Wall clock time and date at job start Fri Apr 10 2020 14:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34777 * 120.00519 * 2 1 4 4 O 1.21504 * 120.00716 * 185.90825 * 3 2 1 5 5 C 1.48236 * 119.99350 * 5.90934 * 3 2 1 6 6 C 1.39626 * 119.65005 * 186.62050 * 5 3 2 7 7 C 1.38545 * 119.24382 * 179.73349 * 6 5 3 8 8 C 1.38583 * 118.55040 * 0.53377 * 7 6 5 9 9 C 1.39586 * 119.24851 * 359.72849 * 8 7 6 10 10 C 1.48224 * 119.65346 * 179.97438 * 9 8 7 11 11 N 1.34775 * 120.00351 * 180.02562 * 10 9 8 12 12 O 1.21509 * 120.00087 * 0.02562 * 10 9 8 13 13 N 1.32333 * 119.65241 * 6.89688 * 5 3 2 14 14 C 1.46499 * 120.00049 * 180.02562 * 2 1 3 15 15 C 1.53505 * 114.20791 * 59.99795 * 14 2 1 16 16 N 1.47065 * 87.98300 * 220.15095 * 15 14 2 17 17 C 1.36938 * 136.05069 * 207.08423 * 16 15 14 18 18 H 1.07997 * 120.00485 * 354.72765 * 17 16 15 19 19 C 1.38812 * 119.99786 * 174.72593 * 17 16 15 20 20 N 1.31620 * 120.00138 * 183.88836 * 19 17 16 21 21 Si 1.86797 * 120.00082 * 3.89120 * 19 17 16 22 22 H 1.48505 * 109.47454 * 174.49384 * 21 19 17 23 23 H 1.48503 * 109.47064 * 294.49144 * 21 19 17 24 24 H 1.48503 * 109.47139 * 54.49209 * 21 19 17 25 25 C 1.47064 * 87.88994 * 27.33935 * 16 15 14 26 26 H 1.09001 * 109.46807 * 275.68472 * 1 2 3 27 27 H 1.08998 * 109.47409 * 35.68497 * 1 2 3 28 28 H 1.09000 * 109.47294 * 155.68942 * 1 2 3 29 29 H 1.07995 * 120.38081 * 359.97438 * 6 5 3 30 30 H 1.08000 * 120.72455 * 180.23363 * 7 6 5 31 31 H 1.08003 * 120.37616 * 179.75694 * 8 7 6 32 32 H 0.97011 * 119.99577 * 0.02562 * 11 10 9 33 33 H 0.96998 * 120.00649 * 179.97438 * 11 10 9 34 34 H 1.09002 * 113.28317 * 193.05981 * 14 2 1 35 35 H 1.09000 * 113.46813 * 105.36635 * 15 14 2 36 36 H 1.08998 * 113.46120 * 334.92965 * 15 14 2 37 37 H 0.96998 * 119.99965 * 5.01444 * 20 19 17 38 38 H 1.09001 * 113.46509 * 87.43464 * 25 16 15 39 39 H 1.09001 * 113.46736 * 217.87822 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3491 1.1700 -0.1083 5 6 1.4036 2.4475 0.1322 6 6 2.0896 3.6556 -0.0074 7 6 1.3930 4.8472 0.1122 8 6 0.0340 4.7961 0.3789 9 6 -0.5886 3.5539 0.5122 10 6 -2.0415 3.4887 0.7981 11 7 -2.6498 2.2932 0.9287 12 8 -2.6844 4.5133 0.9146 13 7 0.1051 2.4334 0.3867 14 6 2.1974 -1.2687 -0.0006 15 6 1.9059 -2.1633 -1.2134 16 7 1.9167 -3.3161 -0.3003 17 6 2.1883 -4.6542 -0.4049 18 1 2.3944 -5.0894 -1.3715 19 6 2.1985 -5.4512 0.7316 20 7 2.5342 -6.7207 0.6421 21 14 1.7358 -4.7220 2.3879 22 1 1.6959 -5.7993 3.4093 23 1 2.7445 -3.7052 2.7803 24 1 0.3994 -4.0819 2.2911 25 6 1.5014 -2.4006 0.7731 26 1 -0.3633 0.1018 1.0226 27 1 -0.3634 0.8347 -0.5994 28 1 -0.3634 -0.9365 -0.4231 29 1 3.1503 3.6611 -0.2102 30 1 1.8990 5.7953 0.0049 31 1 -0.5370 5.7070 0.4819 32 1 -2.1365 1.4752 0.8361 33 1 -3.6005 2.2505 1.1161 34 1 3.2575 -1.1543 0.2257 35 1 2.7144 -2.1808 -1.9443 36 1 0.9319 -1.9771 -1.6659 37 1 2.8443 -7.0820 -0.2031 38 1 0.4208 -2.2770 0.8443 39 1 1.9654 -2.6203 1.7347 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044349041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:07 Heat of formation + Delta-G solvation = 56.025595 kcal Electronic energy + Delta-G solvation = -24642.030303 eV Core-core repulsion = 20974.111400 eV Total energy + Delta-G solvation = -3667.918903 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33665 -39.98769 -39.03587 -37.95961 -35.04286 -34.19188 -32.88579 -32.28225 -31.78045 -28.13401 -26.99133 -25.46169 -25.30299 -25.10555 -22.76704 -21.46635 -20.36199 -19.22096 -18.22338 -17.91211 -17.51251 -17.21306 -16.54702 -16.35065 -15.91948 -15.69167 -15.30673 -15.17835 -14.67441 -14.18076 -14.01094 -13.85156 -13.52469 -13.20679 -12.92633 -12.58885 -12.32267 -12.18081 -12.00846 -11.62493 -11.37292 -10.97553 -10.62505 -10.48250 -10.42240 -10.30426 -10.09746 -9.71785 -9.64903 -9.40106 -9.20593 -8.98793 -8.38819 -7.23382 -6.36808 -3.30893 0.07630 0.46525 2.12331 2.75881 2.82250 2.92945 3.35546 3.38949 3.50810 3.60834 3.64943 4.20824 4.39287 4.47425 4.52991 4.53810 4.74332 4.94760 5.01089 5.04600 5.28329 5.34361 5.42802 5.59033 5.61449 5.66643 5.77591 5.84832 6.02086 6.08418 6.17246 6.30747 6.33762 6.39399 6.76598 6.88021 6.99986 7.13905 7.39807 7.80402 8.05093 8.17607 8.90961 9.42355 10.25837 11.14686 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.021409 B = 0.003733 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.563821 B = 7499.119858 C = 8273.412567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.578 5.578 3 C 0.566 3.434 4 O -0.530 6.530 5 C 0.086 3.914 6 C -0.086 4.086 7 C -0.086 4.086 8 C -0.091 4.091 9 C 0.065 3.935 10 C 0.582 3.418 11 N -0.834 5.834 12 O -0.537 6.537 13 N -0.426 5.426 14 C 0.099 3.901 15 C 0.113 3.887 16 N -0.620 5.620 17 C -0.304 4.304 18 H 0.085 0.915 19 C -0.022 4.022 20 N -0.932 5.932 21 Si 1.072 2.928 22 H -0.294 1.294 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.084 3.916 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.412 0.588 33 H 0.407 0.593 34 H 0.127 0.873 35 H 0.052 0.948 36 H 0.041 0.959 37 H 0.262 0.738 38 H 0.049 0.951 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.398 23.943 -0.492 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.308 5.308 3 C 0.352 3.648 4 O -0.407 6.407 5 C -0.055 4.055 6 C -0.107 4.107 7 C -0.112 4.112 8 C -0.112 4.112 9 C -0.076 4.076 10 C 0.365 3.635 11 N -0.398 5.398 12 O -0.413 6.413 13 N -0.141 5.141 14 C -0.005 4.005 15 C -0.015 4.015 16 N -0.348 5.348 17 C -0.430 4.430 18 H 0.103 0.897 19 C -0.221 4.221 20 N -0.574 5.574 21 Si 0.906 3.094 22 H -0.221 1.221 23 H -0.219 1.219 24 H -0.216 1.216 25 C -0.042 4.042 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.174 0.826 30 H 0.169 0.831 31 H 0.171 0.829 32 H 0.243 0.757 33 H 0.239 0.761 34 H 0.144 0.856 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.646 23.162 1.148 24.419 hybrid contribution 0.320 0.681 -1.740 1.896 sum -7.326 23.843 -0.592 24.950 Atomic orbital electron populations 1.22153 0.78910 1.02775 1.02311 1.47755 1.07640 1.05393 1.70027 1.17866 0.86531 0.82725 0.77694 1.90798 1.13071 1.86525 1.50265 1.21265 0.89491 0.94649 1.00064 1.22393 1.02542 0.91496 0.94293 1.21693 0.93662 0.99124 0.96714 1.22324 0.95236 0.99009 0.94604 1.21163 0.94597 0.89837 1.01956 1.17785 0.85614 0.83965 0.76161 1.43723 1.13909 1.08674 1.73508 1.90840 1.65234 1.34228 1.50959 1.67970 1.07712 1.29608 1.08804 1.23700 0.97803 0.79384 0.99581 1.22748 0.98879 0.86056 0.93797 1.45779 1.79202 1.03923 1.05888 1.20147 1.46327 0.80214 0.96282 0.89735 1.25720 0.99689 0.94987 1.01712 1.70916 1.45788 1.12176 1.28477 0.83687 0.76044 0.73657 0.76061 1.22118 1.21913 1.21640 1.23272 0.97756 0.88207 0.94955 0.92201 0.89796 0.90922 0.82641 0.83077 0.82928 0.75736 0.76123 0.85573 0.93004 0.94153 0.92801 0.93345 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 7.29 59.84 0.44 1.36 16 2 N -0.58 -8.46 3.11 -174.52 -0.54 -9.01 16 3 C 0.57 8.26 7.65 -12.15 -0.09 8.17 16 4 O -0.53 -9.18 15.89 5.36 0.09 -9.09 16 5 C 0.09 0.99 6.56 -83.02 -0.54 0.44 16 6 C -0.09 -0.79 9.63 -38.95 -0.38 -1.16 16 7 C -0.09 -0.58 10.16 -39.34 -0.40 -0.98 16 8 C -0.09 -0.72 9.63 -38.95 -0.38 -1.09 16 9 C 0.06 0.62 6.75 -83.03 -0.56 0.06 16 10 C 0.58 5.74 8.09 -12.16 -0.10 5.64 16 11 N -0.83 -5.91 8.86 30.62 0.27 -5.64 16 12 O -0.54 -6.74 17.16 5.36 0.09 -6.65 16 13 N -0.43 -4.36 5.37 -6.38 -0.03 -4.39 16 14 C 0.10 1.78 4.55 -67.67 -0.31 1.47 16 15 C 0.11 2.20 8.23 -8.49 -0.07 2.13 16 16 N -0.62 -14.97 3.69 -184.59 -0.68 -15.65 16 17 C -0.30 -8.65 11.09 -15.06 -0.17 -8.82 16 18 H 0.08 2.53 8.05 -52.49 -0.42 2.11 16 19 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 20 N -0.93 -29.13 13.70 55.49 0.76 -28.37 16 21 Si 1.07 26.41 25.10 -169.99 -4.27 22.14 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.29 -6.80 6.33 56.52 0.36 -6.44 16 24 H -0.29 -6.56 6.69 56.52 0.38 -6.18 16 25 C 0.08 1.72 5.34 -8.36 -0.04 1.68 16 26 H 0.06 0.60 7.54 -51.93 -0.39 0.21 16 27 H 0.08 0.83 5.79 -51.93 -0.30 0.53 16 28 H 0.07 0.85 5.95 -51.93 -0.31 0.54 16 29 H 0.16 1.31 7.65 -52.49 -0.40 0.91 16 30 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 31 H 0.15 1.03 7.64 -52.48 -0.40 0.63 16 32 H 0.41 2.61 7.01 -40.82 -0.29 2.33 16 33 H 0.41 2.18 8.93 -40.82 -0.36 1.81 16 34 H 0.13 2.44 7.34 -51.93 -0.38 2.06 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.04 0.73 7.05 -51.93 -0.37 0.36 16 37 H 0.26 8.08 8.73 -40.82 -0.36 7.72 16 38 H 0.05 0.91 6.37 -51.93 -0.33 0.58 16 39 H 0.06 1.29 4.00 -51.93 -0.21 1.09 16 LS Contribution 321.73 15.07 4.85 4.85 Total: -1.00 -35.26 321.73 -6.39 -41.65 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.23 Total: 2.00 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -2.69 Total: 8.15 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: -0.23 Total: -63.06 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.18 Total: -15.74 kcal Atomic # 14 Polarization: 26.41 SS G_CDS: -4.27 Total: 22.14 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.26 -6.39 -41.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044349041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.673 kcal (2) G-P(sol) polarization free energy of solvation -35.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds