Wall clock time and date at job start Fri Apr 10 2020 14:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 119.99736 * 2 1 4 4 O 1.21282 * 119.99620 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00369 * 359.97438 * 3 2 1 6 6 C 1.52997 * 109.47466 * 180.02562 * 5 3 2 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 3 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47294 * 60.00559 * 11 9 7 13 13 H 1.48503 * 109.46954 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47431 * 300.00157 * 11 9 7 15 15 C 1.46505 * 120.00149 * 179.97438 * 2 1 3 16 16 H 1.08998 * 110.63664 * 179.30104 * 15 2 1 17 17 C 1.55154 * 110.71852 * 56.15881 * 15 2 1 18 18 C 1.55382 * 101.36804 * 277.04358 * 17 15 2 19 19 N 1.47421 * 104.87659 * 323.01773 * 18 17 15 20 20 S 1.65594 * 125.65370 * 204.09997 * 19 18 17 21 21 C 1.81400 * 104.45004 * 270.03933 * 20 19 18 22 22 O 1.42102 * 104.27793 * 26.10700 * 20 19 18 23 23 O 1.42099 * 104.28295 * 153.96813 * 20 19 18 24 24 C 1.47031 * 108.70171 * 24.13103 * 19 18 17 25 25 H 1.08996 * 109.46784 * 90.00263 * 1 2 3 26 26 H 1.09003 * 109.47146 * 209.99886 * 1 2 3 27 27 H 1.08994 * 109.47096 * 330.00470 * 1 2 3 28 28 H 1.09002 * 109.47120 * 59.99760 * 5 3 2 29 29 H 1.08998 * 109.46862 * 300.00562 * 5 3 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 6 5 3 31 31 H 1.09001 * 109.46832 * 299.99964 * 6 5 3 32 32 H 0.97002 * 119.99768 * 179.97438 * 10 9 7 33 33 H 1.09006 * 111.00445 * 35.21117 * 17 15 2 34 34 H 1.08997 * 111.00464 * 159.05976 * 17 15 2 35 35 H 1.09000 * 110.34750 * 204.16537 * 18 17 15 36 36 H 1.09002 * 110.34966 * 81.86894 * 18 17 15 37 37 H 1.09000 * 109.47352 * 59.99575 * 21 20 19 38 38 H 1.09000 * 109.47611 * 179.97438 * 21 20 19 39 39 H 1.09006 * 109.47411 * 299.99994 * 21 20 19 40 40 H 1.08997 * 109.88368 * 239.52399 * 24 19 18 41 41 H 1.08998 * 110.00599 * 118.43215 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3796 3.6353 -0.0011 7 6 1.6260 4.9404 -0.0023 8 1 0.5461 4.9403 -0.0023 9 6 2.3154 6.1344 -0.0024 10 7 3.6305 6.1344 -0.0020 11 14 1.3814 7.7521 -0.0032 12 1 0.5273 7.8312 1.2091 13 1 2.3464 8.8808 -0.0038 14 1 0.5280 7.8304 -1.2160 15 6 2.1976 -1.2687 0.0006 16 1 3.2730 -1.0914 -0.0120 17 6 1.7722 -2.1487 -1.2044 18 6 0.4815 -2.8171 -0.6550 19 7 0.7627 -3.0686 0.7701 20 16 0.0311 -4.2190 1.7100 21 6 -1.4122 -3.3765 2.4154 22 8 -0.3774 -5.2185 0.7860 23 8 0.9864 -4.5039 2.7226 24 6 1.8000 -2.1282 1.2191 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 0.7584 2.5302 0.8891 29 1 0.7591 2.5298 -0.8908 30 1 3.0063 3.5771 -0.8911 31 1 3.0062 3.5779 0.8889 32 1 4.1155 6.9745 -0.0024 33 1 1.5564 -1.5354 -2.0793 34 1 2.5332 -2.8954 -1.4308 35 1 0.2898 -3.7556 -1.1752 36 1 -0.3687 -2.1432 -0.7606 37 1 -2.0627 -3.0345 1.6104 38 1 -1.9598 -4.0680 3.0556 39 1 -1.0816 -2.5204 3.0037 40 1 2.6673 -2.6790 1.5831 41 1 1.4074 -1.4900 2.0107 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340922101.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:23:00 Heat of formation + Delta-G solvation = -96.617270 kcal Electronic energy + Delta-G solvation = -23568.771600 eV Core-core repulsion = 19997.384805 eV Total energy + Delta-G solvation = -3571.386794 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.22647 -38.14510 -37.45437 -36.28674 -34.57325 -33.53181 -31.37008 -30.38205 -29.79784 -29.31692 -26.64092 -25.67294 -22.84751 -22.34586 -20.55138 -19.29131 -18.67788 -18.09122 -17.39491 -16.82386 -16.46363 -15.98347 -15.59048 -15.44621 -14.71587 -14.40659 -14.15517 -14.04790 -13.60360 -13.52792 -13.31527 -13.05027 -12.77199 -12.65496 -12.45427 -12.36458 -12.33711 -12.18339 -11.93887 -11.68812 -11.49461 -11.33178 -11.25808 -11.15986 -10.94091 -10.63828 -9.99325 -9.66701 -9.37607 -9.22439 -9.04357 -8.54556 -8.34739 -5.98991 -4.03740 -0.15059 2.24574 3.09805 3.12760 3.31773 3.37026 3.38331 3.50704 3.68857 4.12785 4.35980 4.38383 4.44218 4.64074 4.84708 4.99698 5.02845 5.06767 5.14941 5.24602 5.35911 5.38334 5.41909 5.48973 5.62043 5.67925 5.72326 5.77090 5.90920 6.00611 6.15389 6.17203 6.66423 6.83763 7.61899 7.70498 7.82159 8.03604 8.34448 8.64569 9.04405 9.59947 11.11882 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.031525 B = 0.002884 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.979313 B = 9705.660596 C = 9990.101868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.621 5.621 3 C 0.513 3.487 4 O -0.530 6.530 5 C -0.127 4.127 6 C 0.037 3.963 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.059 3.941 10 N -0.889 5.889 11 Si 0.893 3.107 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.131 3.869 16 H 0.120 0.880 17 C -0.136 4.136 18 C 0.107 3.893 19 N -1.014 6.014 20 S 2.628 3.372 21 C -0.675 4.675 22 O -0.954 6.954 23 O -0.952 6.952 24 C 0.110 3.890 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.262 0.738 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.084 0.916 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.561 -20.671 1.315 23.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.357 5.357 3 C 0.304 3.696 4 O -0.404 6.404 5 C -0.167 4.167 6 C -0.001 4.001 7 C -0.567 4.567 8 H 0.073 0.927 9 C -0.143 4.143 10 N -0.528 5.528 11 Si 0.721 3.279 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.025 3.975 16 H 0.138 0.862 17 C -0.176 4.176 18 C -0.018 4.018 19 N -0.853 5.853 20 S 2.722 3.278 21 C -0.824 4.824 22 O -0.945 6.945 23 O -0.942 6.942 24 C -0.016 4.016 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.102 0.898 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.492 -21.470 1.507 23.944 hybrid contribution -1.140 1.513 0.158 1.901 sum -11.633 -19.957 1.664 23.160 Atomic orbital electron populations 1.21916 0.80248 1.03010 1.01768 1.48051 1.06575 1.05300 1.75782 1.21653 0.88470 0.85445 0.74075 1.90669 1.14393 1.87124 1.48254 1.21889 1.00703 0.91804 1.02278 1.18906 0.93172 0.89370 0.98615 1.21168 0.92843 0.91020 1.51678 0.92704 1.25021 0.94822 0.99222 0.95266 1.69982 1.06063 1.26747 1.49966 0.86654 0.79549 0.83189 0.78524 1.20263 1.21277 1.20255 1.21948 0.99124 0.83286 0.93157 0.86183 1.23195 0.97201 0.99006 0.98226 1.22372 0.98532 1.01110 0.79754 1.58653 1.52104 1.53559 1.20935 1.04377 0.75976 0.73541 0.73900 1.30597 1.22158 1.15662 1.14025 1.93603 1.84201 1.54669 1.62025 1.93618 1.57925 1.82718 1.59971 1.22180 0.91115 0.90838 0.97437 0.92634 0.91377 0.90469 0.90271 0.90237 0.95837 0.95843 0.92854 0.89233 0.89449 0.89668 0.90914 0.85326 0.85430 0.85230 0.89754 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 8.32 59.85 0.50 1.16 16 2 N -0.62 -7.87 2.82 -171.84 -0.49 -8.36 16 3 C 0.51 9.21 7.67 -10.99 -0.08 9.13 16 4 O -0.53 -11.76 15.35 5.56 0.09 -11.68 16 5 C -0.13 -2.44 4.19 -27.89 -0.12 -2.55 16 6 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 7 C -0.53 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 11 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 C 0.13 1.45 3.57 -66.09 -0.24 1.21 16 16 H 0.12 1.57 6.99 -51.93 -0.36 1.21 16 17 C -0.14 -1.16 6.58 -24.33 -0.16 -1.32 16 18 C 0.11 0.78 6.21 -2.27 -0.01 0.77 16 19 N -1.01 -8.22 3.18 -111.14 -0.35 -8.57 16 20 S 2.63 21.40 6.29 -107.50 -0.68 20.72 16 21 C -0.67 -3.07 10.99 101.05 1.11 -1.96 16 22 O -0.95 -10.52 17.28 -57.54 -0.99 -11.51 16 23 O -0.95 -11.24 17.60 -57.54 -1.01 -12.26 16 24 C 0.11 1.05 5.86 -3.06 -0.02 1.03 16 25 H 0.06 0.43 7.95 -51.93 -0.41 0.02 16 26 H 0.07 0.45 5.24 -51.93 -0.27 0.18 16 27 H 0.08 0.71 6.44 -51.93 -0.33 0.37 16 28 H 0.08 1.38 7.40 -51.93 -0.38 0.99 16 29 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 30 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.60 7.67 -51.93 -0.40 0.20 16 36 H 0.07 0.41 5.57 -51.93 -0.29 0.12 16 37 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 38 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16 39 H 0.13 0.51 8.14 -51.92 -0.42 0.09 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.66 8.04 -51.93 -0.42 0.24 16 LS Contribution 343.42 15.07 5.18 5.18 Total: -1.00 -37.69 343.42 -8.31 -46.00 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -6.21 Total: -4.42 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 0.45 Total: -5.07 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.10 Total: -43.21 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -1.92 Total: -35.44 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 21.40 SS G_CDS: -0.68 Total: 20.72 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.69 -8.31 -46.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340922101.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.616 kcal (2) G-P(sol) polarization free energy of solvation -37.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds