Wall clock time and date at job start Fri Apr 10 2020 14:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46505 * 119.99594 * 2 1 4 4 C 1.50703 * 109.47064 * 85.00244 * 3 2 1 5 5 O 1.21278 * 119.99985 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00161 * 180.02562 * 4 3 2 7 7 C 1.46927 * 120.62638 * 359.71455 * 6 4 3 8 8 C 1.52765 * 109.00862 * 233.58544 * 7 6 4 9 9 C 1.53035 * 109.38268 * 305.59133 * 8 7 6 10 10 C 1.53043 * 109.53810 * 61.23936 * 9 8 7 11 11 H 1.09005 * 109.49595 * 58.58664 * 10 9 8 12 12 C 1.50705 * 109.52169 * 178.66288 * 10 9 8 13 13 H 1.08001 * 120.00144 * 359.86034 * 12 10 9 14 14 C 1.37879 * 119.99687 * 179.85059 * 12 10 9 15 15 N 1.31514 * 120.00119 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 119.99895 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46810 * 90.00529 * 16 14 12 18 18 H 1.48500 * 109.47291 * 210.00330 * 16 14 12 19 19 H 1.48496 * 109.47506 * 330.00776 * 16 14 12 20 20 C 1.46920 * 120.63268 * 180.02562 * 6 4 3 21 21 S 1.65591 * 120.00456 * 180.02562 * 2 1 3 22 22 C 1.81403 * 104.45164 * 269.99901 * 21 2 1 23 23 O 1.42105 * 104.27572 * 26.07201 * 21 2 1 24 24 O 1.42101 * 104.28133 * 153.92825 * 21 2 1 25 25 H 1.08995 * 109.47255 * 89.99936 * 1 2 3 26 26 H 1.09001 * 109.46791 * 209.99964 * 1 2 3 27 27 H 1.09001 * 109.47612 * 329.99853 * 1 2 3 28 28 H 1.09002 * 109.47068 * 205.00213 * 3 2 1 29 29 H 1.09001 * 109.47372 * 325.00300 * 3 2 1 30 30 H 1.09000 * 109.59185 * 353.42700 * 7 6 4 31 31 H 1.09004 * 109.58365 * 113.84987 * 7 6 4 32 32 H 1.09003 * 109.56176 * 185.55325 * 8 7 6 33 33 H 1.09000 * 109.36023 * 65.50261 * 8 7 6 34 34 H 1.09007 * 109.46249 * 301.21815 * 9 8 7 35 35 H 1.09002 * 109.44787 * 181.25329 * 9 8 7 36 36 H 0.97002 * 119.99899 * 180.02562 * 15 14 12 37 37 H 1.09006 * 109.58607 * 246.15487 * 20 6 4 38 38 H 1.08997 * 109.58881 * 6.42852 * 20 6 4 39 39 H 1.08999 * 109.46458 * 59.99892 * 22 21 2 40 40 H 1.08998 * 109.47098 * 179.97438 * 22 21 2 41 41 H 1.08999 * 109.46945 * 300.00254 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3413 1.7657 1.4154 5 8 1.8774 1.1236 2.3337 6 7 2.9848 2.9243 1.6608 7 6 3.5566 3.7107 0.5593 8 6 5.0305 3.9828 0.8549 9 6 5.1595 4.6407 2.2306 10 6 4.6165 3.6941 3.3036 11 1 5.1699 2.7555 3.2745 12 6 4.7738 4.3289 4.6614 13 1 5.2190 5.3088 4.7512 14 6 4.3493 3.6586 5.7890 15 7 3.8075 2.4652 5.6798 16 14 4.5449 4.4449 7.4721 17 1 3.3319 5.2402 7.7908 18 1 4.7247 3.3846 8.4961 19 1 5.7333 5.3353 7.4675 20 6 3.1336 3.4214 3.0353 21 16 2.2930 -1.4340 -0.0006 22 6 2.5195 -1.8268 1.7558 23 8 1.3970 -2.3558 -0.6063 24 8 3.5395 -1.1187 -0.6057 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 3.1857 1.1179 -0.4344 29 1 1.6500 2.0044 -0.5894 30 1 3.4693 3.1520 -0.3725 31 1 3.0237 4.6576 0.4713 32 1 5.4387 4.6477 0.0938 33 1 5.5799 3.0414 0.8489 34 1 4.5895 5.5698 2.2438 35 1 6.2088 4.8556 2.4331 36 1 3.5085 1.9938 6.4731 37 1 2.5654 4.3441 3.1537 38 1 2.7649 2.6729 3.7366 39 1 1.5452 -1.9197 2.2358 40 1 3.0620 -2.7674 1.8508 41 1 3.0867 -1.0296 2.2362 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597914846.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:21:35 Heat of formation + Delta-G solvation = -101.297651 kcal Electronic energy + Delta-G solvation = -24513.703028 eV Core-core repulsion = 20942.113277 eV Total energy + Delta-G solvation = -3571.589751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.64705 -37.17304 -37.05000 -36.00546 -35.44923 -33.46845 -31.86104 -30.04727 -29.26001 -28.62521 -25.63942 -25.04378 -23.88033 -21.86915 -20.10865 -18.90568 -18.28407 -17.72840 -17.09171 -16.40994 -16.23163 -15.92561 -15.18101 -14.74401 -14.61431 -14.22474 -13.76581 -13.73787 -13.36423 -13.24572 -12.94254 -12.74704 -12.68381 -12.56433 -12.46439 -12.08643 -12.07002 -11.95265 -11.60777 -11.42900 -11.05841 -10.99311 -10.94119 -10.56475 -10.43410 -10.29095 -9.95128 -9.82141 -9.18505 -9.14636 -8.67463 -8.48808 -7.83382 -6.05997 -4.14134 0.31684 2.52360 3.07065 3.26505 3.34283 3.36479 3.62539 3.87595 4.18889 4.38042 4.58052 4.84965 5.00395 5.12916 5.22604 5.25408 5.27896 5.34952 5.45766 5.54301 5.63310 5.74047 5.85348 5.95211 6.03156 6.12302 6.26714 6.36259 6.56768 6.61448 6.80439 6.91996 7.07684 7.19538 7.57684 7.81327 7.93245 8.15795 8.32817 8.72286 8.90079 9.51689 10.99324 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.019651 B = 0.004505 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.521501 B = 6214.001126 C = 6908.070806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.983 5.983 3 C 0.094 3.906 4 C 0.480 3.520 5 O -0.533 6.533 6 N -0.602 5.602 7 C 0.106 3.894 8 C -0.136 4.136 9 C -0.111 4.111 10 C 0.039 3.961 11 H 0.029 0.971 12 C -0.520 4.520 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.882 5.882 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.112 3.888 21 S 2.612 3.388 22 C -0.659 4.659 23 O -0.962 6.962 24 O -0.960 6.960 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.120 0.880 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.263 0.737 37 H 0.042 0.958 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.533 -2.849 -12.390 13.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.819 5.819 3 C -0.035 4.035 4 C 0.265 3.735 5 O -0.411 6.411 6 N -0.336 5.336 7 C -0.018 4.018 8 C -0.174 4.174 9 C -0.149 4.149 10 C 0.020 3.980 11 H 0.047 0.953 12 C -0.559 4.559 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.519 5.519 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.009 4.009 21 S 2.705 3.295 22 C -0.810 4.810 23 O -0.952 6.952 24 O -0.951 6.951 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.138 0.862 29 H 0.126 0.874 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.139 0.861 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.619 -3.808 -12.550 13.904 hybrid contribution 0.028 0.730 1.772 1.917 sum -4.592 -3.077 -10.778 12.112 Atomic orbital electron populations 1.21406 0.77869 1.03439 1.01624 1.57039 1.15309 1.20151 1.89369 1.21391 0.99503 0.86823 0.95795 1.21108 0.79317 0.81732 0.91365 1.90689 1.48430 1.56103 1.45854 1.48566 1.53661 1.21487 1.09853 1.21620 0.94985 0.95909 0.89301 1.21888 0.95261 1.01234 0.99046 1.21626 1.00584 0.99058 0.93595 1.18971 0.91367 0.94981 0.92702 0.95298 1.21088 1.40828 1.03426 0.90516 0.92358 1.25041 0.94942 0.94777 0.99232 1.69876 1.40272 1.12331 1.29467 0.86586 0.78480 0.78988 0.83907 1.20661 1.21232 1.19910 1.22300 0.99945 0.99687 0.78925 1.04834 0.73688 0.73062 0.77886 1.30431 1.12290 1.11889 1.26352 1.93583 1.64810 1.62430 1.74392 1.93577 1.44069 1.82970 1.74482 0.92403 0.91140 0.90890 0.86237 0.87415 0.91006 0.91759 0.91990 0.91927 0.93171 0.92964 0.92712 0.93972 0.85887 0.85289 0.86137 0.84274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.09 10.20 59.85 0.61 1.70 16 2 N -0.98 -12.53 2.61 -123.05 -0.32 -12.85 16 3 C 0.09 1.22 4.47 -5.19 -0.02 1.19 16 4 C 0.48 8.40 7.76 -10.98 -0.09 8.31 16 5 O -0.53 -11.05 14.43 5.56 0.08 -10.97 16 6 N -0.60 -10.95 2.98 -173.06 -0.52 -11.47 16 7 C 0.11 1.47 6.31 -3.93 -0.02 1.45 16 8 C -0.14 -2.05 6.06 -26.83 -0.16 -2.21 16 9 C -0.11 -2.10 5.11 -26.69 -0.14 -2.23 16 10 C 0.04 0.92 2.25 -91.67 -0.21 0.71 16 11 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 12 C -0.52 -13.64 8.57 -34.44 -0.29 -13.94 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 15 N -0.88 -24.82 11.39 55.43 0.63 -24.19 16 16 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 C 0.11 2.54 5.40 -3.74 -0.02 2.52 16 21 S 2.61 34.97 6.02 -107.50 -0.65 34.33 16 22 C -0.66 -8.41 10.53 101.05 1.06 -7.35 16 23 O -0.96 -14.40 17.09 -57.54 -0.98 -15.38 16 24 O -0.96 -15.19 16.53 -57.54 -0.95 -16.14 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.70 7.79 -51.93 -0.40 0.29 16 27 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 28 H 0.12 1.48 6.36 -51.93 -0.33 1.15 16 29 H 0.11 1.05 7.92 -51.93 -0.41 0.64 16 30 H 0.07 0.77 5.93 -51.93 -0.31 0.46 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.12 3.28 5.12 -51.93 -0.27 3.01 16 39 H 0.13 1.53 8.14 -51.92 -0.42 1.11 16 40 H 0.12 1.24 8.14 -51.92 -0.42 0.82 16 41 H 0.14 2.14 7.22 -51.92 -0.37 1.76 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -33.21 339.76 -8.26 -41.47 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.28 Total: 2.58 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 0.63 Total: -8.25 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.20 Total: -48.50 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -1.85 Total: -42.50 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 34.97 SS G_CDS: -0.65 Total: 34.33 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.21 -8.26 -41.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597914846.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.823 kcal (2) G-P(sol) polarization free energy of solvation -33.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds