Wall clock time and date at job start Fri Apr 10 2020 14:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 120.00329 * 2 1 4 4 O 1.21528 * 120.00334 * 184.70270 * 3 2 1 5 5 C 1.47978 * 119.99629 * 4.70087 * 3 2 1 6 6 C 1.39837 * 120.59994 * 304.41348 * 5 3 2 7 7 C 1.38462 * 118.35510 * 180.22347 * 6 5 3 8 8 C 1.38590 * 119.45702 * 359.52613 * 7 6 5 9 9 N 1.31647 * 121.17804 * 0.27838 * 8 7 6 10 10 C 1.32459 * 121.79978 * 359.97438 * 9 8 7 11 11 C 1.48306 * 119.80478 * 180.02562 * 10 9 8 12 12 N 1.34784 * 119.99504 * 354.11293 * 11 10 9 13 13 O 1.21495 * 120.00513 * 174.11007 * 11 10 9 14 14 C 1.46498 * 119.99634 * 179.97438 * 2 1 3 15 15 C 1.53950 * 113.74542 * 38.74213 * 14 2 1 16 16 N 1.47812 * 86.03732 * 222.08408 * 15 14 2 17 17 C 1.36939 * 134.45546 * 204.64307 * 16 15 14 18 18 H 1.08002 * 119.99732 * 179.87023 * 17 16 15 19 19 C 1.38802 * 119.99900 * 359.86787 * 17 16 15 20 20 N 1.31616 * 120.00531 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00109 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.47152 * 59.99569 * 21 19 17 23 23 H 1.48497 * 109.47520 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47039 * 300.00117 * 21 19 17 25 25 C 1.47584 * 91.05172 * 24.54838 * 16 15 14 26 26 H 1.09002 * 109.46725 * 84.87070 * 1 2 3 27 27 H 1.08997 * 109.47750 * 204.87392 * 1 2 3 28 28 H 1.08997 * 109.47368 * 324.87946 * 1 2 3 29 29 H 1.08004 * 120.82758 * 0.02562 * 6 5 3 30 30 H 1.08002 * 120.27413 * 179.80733 * 7 6 5 31 31 H 1.08000 * 119.41639 * 180.25096 * 8 7 6 32 32 H 0.96998 * 119.99836 * 359.97438 * 12 11 10 33 33 H 0.96995 * 119.99388 * 180.02562 * 12 11 10 34 34 H 1.09004 * 112.94332 * 170.33462 * 14 2 1 35 35 H 1.09002 * 113.76571 * 336.34834 * 15 14 2 36 36 H 1.08990 * 113.76942 * 107.74457 * 15 14 2 37 37 H 0.97000 * 120.00748 * 180.02562 * 20 19 17 38 38 H 1.09002 * 113.76952 * 221.14838 * 25 16 15 39 39 H 1.09006 * 113.76951 * 89.75586 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3512 1.1689 -0.0863 5 6 1.4028 2.4465 0.1050 6 6 0.3901 2.7619 -0.8062 7 6 -0.2654 3.9737 -0.6675 8 6 0.0901 4.8265 0.3655 9 7 1.0440 4.5076 1.2149 10 6 1.7056 3.3636 1.1242 11 6 2.7721 3.0491 2.1056 12 7 3.1475 3.9732 3.0121 13 8 3.3074 1.9585 2.0924 14 6 2.1974 -1.2688 0.0006 15 6 1.5554 -2.3555 -0.8808 16 7 1.8609 -3.2879 0.2247 17 6 2.0637 -4.6394 0.3112 18 1 2.2806 -5.0928 1.2671 19 6 1.9904 -5.4265 -0.8298 20 7 1.7255 -4.8741 -1.9946 21 14 2.2663 -7.2703 -0.7118 22 1 1.2557 -7.8647 0.1998 23 1 2.1340 -7.8779 -2.0603 24 1 3.6278 -7.5341 -0.1808 25 6 1.8619 -2.1776 1.1970 26 1 -0.3633 0.0919 -1.0236 27 1 -0.3634 -0.9323 0.4322 28 1 -0.3634 0.8405 0.5912 29 1 0.1278 2.0787 -1.6005 30 1 -1.0503 4.2501 -1.3559 31 1 -0.4244 5.7697 0.4755 32 1 2.7203 4.8440 3.0224 33 1 3.8452 3.7676 3.6537 34 1 3.2669 -1.1421 -0.1680 35 1 0.4886 -2.2099 -1.0507 36 1 2.1090 -2.5620 -1.7967 37 1 1.6739 -5.4242 -2.7919 38 1 2.6597 -2.2423 1.9369 39 1 0.8853 -1.9796 1.6389 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044326791.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:22 Heat of formation + Delta-G solvation = 42.462468 kcal Electronic energy + Delta-G solvation = -24937.931666 eV Core-core repulsion = 21269.424621 eV Total energy + Delta-G solvation = -3668.507045 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.15487 -39.29242 -38.78682 -37.39169 -34.50398 -33.88965 -32.70118 -31.96717 -31.53698 -27.71091 -26.70021 -25.39107 -24.74770 -24.59020 -22.90840 -21.28336 -20.24034 -18.61610 -18.22231 -17.43152 -17.13673 -16.77695 -16.48012 -15.94072 -15.44867 -15.16349 -14.89630 -14.63332 -14.44812 -13.80017 -13.73821 -13.66330 -13.51352 -12.74470 -12.70251 -12.42345 -12.11271 -11.73464 -11.47474 -11.24464 -10.85907 -10.67484 -10.61020 -10.33354 -10.16027 -10.05622 -9.89454 -9.72177 -9.54236 -9.50885 -9.34020 -8.77161 -8.05159 -6.87533 -5.75674 -3.08052 0.24461 0.70161 2.58531 2.95110 3.18818 3.25645 3.42586 3.46132 3.47421 3.63131 3.91868 4.41920 4.43898 4.51636 4.59369 4.64303 5.06145 5.09721 5.25087 5.32257 5.47204 5.52659 5.61084 5.63201 5.78838 5.87011 6.07726 6.16335 6.24199 6.51412 6.66781 6.67392 6.84523 7.11197 7.22719 7.37788 7.41513 7.54814 7.80268 7.98410 8.16955 8.53014 9.05543 9.71571 10.59397 11.41621 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.027213 B = 0.003521 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.658207 B = 7949.993044 C = 8605.493663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.594 5.594 3 C 0.562 3.438 4 O -0.503 6.503 5 C -0.109 4.109 6 C -0.053 4.053 7 C -0.151 4.151 8 C 0.106 3.894 9 N -0.461 5.461 10 C 0.115 3.885 11 C 0.563 3.437 12 N -0.840 5.840 13 O -0.490 6.490 14 C 0.097 3.903 15 C 0.157 3.843 16 N -0.606 5.606 17 C -0.222 4.222 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.109 3.891 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.151 0.849 30 H 0.148 0.852 31 H 0.167 0.833 32 H 0.407 0.593 33 H 0.405 0.595 34 H 0.117 0.883 35 H 0.031 0.969 36 H 0.077 0.923 37 H 0.254 0.746 38 H 0.048 0.952 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.928 23.025 4.482 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.327 5.327 3 C 0.347 3.653 4 O -0.377 6.377 5 C -0.116 4.116 6 C -0.080 4.080 7 C -0.171 4.171 8 C -0.053 4.053 9 N -0.173 5.173 10 C -0.025 4.025 11 C 0.344 3.656 12 N -0.405 5.405 13 O -0.361 6.361 14 C -0.007 4.007 15 C 0.031 3.969 16 N -0.333 5.333 17 C -0.349 4.349 18 H 0.099 0.901 19 C -0.203 4.203 20 N -0.569 5.569 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.210 1.210 25 C -0.018 4.018 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.169 0.831 30 H 0.165 0.835 31 H 0.184 0.816 32 H 0.237 0.763 33 H 0.236 0.764 34 H 0.135 0.865 35 H 0.049 0.951 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.741 22.433 4.834 23.655 hybrid contribution -0.432 -1.100 -0.403 1.249 sum -6.173 21.333 4.430 22.646 Atomic orbital electron populations 1.21829 0.80305 1.03202 1.01282 1.47853 1.06555 1.05857 1.72406 1.17817 0.87127 0.82813 0.77561 1.90794 1.12903 1.86362 1.47663 1.21086 0.96935 0.97053 0.96484 1.21901 0.91883 0.96776 0.97401 1.22342 1.00876 0.94387 0.99486 1.22913 0.92862 0.99461 0.90078 1.67547 1.06813 1.16382 1.26525 1.21165 0.96091 0.90312 0.94952 1.17868 0.82037 0.84807 0.80894 1.43559 1.42877 1.18129 1.35936 1.91034 1.53311 1.22034 1.69743 1.24031 0.98094 0.79249 0.99284 1.22681 0.96772 0.83553 0.93902 1.45689 1.81954 1.02158 1.03476 1.18960 1.41403 0.80243 0.94324 0.90110 1.24784 1.02000 0.98218 0.95340 1.69801 1.54682 1.34360 0.98010 0.86168 0.78114 0.84676 0.76607 1.21190 1.21546 1.21000 1.22965 0.98012 0.87140 0.93640 0.92527 0.89890 0.92402 0.83145 0.83462 0.81609 0.76305 0.76373 0.86525 0.95116 0.90493 0.93557 0.93378 0.94812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.05 7.91 59.85 0.47 1.52 16 2 N -0.59 -10.48 3.09 -176.80 -0.55 -11.02 16 3 C 0.56 10.20 5.79 -12.27 -0.07 10.13 16 4 O -0.50 -11.17 14.27 -18.60 -0.27 -11.44 16 5 C -0.11 -1.52 4.69 -104.49 -0.49 -2.01 16 6 C -0.05 -0.52 8.15 -38.90 -0.32 -0.84 16 7 C -0.15 -1.02 10.10 -39.37 -0.40 -1.42 16 8 C 0.11 0.76 11.17 -17.50 -0.20 0.57 16 9 N -0.46 -4.69 9.55 -9.51 -0.09 -4.78 16 10 C 0.11 1.52 6.78 -82.64 -0.56 0.96 16 11 C 0.56 8.27 8.00 -12.12 -0.10 8.17 16 12 N -0.84 -8.27 8.86 30.64 0.27 -7.99 16 13 O -0.49 -9.51 13.82 -18.57 -0.26 -9.76 16 14 C 0.10 2.06 4.41 -70.14 -0.31 1.75 16 15 C 0.16 3.77 6.93 -2.84 -0.02 3.75 16 16 N -0.61 -16.10 3.70 -177.86 -0.66 -16.76 16 17 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 18 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 19 C -0.01 -0.20 5.50 -17.44 -0.10 -0.29 16 20 N -0.92 -27.52 11.39 55.49 0.63 -26.89 16 21 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.11 2.44 8.44 -2.96 -0.02 2.41 16 26 H 0.06 0.65 7.42 -51.93 -0.39 0.27 16 27 H 0.08 1.22 6.16 -51.93 -0.32 0.90 16 28 H 0.06 0.66 6.50 -51.93 -0.34 0.32 16 29 H 0.15 1.25 7.05 -52.48 -0.37 0.88 16 30 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 31 H 0.17 0.58 8.06 -52.49 -0.42 0.15 16 32 H 0.41 3.03 8.18 -40.82 -0.33 2.69 16 33 H 0.41 3.36 8.93 -40.82 -0.36 2.99 16 34 H 0.12 2.75 7.20 -51.93 -0.37 2.38 16 35 H 0.03 0.72 6.71 -51.93 -0.35 0.37 16 36 H 0.08 2.06 7.17 -51.93 -0.37 1.69 16 37 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.03 0.71 6.92 -51.93 -0.36 0.35 16 LS Contribution 326.77 15.07 4.92 4.92 Total: -1.00 -37.57 326.77 -7.66 -45.23 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -4.38 Total: 2.90 kcal Atomic # 6 Polarization: 20.44 SS G_CDS: -2.27 Total: 18.17 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: -0.39 Total: -67.45 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.52 Total: -21.20 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -37.57 -7.66 -45.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044326791.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.697 kcal (2) G-P(sol) polarization free energy of solvation -37.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds