Wall clock time and date at job start Fri Apr 10 2020 14:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 119.99736 * 2 1 4 4 O 1.21282 * 119.99620 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00369 * 359.97438 * 3 2 1 6 6 C 1.52997 * 109.47466 * 180.02562 * 5 3 2 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 3 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47294 * 60.00559 * 11 9 7 13 13 H 1.48503 * 109.46954 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47431 * 300.00157 * 11 9 7 15 15 C 1.46505 * 120.00149 * 179.97438 * 2 1 3 16 16 H 1.08998 * 110.63664 * 179.30104 * 15 2 1 17 17 C 1.55154 * 110.71852 * 56.15881 * 15 2 1 18 18 C 1.55382 * 101.36804 * 277.04358 * 17 15 2 19 19 N 1.47421 * 104.87659 * 323.01773 * 18 17 15 20 20 S 1.65594 * 125.65370 * 204.09997 * 19 18 17 21 21 C 1.81400 * 104.45004 * 270.03933 * 20 19 18 22 22 O 1.42102 * 104.27793 * 26.10700 * 20 19 18 23 23 O 1.42099 * 104.28295 * 153.96813 * 20 19 18 24 24 C 1.47031 * 108.70171 * 24.13103 * 19 18 17 25 25 H 1.08996 * 109.46784 * 90.00263 * 1 2 3 26 26 H 1.09003 * 109.47146 * 209.99886 * 1 2 3 27 27 H 1.08994 * 109.47096 * 330.00470 * 1 2 3 28 28 H 1.09002 * 109.47120 * 59.99760 * 5 3 2 29 29 H 1.08998 * 109.46862 * 300.00562 * 5 3 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 6 5 3 31 31 H 1.09001 * 109.46832 * 299.99964 * 6 5 3 32 32 H 0.97002 * 119.99768 * 179.97438 * 10 9 7 33 33 H 1.09006 * 111.00445 * 35.21117 * 17 15 2 34 34 H 1.08997 * 111.00464 * 159.05976 * 17 15 2 35 35 H 1.09000 * 110.34750 * 204.16537 * 18 17 15 36 36 H 1.09002 * 110.34966 * 81.86894 * 18 17 15 37 37 H 1.09000 * 109.47352 * 59.99575 * 21 20 19 38 38 H 1.09000 * 109.47611 * 179.97438 * 21 20 19 39 39 H 1.09006 * 109.47411 * 299.99994 * 21 20 19 40 40 H 1.08997 * 109.88368 * 239.52399 * 24 19 18 41 41 H 1.08998 * 110.00599 * 118.43215 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3796 3.6353 -0.0011 7 6 1.6260 4.9404 -0.0023 8 1 0.5461 4.9403 -0.0023 9 6 2.3154 6.1344 -0.0024 10 7 3.6305 6.1344 -0.0020 11 14 1.3814 7.7521 -0.0032 12 1 0.5273 7.8312 1.2091 13 1 2.3464 8.8808 -0.0038 14 1 0.5280 7.8304 -1.2160 15 6 2.1976 -1.2687 0.0006 16 1 3.2730 -1.0914 -0.0120 17 6 1.7722 -2.1487 -1.2044 18 6 0.4815 -2.8171 -0.6550 19 7 0.7627 -3.0686 0.7701 20 16 0.0311 -4.2190 1.7100 21 6 -1.4122 -3.3765 2.4154 22 8 -0.3774 -5.2185 0.7860 23 8 0.9864 -4.5039 2.7226 24 6 1.8000 -2.1282 1.2191 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 0.7584 2.5302 0.8891 29 1 0.7591 2.5298 -0.8908 30 1 3.0063 3.5771 -0.8911 31 1 3.0062 3.5779 0.8889 32 1 4.1155 6.9745 -0.0024 33 1 1.5564 -1.5354 -2.0793 34 1 2.5332 -2.8954 -1.4308 35 1 0.2898 -3.7556 -1.1752 36 1 -0.3687 -2.1432 -0.7606 37 1 -2.0627 -3.0345 1.6104 38 1 -1.9598 -4.0680 3.0556 39 1 -1.0816 -2.5204 3.0037 40 1 2.6673 -2.6790 1.5831 41 1 1.4074 -1.4900 2.0107 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340922101.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:59 Heat of formation + Delta-G solvation = -126.146856 kcal Electronic energy + Delta-G solvation = -23570.052099 eV Core-core repulsion = 19997.384805 eV Total energy + Delta-G solvation = -3572.667293 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.31126 -39.25851 -38.19897 -37.03315 -35.66018 -35.55330 -33.05143 -31.35491 -30.22627 -30.10612 -27.88650 -27.21249 -24.12789 -23.39498 -21.81988 -20.02825 -19.81273 -18.91120 -18.69648 -18.06483 -17.34840 -17.12184 -16.71815 -16.57488 -16.45624 -15.55457 -15.08962 -14.93290 -14.47451 -14.22587 -14.14519 -13.96798 -13.90600 -13.74747 -13.50308 -13.39663 -13.22134 -13.12532 -13.10732 -12.82794 -12.72058 -12.53424 -12.48085 -12.21940 -12.05404 -11.93933 -11.86841 -11.53954 -11.29200 -10.59483 -10.53707 -10.01618 -9.58211 -8.15819 -6.29820 -0.74616 1.43837 1.48047 1.55720 1.61791 1.71595 2.04464 2.45075 2.94659 3.05401 3.17372 3.40787 3.71249 3.91763 4.06142 4.09228 4.22995 4.26810 4.35248 4.41325 4.51029 4.52851 4.57092 4.76515 4.79354 4.85400 4.95945 4.98797 5.03044 5.08098 5.10482 5.20011 5.32179 5.51550 5.66267 5.70947 5.88169 6.19828 6.42181 6.89208 7.30302 7.40718 8.96620 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.031525 B = 0.002884 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.979313 B = 9705.660596 C = 9990.101868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.604 5.604 3 C 0.511 3.489 4 O -0.589 6.589 5 C -0.114 4.114 6 C 0.042 3.958 7 C -0.542 4.542 8 H 0.077 0.923 9 C -0.007 4.007 10 N -0.939 5.939 11 Si 0.973 3.027 12 H -0.262 1.262 13 H -0.290 1.290 14 H -0.262 1.262 15 C 0.123 3.877 16 H 0.090 0.910 17 C -0.131 4.131 18 C 0.107 3.893 19 N -1.014 6.014 20 S 2.632 3.368 21 C -0.651 4.651 22 O -0.988 6.988 23 O -0.998 6.998 24 C 0.117 3.883 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.103 0.897 30 H -0.020 1.020 31 H -0.020 1.020 32 H 0.262 0.738 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.154 0.846 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.076 0.924 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.809 -20.754 1.417 26.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.337 5.337 3 C 0.301 3.699 4 O -0.468 6.468 5 C -0.153 4.153 6 C 0.004 3.996 7 C -0.580 4.580 8 H 0.095 0.905 9 C -0.205 4.205 10 N -0.579 5.579 11 Si 0.797 3.203 12 H -0.186 1.186 13 H -0.216 1.216 14 H -0.186 1.186 15 C 0.018 3.982 16 H 0.108 0.892 17 C -0.171 4.171 18 C -0.017 4.017 19 N -0.852 5.852 20 S 2.731 3.269 21 C -0.805 4.805 22 O -0.979 6.979 23 O -0.989 6.989 24 C -0.010 4.010 25 H 0.096 0.904 26 H 0.116 0.884 27 H 0.100 0.900 28 H 0.123 0.877 29 H 0.122 0.878 30 H -0.001 1.001 31 H -0.001 1.001 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.173 0.827 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.094 0.906 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.778 -21.631 1.584 26.245 hybrid contribution 0.144 1.460 0.141 1.473 sum -14.634 -20.171 1.725 24.980 Atomic orbital electron populations 1.22333 0.77243 1.04837 1.03812 1.47919 1.08310 1.04124 1.73371 1.21404 0.87635 0.86690 0.74129 1.90654 1.16760 1.87999 1.51423 1.21627 0.99169 0.89955 1.04580 1.18694 0.93752 0.92588 0.94544 1.21696 0.94023 0.91571 1.50702 0.90453 1.26136 0.95680 1.03951 0.94712 1.70174 1.08357 1.27814 1.51517 0.85391 0.78044 0.77391 0.79508 1.18625 1.21611 1.18630 1.22013 0.97621 0.83030 0.95577 0.89158 1.23169 0.98207 0.98553 0.97154 1.22502 0.98338 1.01819 0.79052 1.58514 1.52278 1.52972 1.21474 1.04065 0.76551 0.73365 0.72968 1.30379 1.19299 1.15809 1.14985 1.93559 1.84660 1.56568 1.63079 1.93562 1.60599 1.83761 1.60928 1.21996 0.91520 0.90756 0.96691 0.90430 0.88359 0.89971 0.87747 0.87842 1.00144 1.00127 0.92932 0.88914 0.89212 0.89214 0.88249 0.82718 0.83658 0.83761 0.90614 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.82 8.32 127.77 1.06 1.88 16 2 N -0.60 -14.45 2.82 -815.96 -2.30 -16.75 16 3 C 0.51 18.55 7.67 87.66 0.67 19.22 16 4 O -0.59 -27.81 15.35 -3.04 -0.05 -27.85 16 5 C -0.11 -4.29 4.19 29.85 0.13 -4.16 16 6 C 0.04 2.27 4.26 29.85 0.13 2.40 16 7 C -0.54 -30.05 9.11 25.60 0.23 -29.82 16 8 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 9 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 10 N -0.94 -59.05 13.29 21.45 0.28 -58.76 16 11 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 12 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 13 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 14 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 15 C 0.12 2.68 3.57 46.18 0.16 2.84 16 16 H 0.09 2.54 6.99 -2.39 -0.02 2.52 16 17 C -0.13 -2.06 6.58 32.15 0.21 -1.84 16 18 C 0.11 1.25 6.21 87.02 0.54 1.79 16 19 N -1.01 -14.23 3.18 -505.53 -1.61 -15.84 16 20 S 2.63 37.73 6.29 -56.49 -0.36 37.38 16 21 C -0.65 -2.92 10.99 113.37 1.25 -1.67 16 22 O -0.99 -20.28 17.28 -127.65 -2.21 -22.49 16 23 O -1.00 -23.09 17.60 -127.65 -2.25 -25.33 16 24 C 0.12 2.10 5.86 86.73 0.51 2.61 16 25 H 0.08 0.83 7.95 -2.39 -0.02 0.81 16 26 H 0.10 0.80 5.24 -2.39 -0.01 0.78 16 27 H 0.08 1.13 6.44 -2.39 -0.02 1.12 16 28 H 0.10 3.39 7.40 -2.39 -0.02 3.38 16 29 H 0.10 3.39 8.11 -2.39 -0.02 3.37 16 30 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 31 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 32 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 33 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.03 7.67 -2.39 -0.02 1.01 16 36 H 0.10 0.64 5.57 -2.39 -0.01 0.63 16 37 H 0.15 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.15 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.14 0.39 8.14 -2.39 -0.02 0.38 16 40 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.32 8.04 -2.39 -0.02 1.31 16 Total: -1.00 -87.76 343.42 -0.08 -87.84 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: 1.02 Total: 3.13 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 5.36 Total: -6.71 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -3.63 Total: -91.36 kcal Atomic # 8 Polarization: -71.17 SS G_CDS: -4.50 Total: -75.67 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 37.73 SS G_CDS: -0.36 Total: 37.38 kcal Total: -87.76 -0.08 -87.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340922101.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.308 kcal (2) G-P(sol) polarization free energy of solvation -87.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds