 1.34781 * 120.00133 * 180.27427 * 5 4 3 8 8 C 1.46491 * 120.00062 * 180.02562 * 7 5 4 9 9 H 1.08996 * 115.51842 * 9.41260 * 8 7 5 10 10 C 1.53001 * 117.44033 * 223.99605 * 8 7 5 11 11 H 1.08998 * 119.54410 * 4.12200 * 10 8 7 12 12 C 1.57743 * 116.07995 * 161.57854 * 10 8 7 13 13 N 1.48144 * 104.61835 * 87.40945 * 12 10 8 14 14 C 1.36940 * 127.83741 * 139.75963 * 13 12 10 15 15 H 1.07997 * 120.00298 * 344.35858 * 14 13 12 16 16 C 1.38815 * 119.99489 * 164.35776 * 14 13 12 17 17 N 1.31624 * 120.00433 * 350.56955 * 16 14 13 18 18 Si 1.86802 * 119.99728 * 170.57875 * 16 14 13 19 19 H 1.48498 * 109.47503 * 59.99702 * 18 16 14 20 20 H 1.48502 * 109.47072 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46822 * 299.99341 * 18 16 14 22 22 C 1.48145 * 104.32444 * 319.76153 * 13 12 10 23 23 C 1.53000 * 117.44181 * 154.83074 * 8 7 5 24 24 H 1.09003 * 119.54415 * 355.88015 * 23 8 7 25 25 N 1.34157 * 120.54567 * 0.53343 * 4 3 2 26 26 C 1.30604 * 120.62559 * 359.74337 * 25 4 3 27 27 C 1.34958 * 120.30447 * 180.27982 * 2 1 3 28 28 O 1.21857 * 120.27475 * 359.95670 * 27 2 1 29 29 H 1.09001 * 109.47035 * 179.72084 * 1 2 3 30 30 H 1.09004 * 109.46959 * 59.72003 * 1 2 3 31 31 H 1.09000 * 109.46770 * 299.71876 * 1 2 3 32 32 H 1.07999 * 120.02239 * 0.02562 * 3 2 1 33 33 H 0.96999 * 119.99700 * 359.97438 * 7 5 4 34 34 H 1.09003 * 110.96289 * 328.34170 * 12 10 8 35 35 H 1.09000 * 109.85384 * 205.91666 * 12 10 8 36 36 H 0.96996 * 119.99880 * 180.02562 * 17 16 14 37 37 H 1.08998 * 110.40376 * 280.80316 * 22 13 12 38 38 H 1.09000 * 110.50849 * 158.41702 * 22 13 12 39 39 H 1.08004 * 119.98085 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1457 1.1643 0.0000 4 6 3.5262 1.1556 0.0052 5 6 4.2660 2.4325 0.0108 6 8 3.6596 3.4865 0.0160 7 7 5.6138 2.4305 0.0103 8 6 6.3481 3.6981 0.0165 9 1 5.7439 4.5900 0.1822 10 6 7.5464 3.8233 -0.9265 11 1 7.7768 3.0093 -1.6139 12 6 8.0330 5.2910 -1.2385 13 7 8.9901 5.6064 -0.1526 14 6 10.1797 6.2777 -0.2501 15 1 10.6393 6.4246 -1.2163 16 6 10.7948 6.7694 0.8931 17 7 10.1537 6.7570 2.0426 18 14 12.5323 7.4488 0.8000 19 1 12.5665 8.5929 -0.1461 20 1 12.9571 7.9080 2.1469 21 1 13.4546 6.3861 0.3253 22 6 8.3684 5.0307 1.0626 23 6 7.7652 3.6892 0.5934 24 1 8.1586 2.7752 1.0385 25 7 4.2007 -0.0040 -0.0006 26 6 3.5638 -1.1442 -0.0061 27 6 2.1460 -1.1652 -0.0057 28 8 1.5474 -2.2266 -0.0101 29 1 -0.3633 -1.0277 -0.0050 30 1 -0.3633 0.5182 -0.8875 31 1 -0.3633 0.5095 0.8925 32 1 1.6112 2.1028 0.0004 33 1 6.0975 1.5898 0.0066 34 1 7.1971 5.9905 -1.2234 35 1 8.5340 5.3171 -2.2062 36 1 10.5835 7.1009 2.8413 37 1 7.5849 5.6894 1.4371 38 1 9.1210 4.8604 1.8325 39 1 4.1173 -2.0716 -0.0102 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961267767.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:18 Heat of formation + Delta-G solvation = 48.729489 kcal Electronic energy + Delta-G solvation = -23682.767142 eV Core-core repulsion = 20014.531856 eV Total energy + Delta-G solvation = -3668.235286 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.31468 -39.83378 -38.43507 -37.63300 -36.42491 -34.47023 -32.62739 -31.02555 -30.17193 -28.92333 -27.00748 -25.88581 -25.11667 -24.54601 -22.16229 -20.76487 -20.38711 -19.29674 -19.09513 -18.38469 -17.31541 -16.95305 -16.83131 -16.19722 -15.98846 -15.03597 -14.93185 -14.78018 -14.60864 -14.08867 -13.95995 -13.60140 -13.24219 -13.08240 -12.89077 -12.72027 -12.21928 -11.94050 -11.54266 -11.51410 -11.47670 -10.99136 -10.80930 -10.40206 -10.29171 -10.19414 -10.14663 -9.83025 -9.72183 -9.21091 -8.78355 -8.68564 -8.28182 -6.86773 -5.79524 -3.13668 0.02532 0.81610 1.72849 2.55621 3.00735 3.34936 3.39686 3.44137 3.45366 3.68340 3.72346 4.15298 4.35406 4.40778 4.47617 4.55048 4.60489 4.81503 4.97004 5.19138 5.27982 5.38202 5.41539 5.52729 5.59763 5.75141 5.87334 5.98256 6.15487 6.24022 6.53093 6.69473 6.77332 6.90074 7.00416 7.18258 7.35549 7.53397 7.59283 7.71871 8.17753 8.20745 9.11124 9.73976 10.50983 11.34908 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.044175 B = 0.002422 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.691664 B =11557.732689 C =11750.916832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.482 5.482 3 C 0.174 3.826 4 C -0.073 4.073 5 C 0.591 3.409 6 O -0.543 6.543 7 N -0.676 5.676 8 C 0.091 3.909 9 H 0.134 0.866 10 C -0.184 4.184 11 H 0.108 0.892 12 C 0.158 3.842 13 N -0.593 5.593 14 C -0.228 4.228 15 H 0.077 0.923 16 C -0.005 4.005 17 N -0.915 5.915 18 Si 0.914 3.086 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.186 3.814 23 C -0.178 4.178 24 H 0.102 0.898 25 N -0.373 5.373 26 C 0.041 3.959 27 C 0.474 3.526 28 O -0.524 6.524 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.190 0.810 33 H 0.409 0.591 34 H 0.031 0.969 35 H 0.050 0.950 36 H 0.255 0.745 37 H 0.027 0.973 38 H 0.091 0.909 39 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.240 -14.649 -3.767 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.192 5.192 3 C 0.039 3.961 4 C -0.197 4.197 5 C 0.376 3.624 6 O -0.421 6.421 7 N -0.323 5.323 8 C -0.014 4.014 9 H 0.151 0.849 10 C -0.205 4.205 11 H 0.126 0.874 12 C 0.031 3.969 13 N -0.316 5.316 14 C -0.356 4.356 15 H 0.094 0.906 16 C -0.202 4.202 17 N -0.561 5.561 18 Si 0.743 3.257 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.060 3.940 23 C -0.199 4.199 24 H 0.120 0.880 25 N -0.088 5.088 26 C -0.150 4.150 27 C 0.271 3.729 28 O -0.399 6.399 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.207 0.793 33 H 0.245 0.755 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.109 0.891 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -18.083 -14.215 -3.609 23.283 hybrid contribution 0.245 -0.253 0.010 0.352 sum -17.839 -14.468 -3.599 23.249 Atomic orbital electron populations 1.22448 0.75582 1.06915 1.04452 1.45584 1.10421 1.06930 1.56250 1.23228 0.93594 0.91206 0.88117 1.20457 0.89646 0.93230 1.16335 1.17113 0.82352 0.86330 0.76615 1.90818 1.68396 1.31324 1.51550 1.45137 1.05357 1.09568 1.72266 1.21950 0.88045 0.87102 1.04349 0.84892 1.25098 1.00639 1.00857 0.93954 0.87428 1.21711 0.92609 0.89665 0.92950 1.45111 1.19808 1.63807 1.02856 1.18942 0.94765 1.28032 0.93852 0.90564 1.24902 0.99198 1.00042 0.96093 1.69889 1.36278 1.50706 0.99228 0.86184 0.84012 0.78764 0.76695 1.20971 1.21555 1.21078 1.21065 0.95701 0.86413 0.90870 1.24626 0.95442 1.02850 0.97023 0.87953 1.67675 1.40574 0.97843 1.02705 1.24741 0.89250 0.97590 1.03377 1.18856 0.90862 0.83397 0.79740 1.90948 1.70547 1.28042 1.50377 0.87328 0.89175 0.89151 0.79322 0.75545 0.95112 0.93104 0.93467 0.95547 0.89116 0.78865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.19 10.64 59.85 0.64 0.82 16 2 N -0.48 -3.54 2.97 -126.19 -0.38 -3.91 16 3 C 0.17 1.37 9.96 -16.29 -0.16 1.21 16 4 C -0.07 -0.77 6.71 -83.11 -0.56 -1.33 16 5 C 0.59 8.07 7.79 -12.45 -0.10 7.97 16 6 O -0.54 -8.79 15.84 5.28 0.08 -8.71 16 7 N -0.68 -9.39 5.55 -54.84 -0.30 -9.70 16 8 C 0.09 1.52 5.93 -67.93 -0.40 1.12 16 9 H 0.13 2.46 7.40 -51.93 -0.38 2.08 16 10 C -0.18 -3.25 7.34 -87.43 -0.64 -3.89 16 11 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 12 C 0.16 3.30 7.10 -0.54 0.00 3.30 16 13 N -0.59 -15.09 3.38 -166.70 -0.56 -15.66 16 14 C -0.23 -6.31 10.35 -15.06 -0.16 -6.46 16 15 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 16 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 17 N -0.92 -26.65 10.88 55.49 0.60 -26.05 16 18 Si 0.91 21.80 29.56 -169.99 -5.03 16.77 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.19 4.43 5.69 -2.41 -0.01 4.41 16 23 C -0.18 -3.34 6.97 -89.29 -0.62 -3.96 16 24 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 25 N -0.37 -3.77 9.62 -9.34 -0.09 -3.86 16 26 C 0.04 0.35 11.23 -16.72 -0.19 0.17 16 27 C 0.47 4.51 7.46 -14.82 -0.11 4.40 16 28 O -0.52 -6.27 16.49 5.05 0.08 -6.19 16 29 H 0.11 0.54 6.94 -51.93 -0.36 0.18 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.19 1.11 7.58 -52.49 -0.40 0.71 16 33 H 0.41 5.02 8.14 -40.82 -0.33 4.69 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.09 2.41 6.53 -51.93 -0.34 2.07 16 39 H 0.19 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 336.00 15.07 5.06 5.06 Total: -1.00 -33.92 336.00 -7.68 -41.60 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -4.74 Total: 3.12 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -2.41 Total: 7.52 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.73 Total: -59.17 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.17 Total: -14.90 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.92 -7.68 -41.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961267767.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.328 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds