Wall clock time and date at job start Fri Apr 10 2020 14:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34776 * 120.00461 * 2 1 4 4 O 1.21578 * 120.00211 * 179.97438 * 3 2 1 5 5 N 1.34779 * 119.99609 * 359.97438 * 3 2 1 6 6 C 1.39459 * 119.99959 * 185.24201 * 5 3 2 7 7 C 1.38643 * 119.65154 * 174.62856 * 6 5 3 8 8 C 1.40822 * 118.67713 * 180.24794 * 7 6 5 9 9 C 1.41544 * 120.99779 * 179.74770 * 8 7 6 10 10 H 1.08003 * 119.99891 * 18.62778 * 9 8 7 11 11 C 1.40028 * 120.00212 * 198.61655 * 9 8 7 12 12 N 1.30752 * 119.99313 * 35.15371 * 11 9 8 13 13 Si 1.86796 * 120.00216 * 215.15339 * 11 9 8 14 14 H 1.48506 * 109.47073 * 179.97438 * 13 11 9 15 15 H 1.48497 * 109.46920 * 60.00507 * 13 11 9 16 16 H 1.48494 * 109.46995 * 300.00032 * 13 11 9 17 17 C 1.41159 * 118.00126 * 359.48203 * 8 7 6 18 18 C 1.36589 * 119.13407 * 0.27345 * 17 8 7 19 19 N 1.32072 * 121.25310 * 359.97438 * 18 17 8 20 20 C 1.46504 * 119.99742 * 180.02562 * 2 1 3 21 21 H 1.09007 * 110.43368 * 179.29631 * 20 2 1 22 22 C 1.54618 * 110.48685 * 301.83923 * 20 2 1 23 23 C 1.54481 * 101.76716 * 143.47838 * 22 20 2 24 24 N 1.46765 * 105.46906 * 334.58430 * 23 22 20 25 25 C 1.34652 * 111.33766 * 17.13018 * 24 23 22 26 26 O 1.21280 * 125.07378 * 179.54422 * 25 24 23 27 27 H 1.09002 * 109.47746 * 89.99597 * 1 2 3 28 28 H 1.09005 * 109.47370 * 210.00048 * 1 2 3 29 29 H 1.09007 * 109.47281 * 329.99771 * 1 2 3 30 30 H 0.97001 * 120.00141 * 5.25051 * 5 3 2 31 31 H 1.08004 * 120.65995 * 0.02562 * 7 6 5 32 32 H 0.96991 * 120.00532 * 5.91944 * 12 11 9 33 33 H 1.08002 * 120.43635 * 180.29294 * 17 8 7 34 34 H 1.07993 * 119.37408 * 180.02562 * 18 17 8 35 35 H 1.09007 * 110.97070 * 261.59247 * 22 20 2 36 36 H 1.08999 * 110.97125 * 25.31972 * 22 20 2 37 37 H 1.08993 * 110.25235 * 93.58186 * 23 22 20 38 38 H 1.09000 * 110.24807 * 215.50074 * 23 22 20 39 39 H 0.97005 * 124.34838 * 197.02504 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3547 1.1671 0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1580 3.5396 -0.1109 7 6 1.4532 4.7282 -0.2232 8 6 2.1737 5.9326 -0.3388 9 6 1.5041 7.1737 -0.4615 10 1 0.4670 7.2586 -0.1723 11 6 2.1864 8.2913 -0.9577 12 7 3.0893 8.1443 -1.8919 13 14 1.8066 9.9920 -0.2849 14 1 2.6586 10.9970 -0.9703 15 1 2.0843 10.0207 1.1736 16 1 0.3759 10.3103 -0.5230 17 6 3.5836 5.8657 -0.3228 18 6 4.1902 4.6478 -0.2029 19 7 3.4829 3.5370 -0.1016 20 6 2.1974 -1.2688 -0.0006 21 1 3.2722 -1.0877 -0.0130 22 6 1.8062 -2.1200 1.2295 23 6 1.8279 -3.5492 0.6434 24 7 1.5813 -3.3865 -0.7942 25 6 1.7893 -2.1152 -1.1862 26 8 1.6657 -1.7068 -2.3215 27 1 -0.3635 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 0.4980 2.3362 0.0760 31 1 0.3732 4.7300 -0.2257 32 1 3.2262 7.2760 -2.3018 33 1 4.1750 6.7657 -0.4040 34 1 5.2686 4.5921 -0.1898 35 1 2.5418 -2.0143 2.0270 36 1 0.8093 -1.8582 1.5840 37 1 2.8014 -4.0103 0.8093 38 1 1.0424 -4.1544 1.0960 39 1 1.3054 -4.1032 -1.3868 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871728174.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:41 Heat of formation + Delta-G solvation = -37.389156 kcal Electronic energy + Delta-G solvation = -24392.136732 eV Core-core repulsion = 20720.167061 eV Total energy + Delta-G solvation = -3671.969671 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.10584 -41.07725 -39.85309 -37.63095 -36.63293 -36.27500 -35.42544 -32.48326 -31.68060 -30.24150 -28.73084 -27.77094 -27.28868 -23.99662 -23.80134 -22.85689 -22.00322 -20.62056 -20.10918 -19.56604 -18.51270 -17.89350 -17.39755 -16.97987 -16.54904 -16.45299 -16.30950 -15.75017 -15.48439 -15.19793 -14.90109 -14.84468 -14.68320 -14.43544 -14.21630 -13.95920 -13.62064 -13.52755 -13.33677 -12.90090 -12.89531 -12.36508 -12.15248 -11.98140 -11.85180 -11.60140 -11.33897 -11.32515 -10.96802 -10.22671 -10.14662 -9.76478 -9.71346 -9.37414 -8.94883 -6.69051 0.68257 0.93866 1.05477 1.52888 1.64756 1.67910 1.83970 2.10037 2.29936 2.34513 2.66924 2.72521 3.32394 3.53184 3.59590 3.90025 3.95445 4.03809 4.09301 4.42485 4.44247 4.57234 4.67213 4.72075 4.75775 4.78565 4.87464 5.00483 5.04058 5.27397 5.34836 5.42544 5.48899 5.65415 5.71384 5.77351 5.92947 6.04351 6.23964 6.60257 6.67704 6.78191 7.14303 7.42955 7.78961 7.84168 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.037840 B = 0.002882 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.778247 B = 9713.403769 C = 9849.446598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.612 5.612 3 C 0.693 3.307 4 O -0.574 6.574 5 N -0.657 5.657 6 C 0.376 3.624 7 C -0.328 4.328 8 C 0.106 3.894 9 C -0.535 4.535 10 H 0.086 0.914 11 C 0.014 3.986 12 N -0.783 5.783 13 Si 1.117 2.883 14 H -0.271 1.271 15 H -0.263 1.263 16 H -0.251 1.251 17 C -0.302 4.302 18 C 0.124 3.876 19 N -0.590 5.590 20 C 0.116 3.884 21 H 0.110 0.890 22 C -0.133 4.133 23 C 0.105 3.895 24 N -0.714 5.714 25 C 0.503 3.497 26 O -0.576 6.576 27 H 0.048 0.952 28 H 0.111 0.889 29 H 0.086 0.914 30 H 0.421 0.579 31 H 0.120 0.880 32 H 0.285 0.715 33 H 0.102 0.898 34 H 0.141 0.859 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.679 -19.614 8.665 23.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.350 5.350 3 C 0.394 3.606 4 O -0.448 6.448 5 N -0.308 5.308 6 C 0.148 3.852 7 C -0.354 4.354 8 C 0.098 3.902 9 C -0.564 4.564 10 H 0.104 0.896 11 C -0.208 4.208 12 N -0.403 5.403 13 Si 0.933 3.067 14 H -0.195 1.195 15 H -0.188 1.188 16 H -0.175 1.175 17 C -0.326 4.326 18 C -0.027 4.027 19 N -0.310 5.310 20 C 0.008 3.992 21 H 0.128 0.872 22 C -0.172 4.172 23 C -0.018 4.018 24 N -0.370 5.370 25 C 0.288 3.712 26 O -0.455 6.455 27 H 0.067 0.933 28 H 0.130 0.870 29 H 0.105 0.895 30 H 0.261 0.739 31 H 0.138 0.862 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.158 0.842 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.140 0.860 39 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -6.917 -18.687 8.078 21.501 hybrid contribution -1.070 -1.060 -0.784 1.698 sum -7.988 -19.746 7.294 22.515 Atomic orbital electron populations 1.22047 0.77336 1.05517 1.02486 1.46758 1.07598 1.02731 1.77898 1.16160 0.85293 0.80981 0.78125 1.90969 1.12819 1.85567 1.55465 1.42543 1.10470 1.02510 1.75229 1.18053 0.89222 0.84214 0.93747 1.21137 0.99113 0.90742 1.24406 1.17898 0.91893 0.93007 0.87383 1.20801 1.00835 0.94574 1.40165 0.89590 1.28651 0.90669 1.09598 0.91834 1.70549 1.25777 1.29416 1.14528 0.83024 0.78383 0.68359 0.76947 1.19535 1.18763 1.17506 1.21672 0.95527 0.97868 1.17562 1.21827 0.98954 0.87591 0.94346 1.67374 1.06051 1.30784 1.26830 1.21717 0.99198 0.82680 0.95622 0.87243 1.23106 1.05564 0.92813 0.95680 1.22378 1.04813 0.96759 0.77849 1.46154 1.68470 1.09641 1.12702 1.21392 0.75873 0.84891 0.89087 1.90747 1.53764 1.77179 1.23813 0.93286 0.87032 0.89520 0.73907 0.86213 0.90296 0.87975 0.84197 0.87161 0.87443 0.88816 0.85977 0.73830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 9.49 127.77 1.21 2.49 16 2 N -0.61 -17.30 2.85 -840.67 -2.39 -19.69 16 3 C 0.69 27.69 8.24 179.05 1.48 29.17 16 4 O -0.57 -28.43 13.96 -3.96 -0.06 -28.48 16 5 N -0.66 -25.91 5.27 -322.37 -1.70 -27.61 16 6 C 0.38 18.61 7.42 132.76 0.98 19.60 16 7 C -0.33 -16.35 9.74 23.00 0.22 -16.12 16 8 C 0.11 5.75 5.40 -21.11 -0.11 5.63 16 9 C -0.54 -27.93 8.96 23.52 0.21 -27.72 16 10 H 0.09 4.27 8.04 -2.91 -0.02 4.25 16 11 C 0.01 0.68 4.78 85.29 0.41 1.09 16 12 N -0.78 -41.16 12.28 21.84 0.27 -40.89 16 13 Si 1.12 40.81 30.05 68.60 2.06 42.87 16 14 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 15 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 16 H -0.25 -8.24 7.11 99.48 0.71 -7.53 16 17 C -0.30 -16.31 8.26 22.60 0.19 -16.13 16 18 C 0.12 6.50 11.10 84.27 0.94 7.44 16 19 N -0.59 -31.94 7.86 -194.27 -1.53 -33.46 16 20 C 0.12 2.79 3.33 44.98 0.15 2.94 16 21 H 0.11 3.29 6.97 -2.38 -0.02 3.27 16 22 C -0.13 -1.43 6.70 31.65 0.21 -1.22 16 23 C 0.11 0.59 7.78 86.83 0.68 1.27 16 24 N -0.71 -9.47 6.25 -459.50 -2.87 -12.34 16 25 C 0.50 12.68 7.51 87.86 0.66 13.34 16 26 O -0.58 -21.23 18.02 -3.03 -0.05 -21.29 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.11 1.22 6.35 -2.38 -0.02 1.21 16 29 H 0.09 1.36 6.29 -2.38 -0.01 1.35 16 30 H 0.42 12.79 6.39 -92.71 -0.59 12.20 16 31 H 0.12 5.32 8.06 -2.91 -0.02 5.29 16 32 H 0.29 15.88 7.27 -92.71 -0.67 15.21 16 33 H 0.10 5.56 6.54 -2.91 -0.02 5.54 16 34 H 0.14 6.59 8.06 -2.91 -0.02 6.57 16 35 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.11 0.81 6.27 -2.39 -0.01 0.79 16 37 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 39 H 0.42 4.15 8.96 -92.70 -0.83 3.32 16 Total: -1.00 -83.75 328.34 0.75 -83.01 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -0.21 Total: 36.11 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 7.22 Total: 21.77 kcal Atomic # 7 Polarization: -125.77 SS G_CDS: -8.22 Total: -133.99 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -0.11 Total: -49.77 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.06 Total: 42.87 kcal Total: -83.75 0.75 -83.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871728174.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.618 kcal (2) G-P(sol) polarization free energy of solvation -83.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds