Wall clock time and date at job start Fri Apr 10 2020 14:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47019 * 111.00249 * 2 1 4 4 C 1.53095 * 109.28236 * 182.40664 * 3 2 1 5 5 O 1.43028 * 109.28025 * 303.09241 * 4 3 2 6 6 C 1.43040 * 113.67684 * 58.57497 * 5 4 3 7 7 C 1.52980 * 109.51643 * 61.53527 * 6 5 4 8 8 C 1.53052 * 109.52856 * 58.66376 * 7 6 5 9 9 C 1.53194 * 109.30424 * 61.29846 * 8 7 6 10 10 N 1.46929 * 108.79806 * 305.34837 * 9 8 7 11 11 S 1.65597 * 120.63293 * 233.59108 * 10 9 8 12 12 O 1.42105 * 106.40277 * 203.54166 * 11 10 9 13 13 O 1.42099 * 106.40423 * 336.46295 * 11 10 9 14 14 C 1.76201 * 107.21900 * 90.00375 * 11 10 9 15 15 H 1.08004 * 119.99802 * 359.97438 * 14 11 10 16 16 C 1.37874 * 120.00108 * 179.97438 * 14 11 10 17 17 N 1.31510 * 120.00456 * 179.97438 * 16 14 11 18 18 Si 1.86810 * 119.99971 * 359.97438 * 16 14 11 19 19 H 1.48499 * 109.46735 * 89.99821 * 18 16 14 20 20 H 1.48502 * 109.47049 * 209.99935 * 18 16 14 21 21 H 1.48498 * 109.46949 * 330.00131 * 18 16 14 22 22 C 1.46940 * 118.73072 * 53.61319 * 10 9 8 23 23 C 1.47031 * 111.00053 * 123.63228 * 2 1 3 24 24 H 1.08999 * 109.46989 * 63.95162 * 1 2 3 25 25 H 1.09003 * 109.47173 * 183.95059 * 1 2 3 26 26 H 1.09000 * 109.46930 * 303.95510 * 1 2 3 27 27 H 1.08996 * 109.49757 * 62.45939 * 3 2 1 28 28 H 1.08998 * 109.50048 * 302.35007 * 3 2 1 29 29 H 1.09002 * 109.51050 * 63.05022 * 4 3 2 30 30 H 1.08997 * 109.50846 * 183.14585 * 4 3 2 31 31 H 1.09002 * 109.46634 * 178.68097 * 7 6 5 32 32 H 1.09001 * 109.46197 * 298.66270 * 7 6 5 33 33 H 1.09005 * 109.49818 * 181.24687 * 8 7 6 34 34 H 1.09005 * 109.49957 * 301.31040 * 8 7 6 35 35 H 1.08991 * 109.58196 * 65.14319 * 9 8 7 36 36 H 1.09001 * 109.58299 * 185.55588 * 9 8 7 37 37 H 0.96999 * 120.00560 * 180.02562 * 17 16 14 38 38 H 1.08990 * 109.58943 * 186.68373 * 22 10 9 39 39 H 1.09004 * 109.58409 * 66.25567 * 22 10 9 40 40 H 1.09001 * 109.50667 * 297.64402 * 23 2 1 41 41 H 1.08998 * 109.50603 * 57.77800 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3270 -0.0607 5 8 4.0187 0.5592 1.0405 6 6 3.5244 -0.7827 1.0725 7 6 3.9677 -1.5209 -0.1919 8 6 5.4957 -1.5143 -0.2791 9 6 6.0755 -2.2436 0.9369 10 7 5.5386 -1.6284 2.1584 11 16 6.5557 -1.0884 3.3485 12 8 5.7980 -1.0800 4.5506 13 8 7.7686 -1.8136 3.1993 14 6 6.9343 0.5941 2.9872 15 1 6.5116 1.0671 2.1132 16 6 7.7703 1.3068 3.8204 17 7 8.0534 2.5624 3.5506 18 14 8.5010 0.4888 5.3326 19 1 9.7988 -0.1393 4.9772 20 1 8.7176 1.5081 6.3907 21 1 7.5674 -0.5524 5.8320 22 6 4.0819 -1.5018 2.3040 23 6 1.9959 -0.7603 1.1429 24 1 -0.3633 0.4513 -0.9233 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3633 0.5740 0.8524 27 1 1.6828 1.8824 0.9110 28 1 1.6131 1.9092 -0.8680 29 1 3.8386 0.8646 -0.9966 30 1 3.9218 2.3406 -0.0046 31 1 3.6105 -2.5501 -0.1557 32 1 3.5520 -1.0228 -1.0678 33 1 5.8103 -2.0211 -1.1914 34 1 5.8549 -0.4852 -0.2923 35 1 5.7910 -3.2952 0.9021 36 1 7.1620 -2.1567 0.9313 37 1 8.6418 3.0637 4.1365 38 1 3.8530 -0.9241 3.1994 39 1 3.6350 -2.4930 2.3819 40 1 1.6813 -0.2853 2.0721 41 1 1.6149 -1.7809 1.1078 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278256960.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:24 Heat of formation + Delta-G solvation = -134.907056 kcal Electronic energy + Delta-G solvation = -25448.434766 eV Core-core repulsion = 21875.387602 eV Total energy + Delta-G solvation = -3573.047164 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.37288 -38.17972 -37.73473 -36.49169 -36.34898 -35.12979 -33.13224 -32.75179 -30.05912 -28.47664 -27.72707 -25.63248 -24.98430 -23.60748 -22.22293 -20.62352 -20.05275 -19.32592 -18.65324 -17.41159 -17.21097 -17.11827 -16.51357 -16.22472 -15.92671 -15.80324 -15.51715 -15.25333 -15.01740 -14.76366 -14.65360 -14.37394 -13.70480 -13.49120 -13.46901 -13.27701 -13.23600 -12.97820 -12.83481 -12.76202 -12.67721 -12.57125 -12.25781 -12.00352 -11.85871 -11.73063 -11.58812 -11.30999 -11.22996 -10.92033 -10.38777 -9.72468 -9.34230 -8.91357 -7.42581 0.14609 1.02480 1.12333 1.19461 1.89312 2.42539 2.46112 2.86599 2.90324 3.41167 3.71552 3.81994 3.90037 4.02243 4.09939 4.15568 4.23245 4.27388 4.34208 4.45316 4.57598 4.58399 4.67981 4.68809 4.72156 4.77374 4.82533 4.88854 4.91858 5.02673 5.04700 5.06277 5.31975 5.38540 5.47651 5.50294 5.87494 5.93270 6.03084 6.18129 6.45882 6.60494 8.26967 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.021605 B = 0.005852 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.661988 B = 4783.320253 C = 5208.308553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.538 5.538 3 C 0.024 3.976 4 C 0.054 3.946 5 O -0.390 6.390 6 C 0.100 3.900 7 C -0.118 4.118 8 C -0.130 4.130 9 C 0.115 3.885 10 N -0.990 5.990 11 S 2.693 3.307 12 O -1.030 7.030 13 O -1.030 7.030 14 C -1.022 5.022 15 H 0.106 0.894 16 C 0.108 3.892 17 N -0.857 5.857 18 Si 0.820 3.180 19 H -0.239 1.239 20 H -0.220 1.220 21 H -0.231 1.231 22 C 0.131 3.869 23 C 0.034 3.966 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.022 0.978 27 H 0.029 0.971 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.044 0.956 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.288 0.712 38 H 0.070 0.930 39 H 0.116 0.884 40 H 0.032 0.968 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.566 -7.158 -10.459 19.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.263 5.263 3 C -0.105 4.105 4 C -0.023 4.023 5 O -0.309 6.309 6 C 0.058 3.942 7 C -0.156 4.156 8 C -0.168 4.168 9 C -0.009 4.009 10 N -0.828 5.828 11 S 2.795 3.205 12 O -1.021 7.021 13 O -1.020 7.020 14 C -1.155 5.155 15 H 0.125 0.875 16 C -0.108 4.108 17 N -0.488 5.488 18 Si 0.637 3.363 19 H -0.162 1.162 20 H -0.142 1.142 21 H -0.154 1.154 22 C 0.005 3.995 23 C -0.094 4.094 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.123 0.877 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.063 0.937 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.134 0.866 40 H 0.050 0.950 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.889 -7.670 -9.984 18.746 hybrid contribution 0.197 1.501 1.004 1.817 sum -13.692 -6.169 -8.980 17.498 Atomic orbital electron populations 1.22457 0.85438 1.03005 1.01386 1.62246 1.09287 1.13055 1.41664 1.22764 0.95649 0.90224 1.01814 1.22747 0.92956 0.96149 0.90447 1.88264 1.70455 1.23668 1.48530 1.22032 0.92299 0.83224 0.96597 1.21861 0.94849 1.01736 0.97132 1.21856 0.96492 1.00643 0.97847 1.21614 0.98434 0.97764 0.83091 1.57190 1.15820 1.75703 1.34110 1.00628 0.72170 0.75509 0.72197 1.93403 1.72621 1.89388 1.46647 1.93354 1.46840 1.75010 1.86771 1.31018 1.40849 1.21822 1.21848 0.87546 1.25169 0.92619 0.94771 0.98243 1.70031 1.31796 1.08895 1.38063 0.87577 0.83274 0.82888 0.82533 1.16195 1.14202 1.15387 1.21529 0.79188 1.01447 0.97318 1.22688 0.93862 1.00790 0.92107 0.89963 0.89841 0.95952 0.95315 0.87662 0.91381 0.89491 0.88714 0.89703 0.88201 0.93673 0.88522 0.91078 0.90163 0.91134 0.86619 0.94994 0.86904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.63 127.69 1.23 1.60 16 2 N -0.54 -10.98 4.34 -921.54 -4.00 -14.98 16 3 C 0.02 0.54 5.66 86.31 0.49 1.03 16 4 C 0.05 1.53 6.61 72.01 0.48 2.00 16 5 O -0.39 -14.30 9.48 -148.98 -1.41 -15.71 16 6 C 0.10 2.88 0.70 -10.75 -0.01 2.87 16 7 C -0.12 -2.77 4.22 30.61 0.13 -2.64 16 8 C -0.13 -3.55 5.94 30.68 0.18 -3.37 16 9 C 0.12 3.74 6.38 86.36 0.55 4.29 16 10 N -0.99 -39.51 3.23 -513.17 -1.66 -41.17 16 11 S 2.69 141.50 4.19 -56.49 -0.24 141.27 16 12 O -1.03 -57.47 14.73 -128.00 -1.89 -59.35 16 13 O -1.03 -56.71 15.55 -128.00 -1.99 -58.70 16 14 C -1.02 -60.92 10.29 67.73 0.70 -60.22 16 15 H 0.11 6.67 8.06 -2.91 -0.02 6.64 16 16 C 0.11 6.49 5.47 84.65 0.46 6.95 16 17 N -0.86 -51.85 13.96 21.45 0.30 -51.55 16 18 Si 0.82 42.90 26.54 68.60 1.82 44.72 16 19 H -0.24 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.22 -10.14 7.11 99.48 0.71 -9.43 16 21 H -0.23 -12.45 5.60 99.48 0.56 -11.89 16 22 C 0.13 4.37 5.33 86.34 0.46 4.83 16 23 C 0.03 0.78 4.35 86.29 0.38 1.16 16 24 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 26 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 1.75 6.53 -2.39 -0.02 1.74 16 30 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 1.88 6.17 -2.39 -0.01 1.86 16 33 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.04 1.53 7.62 -2.38 -0.02 1.51 16 35 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.07 2.57 7.13 -2.39 -0.02 2.56 16 37 H 0.29 15.71 8.31 -92.71 -0.77 14.94 16 38 H 0.07 2.72 7.13 -2.39 -0.02 2.70 16 39 H 0.12 2.86 8.14 -2.38 -0.02 2.84 16 40 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.11 1.92 8.11 -2.39 -0.02 1.90 16 Total: -1.00 -75.45 324.97 -3.16 -78.61 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.86 Total: 18.37 kcal Atomic # 6 Polarization: -46.54 SS G_CDS: 5.04 Total: -41.50 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -5.36 Total: -107.71 kcal Atomic # 8 Polarization: -128.48 SS G_CDS: -5.29 Total: -133.77 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.82 Total: 44.72 kcal Atomic # 16 Polarization: 141.50 SS G_CDS: -0.24 Total: 141.27 kcal Total: -75.45 -3.16 -78.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278256960.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.297 kcal (2) G-P(sol) polarization free energy of solvation -75.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds