Wall clock time and date at job start Fri Apr 10 2020 14:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 119.99718 * 2 1 4 4 O 1.21576 * 119.99684 * 180.02562 * 3 2 1 5 5 N 1.34774 * 120.00314 * 0.02562 * 3 2 1 6 6 C 1.39247 * 119.99935 * 174.93834 * 5 3 2 7 7 C 1.39686 * 119.57214 * 185.47382 * 6 5 3 8 8 C 1.38654 * 119.49288 * 179.74775 * 7 6 5 9 9 C 1.38348 * 118.66715 * 0.51982 * 8 7 6 10 10 C 1.40569 * 119.13669 * 359.72024 * 9 8 7 11 11 C 1.41335 * 119.78946 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00169 * 0.02562 * 11 10 9 13 13 C 1.40026 * 120.00023 * 180.02562 * 11 10 9 14 14 N 1.30742 * 119.99997 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00055 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47071 * 89.99767 * 15 13 11 17 17 H 1.48501 * 109.47023 * 209.99747 * 15 13 11 18 18 H 1.48495 * 109.46981 * 329.99730 * 15 13 11 19 19 N 1.31900 * 119.57746 * 5.74545 * 6 5 3 20 20 C 1.46500 * 120.00176 * 180.02562 * 2 1 3 21 21 H 1.08992 * 110.43625 * 180.69573 * 20 2 1 22 22 C 1.54634 * 110.59878 * 58.07898 * 20 2 1 23 23 C 1.54486 * 101.76265 * 216.47038 * 22 20 2 24 24 N 1.46762 * 105.47334 * 25.41846 * 23 22 20 25 25 C 1.34421 * 111.30151 * 342.97978 * 24 23 22 26 26 O 1.21285 * 124.94244 * 180.37374 * 25 24 23 27 27 H 1.09001 * 109.47078 * 269.99463 * 1 2 3 28 28 H 1.08998 * 109.47545 * 29.99615 * 1 2 3 29 29 H 1.09005 * 109.47303 * 149.99847 * 1 2 3 30 30 H 0.96997 * 119.99980 * 354.94186 * 5 3 2 31 31 H 1.08001 * 120.25621 * 0.02562 * 7 6 5 32 32 H 1.08001 * 120.66269 * 180.24699 * 8 7 6 33 33 H 1.08007 * 120.43122 * 179.70712 * 9 8 7 34 34 H 0.97000 * 120.00296 * 180.02562 * 14 13 11 35 35 H 1.09003 * 110.96758 * 334.58680 * 22 20 2 36 36 H 1.08993 * 110.97063 * 98.34894 * 22 20 2 37 37 H 1.08995 * 110.24477 * 266.41449 * 23 22 20 38 38 H 1.09000 * 110.31525 * 144.45561 * 23 22 20 39 39 H 0.97000 * 124.34931 * 162.96835 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3545 1.1672 -0.0005 5 7 1.4649 2.3344 0.0005 6 6 2.1571 3.5379 0.1069 7 6 1.4457 4.7345 0.2222 8 6 2.1367 5.9315 0.3334 9 6 3.5198 5.9035 0.3155 10 6 4.1778 4.6675 0.1918 11 6 5.5903 4.6229 0.1726 12 1 6.1607 5.5365 0.2533 13 6 6.2504 3.3942 0.0490 14 7 5.5600 2.2881 -0.0481 15 14 8.1173 3.3351 0.0244 16 1 8.6262 3.1870 1.4116 17 1 8.5652 2.1792 -0.7933 18 1 8.6445 4.5921 -0.5647 19 7 3.4761 3.5339 0.0921 20 6 2.1975 -1.2687 -0.0006 21 1 3.2722 -1.0876 0.0119 22 6 1.8067 -2.1220 -1.2295 23 6 1.8316 -3.5505 -0.6419 24 7 1.5860 -3.3868 0.7958 25 6 1.7895 -2.1161 1.1843 26 8 1.6637 -1.7083 2.3196 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8900 -0.5139 30 1 0.4978 2.3360 -0.0732 31 1 0.3658 4.7270 0.2293 32 1 1.6058 6.8672 0.4275 33 1 4.0865 6.8195 0.3954 34 1 6.0172 1.4369 -0.1333 35 1 0.8087 -1.8628 -1.5829 36 1 2.5413 -2.0157 -2.0277 37 1 2.8059 -4.0099 -0.8082 38 1 1.0467 -4.1585 -1.0918 39 1 1.3118 -4.1034 1.3893 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881148795.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:52 Heat of formation + Delta-G solvation = 20.645370 kcal Electronic energy + Delta-G solvation = -25274.245876 eV Core-core repulsion = 21604.792771 eV Total energy + Delta-G solvation = -3669.453105 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.70690 -39.26096 -37.65954 -36.38251 -34.70257 -34.10778 -32.98525 -30.58355 -30.20975 -28.84050 -27.64848 -26.14210 -25.35540 -22.44837 -21.88051 -21.27270 -20.29044 -18.89767 -18.24755 -17.44632 -17.09540 -16.27419 -16.01083 -15.48786 -14.91817 -14.59581 -14.39925 -14.09964 -13.88282 -13.70083 -13.51778 -13.11909 -12.90350 -12.78111 -12.56079 -12.19963 -12.11670 -11.95243 -11.83254 -11.18415 -11.10210 -10.90165 -10.59555 -10.40889 -10.04936 -9.87548 -9.63751 -9.26816 -9.10269 -8.97458 -8.19384 -7.89791 -7.17146 -6.89755 -6.06028 -4.33481 2.42807 2.88609 3.04608 3.17004 3.20986 3.23472 3.32347 3.35042 4.07833 4.11578 4.25583 4.46687 4.55933 4.72923 4.85258 5.00654 5.10311 5.25943 5.40306 5.50390 5.73057 5.78781 5.85857 6.10460 6.14088 6.43190 6.55835 6.66917 6.83465 6.86230 6.88754 6.90922 7.23443 7.35226 7.66317 7.74804 7.86868 8.19102 8.22280 8.31886 8.62935 8.83847 9.11597 9.55117 10.32153 10.55118 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.005121 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.925691 B = 5465.992695 C = 6920.212437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.624 5.624 3 C 0.673 3.327 4 O -0.457 6.457 5 N -0.669 5.669 6 C 0.386 3.614 7 C -0.357 4.357 8 C -0.035 4.035 9 C -0.306 4.306 10 C 0.272 3.728 11 C -0.425 4.425 12 H 0.082 0.918 13 C 0.057 3.943 14 N -0.650 5.650 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.264 1.264 19 N -0.471 5.471 20 C 0.134 3.866 21 H 0.140 0.860 22 C -0.146 4.146 23 C 0.104 3.896 24 N -0.737 5.737 25 C 0.508 3.492 26 O -0.516 6.516 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.395 0.605 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.271 0.729 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.434 -12.966 -4.465 16.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.366 5.366 3 C 0.372 3.628 4 O -0.320 6.320 5 N -0.319 5.319 6 C 0.146 3.854 7 C -0.383 4.383 8 C -0.060 4.060 9 C -0.330 4.330 10 C 0.147 3.853 11 C -0.456 4.456 12 H 0.100 0.900 13 C -0.172 4.172 14 N -0.268 5.268 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.188 1.188 19 N -0.190 5.190 20 C 0.025 3.975 21 H 0.158 0.842 22 C -0.185 4.185 23 C -0.021 4.021 24 N -0.395 5.395 25 C 0.291 3.709 26 O -0.389 6.389 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.230 0.770 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -7.991 -13.671 -4.022 16.338 hybrid contribution -0.541 0.283 0.292 0.677 sum -8.533 -13.388 -3.730 16.308 Atomic orbital electron populations 1.21656 0.81014 1.02254 1.01579 1.46878 1.05390 1.03822 1.80545 1.16291 0.86424 0.79906 0.80132 1.91371 1.08358 1.83286 1.48979 1.42647 1.09131 1.03787 1.76295 1.18347 0.90985 0.82446 0.93602 1.20424 0.97424 0.92429 1.28028 1.20536 0.94084 0.95524 0.95823 1.21617 0.93868 0.98379 1.19090 1.18381 0.93461 0.85622 0.87862 1.19568 0.90090 0.93764 1.42172 0.90006 1.26184 0.99588 0.96019 0.95441 1.70348 1.35257 0.97771 1.23417 0.86543 0.84001 0.78710 0.78849 1.19714 1.20391 1.18799 1.68673 1.01777 1.28150 1.20350 1.21346 1.00912 0.83081 0.92157 0.84245 1.23052 1.04177 0.93046 0.98220 1.22045 1.01967 0.97774 0.80276 1.46159 1.71115 1.11203 1.10973 1.21366 0.76014 0.83275 0.90197 1.90766 1.50648 1.75859 1.21648 0.92942 0.91366 0.91527 0.76961 0.89190 0.88626 0.88599 0.91734 0.89477 0.88414 0.90765 0.90262 0.75358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 9.49 59.85 0.57 1.50 16 2 N -0.62 -10.09 2.85 -179.69 -0.51 -10.60 16 3 C 0.67 14.48 8.24 -86.92 -0.72 13.76 16 4 O -0.46 -11.88 11.47 5.30 0.06 -11.82 16 5 N -0.67 -13.98 5.26 -15.79 -0.08 -14.06 16 6 C 0.39 9.75 7.43 -155.00 -1.15 8.60 16 7 C -0.36 -8.25 9.96 -38.89 -0.39 -8.64 16 8 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 9 C -0.31 -7.89 9.83 -38.66 -0.38 -8.27 16 10 C 0.27 7.81 6.55 -85.00 -0.56 7.26 16 11 C -0.43 -11.95 9.14 -37.73 -0.34 -12.29 16 12 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 13 C 0.06 1.53 5.50 -17.35 -0.10 1.44 16 14 N -0.65 -18.33 8.99 55.55 0.50 -17.83 16 15 Si 0.89 19.61 29.56 -169.99 -5.02 14.58 16 16 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 19 N -0.47 -13.59 5.74 -10.26 -0.06 -13.65 16 20 C 0.13 1.92 3.34 -67.94 -0.23 1.69 16 21 H 0.14 2.36 6.97 -51.93 -0.36 2.00 16 22 C -0.15 -1.31 6.70 -25.09 -0.17 -1.48 16 23 C 0.10 0.70 7.78 -3.12 -0.02 0.68 16 24 N -0.74 -7.06 6.24 -59.20 -0.37 -7.43 16 25 C 0.51 7.43 7.49 -10.86 -0.08 7.35 16 26 O -0.52 -10.08 18.02 5.55 0.10 -9.98 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.71 6.29 -51.93 -0.33 0.38 16 29 H 0.07 0.60 6.35 -51.93 -0.33 0.27 16 30 H 0.40 6.52 6.39 -40.82 -0.26 6.26 16 31 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.10 2.29 8.06 -52.48 -0.42 1.86 16 34 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 35 H 0.09 0.69 6.28 -51.93 -0.33 0.37 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.41 3.18 8.96 -40.82 -0.37 2.81 16 LS Contribution 325.17 15.07 4.90 4.90 Total: -1.00 -37.06 325.17 -8.93 -45.99 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -4.48 Total: 9.52 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: -3.96 Total: 10.38 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -0.52 Total: -63.57 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: 0.16 Total: -21.80 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -37.06 -8.93 -45.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881148795.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.633 kcal (2) G-P(sol) polarization free energy of solvation -37.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds