Wall clock time and date at job start Fri Apr 10 2020 14:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 120.00292 * 2 1 4 4 C 1.50706 * 109.47106 * 274.99607 * 3 2 1 5 5 O 1.21279 * 119.99507 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00020 * 179.97438 * 4 3 2 7 7 C 1.46923 * 120.63150 * 359.72421 * 6 4 3 8 8 C 1.52767 * 109.00740 * 233.58251 * 7 6 4 9 9 C 1.53040 * 109.38405 * 305.58916 * 8 7 6 10 10 C 1.50696 * 109.44959 * 181.25180 * 9 8 7 11 11 H 1.08001 * 119.99940 * 239.93934 * 10 9 8 12 12 C 1.37882 * 119.99769 * 59.93648 * 10 9 8 13 13 N 1.31505 * 119.99882 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99734 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47591 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47228 * 120.00182 * 14 12 10 17 17 H 1.48499 * 109.47312 * 240.00060 * 14 12 10 18 18 C 1.53038 * 109.53948 * 61.23711 * 9 8 7 19 19 C 1.46923 * 120.62774 * 179.97438 * 6 4 3 20 20 S 1.65605 * 119.99780 * 179.97438 * 2 1 3 21 21 C 1.81394 * 104.45063 * 270.00341 * 20 2 1 22 22 O 1.42105 * 104.27629 * 26.07514 * 20 2 1 23 23 O 1.42097 * 104.27682 * 153.92653 * 20 2 1 24 24 H 1.08998 * 109.47053 * 90.00168 * 1 2 3 25 25 H 1.08998 * 109.47605 * 210.00645 * 1 2 3 26 26 H 1.09001 * 109.46791 * 330.00696 * 1 2 3 27 27 H 1.09001 * 109.47001 * 154.99897 * 3 2 1 28 28 H 1.09000 * 109.47574 * 35.00113 * 3 2 1 29 29 H 1.08997 * 109.58651 * 353.41526 * 7 6 4 30 30 H 1.08992 * 109.58942 * 113.84358 * 7 6 4 31 31 H 1.08998 * 109.56180 * 185.54829 * 8 7 6 32 32 H 1.09003 * 109.35696 * 65.49583 * 8 7 6 33 33 H 1.09003 * 109.45867 * 301.21821 * 9 8 7 34 34 H 0.97006 * 119.99863 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.50221 * 178.68216 * 18 9 8 36 36 H 1.09001 * 109.52295 * 58.59924 * 18 9 8 37 37 H 1.08995 * 109.59333 * 246.15278 * 19 6 4 38 38 H 1.08998 * 109.59019 * 6.44429 * 19 6 4 39 39 H 1.08997 * 109.47292 * 59.99828 * 21 20 2 40 40 H 1.09000 * 109.47163 * 179.97438 * 21 20 2 41 41 H 1.09006 * 109.47141 * 299.99775 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3416 1.7656 -1.4155 5 8 1.8775 1.1234 -2.3337 6 7 2.9851 2.9240 -1.6608 7 6 3.5463 3.7166 -0.5583 8 6 3.0144 5.1456 -0.6517 9 6 3.3099 5.7075 -2.0442 10 6 2.8131 7.1278 -2.1280 11 1 2.0669 7.3965 -2.8610 12 6 3.3113 8.0842 -1.2687 13 7 4.2202 7.7570 -0.3765 14 14 2.6960 9.8448 -1.3730 15 1 1.6822 9.9519 -2.4529 16 1 2.0815 10.2320 -0.0777 17 1 3.8347 10.7503 -1.6709 18 6 2.6014 4.8565 -3.1005 19 6 3.1340 3.4211 -3.0353 20 16 2.2930 -1.4342 0.0006 21 6 2.5192 -1.8255 1.7574 22 8 1.3969 -2.3564 -0.6043 23 8 3.5394 -1.1195 -0.6048 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5137 27 1 3.1858 1.1175 0.4343 28 1 1.6503 2.0043 0.5894 29 1 3.2488 3.2791 0.3946 30 1 4.6336 3.7288 -0.6335 31 1 3.5001 5.7658 0.1016 32 1 1.9377 5.1422 -0.4818 33 1 4.3849 5.6877 -2.2232 34 1 4.5710 8.4299 0.2278 35 1 2.7931 5.2710 -4.0903 36 1 1.5285 4.8557 -2.9080 37 1 4.1870 3.4088 -3.3164 38 1 2.5666 2.7871 -3.7167 39 1 1.5450 -1.9178 2.2374 40 1 3.0617 -2.7661 1.8532 41 1 3.0865 -1.0279 2.2372 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541050501.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:31 Heat of formation + Delta-G solvation = -125.583739 kcal Electronic energy + Delta-G solvation = -24029.850072 eV Core-core repulsion = 20457.207197 eV Total energy + Delta-G solvation = -3572.642875 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.11812 -38.56123 -38.18155 -37.00622 -36.64336 -35.30445 -33.14905 -31.78228 -30.27809 -29.73480 -27.89021 -26.15890 -24.52758 -23.79121 -21.64536 -20.20175 -19.57475 -18.73672 -18.56357 -18.03093 -17.43554 -17.18437 -16.59835 -16.41329 -16.23677 -15.32889 -15.07776 -14.84650 -14.65798 -14.44553 -14.24322 -13.97249 -13.94073 -13.77605 -13.68383 -13.30081 -13.21537 -13.13974 -13.07105 -12.81059 -12.59911 -12.49918 -12.40634 -12.13137 -11.91273 -11.89357 -11.45639 -11.18766 -10.98900 -10.77783 -10.37842 -9.92185 -9.50499 -8.05816 -6.18381 -0.72865 1.41711 1.45718 1.55161 1.59493 1.68348 2.16456 2.46180 3.04739 3.15959 3.20919 3.58672 3.67218 4.10767 4.13312 4.21600 4.26458 4.29427 4.38191 4.46638 4.54752 4.58799 4.68867 4.77775 4.87402 4.92280 5.01297 5.01478 5.09113 5.21045 5.28675 5.43067 5.46422 5.60623 5.69090 6.02220 6.18536 6.42352 6.57112 6.90530 7.23324 7.49164 8.97735 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.032039 B = 0.003348 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.723022 B = 8361.244761 C = 8560.352192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.988 5.988 3 C 0.106 3.894 4 C 0.485 3.515 5 O -0.587 6.587 6 N -0.605 5.605 7 C 0.110 3.890 8 C -0.115 4.115 9 C 0.044 3.956 10 C -0.534 4.534 11 H 0.044 0.956 12 C 0.021 3.979 13 N -0.909 5.909 14 Si 0.947 3.053 15 H -0.275 1.275 16 H -0.278 1.278 17 H -0.283 1.283 18 C -0.110 4.110 19 C 0.116 3.884 20 S 2.596 3.404 21 C -0.637 4.637 22 O -0.998 6.998 23 O -0.998 6.998 24 H 0.028 0.972 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.136 0.864 28 H 0.147 0.853 29 H 0.114 0.886 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.034 0.966 33 H 0.001 0.999 34 H 0.262 0.738 35 H 0.058 0.942 36 H 0.043 0.957 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.156 0.844 40 H 0.146 0.854 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.908 -15.934 11.229 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.824 5.824 3 C -0.023 4.023 4 C 0.273 3.727 5 O -0.468 6.468 6 N -0.338 5.338 7 C -0.012 4.012 8 C -0.154 4.154 9 C 0.025 3.975 10 C -0.572 4.572 11 H 0.062 0.938 12 C -0.178 4.178 13 N -0.549 5.549 14 Si 0.774 3.226 15 H -0.200 1.200 16 H -0.203 1.203 17 H -0.209 1.209 18 C -0.149 4.149 19 C -0.008 4.008 20 S 2.695 3.305 21 C -0.792 4.792 22 O -0.988 6.988 23 O -0.989 6.989 24 H 0.047 0.953 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.154 0.846 28 H 0.165 0.835 29 H 0.132 0.868 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.020 0.980 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.174 0.826 40 H 0.164 0.836 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.802 -16.657 10.099 19.847 hybrid contribution -0.214 1.502 -0.112 1.521 sum -4.016 -15.155 9.988 18.590 Atomic orbital electron populations 1.21623 0.77093 1.04951 1.01709 1.57040 1.15943 1.19703 1.89685 1.21446 1.00726 0.87797 0.92300 1.22054 0.76844 0.80111 0.93707 1.90627 1.50481 1.57714 1.47976 1.48344 1.55350 1.21709 1.08417 1.21948 0.98253 0.91808 0.89155 1.21716 0.98898 0.93786 1.00975 1.18625 0.94209 0.92636 0.92021 1.21547 1.23153 0.95188 1.17352 0.93788 1.25571 0.95132 1.01949 0.95158 1.69935 1.29460 1.34609 1.20866 0.85682 0.78119 0.80952 0.77896 1.20004 1.20328 1.20878 1.21837 0.99246 0.93740 1.00043 1.21525 1.00679 0.94968 0.83583 1.05163 0.72657 0.72706 0.79991 1.30283 1.14236 1.13885 1.20776 1.93539 1.65400 1.63562 1.76349 1.93567 1.45796 1.83187 1.76311 0.95271 0.88585 0.88435 0.84613 0.83526 0.86845 0.91620 0.89823 0.94722 0.98042 0.92871 0.92379 0.93854 0.91774 0.90974 0.82556 0.83571 0.82564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.58 10.22 127.77 1.31 2.89 16 2 N -0.99 -20.00 2.61 -543.23 -1.42 -21.42 16 3 C 0.11 2.22 4.11 85.64 0.35 2.57 16 4 C 0.48 16.26 7.76 87.66 0.68 16.94 16 5 O -0.59 -24.64 15.83 -3.02 -0.05 -24.69 16 6 N -0.61 -20.93 2.98 -819.66 -2.44 -23.37 16 7 C 0.11 3.45 6.31 86.22 0.54 4.00 16 8 C -0.12 -4.73 5.14 30.53 0.16 -4.58 16 9 C 0.04 2.06 2.07 -11.51 -0.02 2.03 16 10 C -0.53 -28.33 8.56 25.60 0.22 -28.11 16 11 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 12 C 0.02 1.10 5.30 84.66 0.45 1.55 16 13 N -0.91 -48.52 11.31 21.45 0.24 -48.28 16 14 Si 0.95 41.91 29.54 68.60 2.03 43.93 16 15 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 18 C -0.11 -4.59 5.30 30.69 0.16 -4.42 16 19 C 0.12 4.37 6.44 86.38 0.56 4.92 16 20 S 2.60 53.89 5.96 -56.49 -0.34 53.56 16 21 C -0.64 -4.02 10.99 113.37 1.25 -2.77 16 22 O -1.00 -28.53 17.09 -127.65 -2.18 -30.71 16 23 O -1.00 -29.83 16.99 -127.65 -2.17 -32.00 16 24 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.10 1.12 7.79 -2.39 -0.02 1.10 16 26 H 0.10 1.17 7.94 -2.39 -0.02 1.15 16 27 H 0.14 2.09 7.42 -2.39 -0.02 2.07 16 28 H 0.15 2.03 7.50 -2.39 -0.02 2.01 16 29 H 0.11 2.46 5.93 -2.39 -0.01 2.44 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.08 3.85 6.03 -2.39 -0.01 3.83 16 32 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.00 0.07 8.14 -2.39 -0.02 0.06 16 34 H 0.26 13.29 8.31 -92.70 -0.77 12.52 16 35 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.07 2.81 7.00 -2.39 -0.02 2.79 16 39 H 0.16 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.15 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.16 0.33 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -80.51 342.91 0.34 -80.17 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.01 Total: 7.77 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 5.65 Total: -4.97 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -3.61 Total: -93.06 kcal Atomic # 8 Polarization: -83.00 SS G_CDS: -4.40 Total: -87.40 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 53.89 SS G_CDS: -0.34 Total: 53.56 kcal Total: -80.51 0.34 -80.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541050501.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.417 kcal (2) G-P(sol) polarization free energy of solvation -80.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds