Wall clock time and date at job start Fri Apr 10 2020 14:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 119.99718 * 2 1 4 4 O 1.21576 * 119.99684 * 180.02562 * 3 2 1 5 5 N 1.34774 * 120.00314 * 0.02562 * 3 2 1 6 6 C 1.39247 * 119.99935 * 174.93834 * 5 3 2 7 7 C 1.39686 * 119.57214 * 185.47382 * 6 5 3 8 8 C 1.38654 * 119.49288 * 179.74775 * 7 6 5 9 9 C 1.38348 * 118.66715 * 0.51982 * 8 7 6 10 10 C 1.40569 * 119.13669 * 359.72024 * 9 8 7 11 11 C 1.41335 * 119.78946 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00169 * 0.02562 * 11 10 9 13 13 C 1.40026 * 120.00023 * 180.02562 * 11 10 9 14 14 N 1.30742 * 119.99997 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00055 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47071 * 89.99767 * 15 13 11 17 17 H 1.48501 * 109.47023 * 209.99747 * 15 13 11 18 18 H 1.48495 * 109.46981 * 329.99730 * 15 13 11 19 19 N 1.31900 * 119.57746 * 5.74545 * 6 5 3 20 20 C 1.46500 * 120.00176 * 180.02562 * 2 1 3 21 21 H 1.08992 * 110.43625 * 180.69573 * 20 2 1 22 22 C 1.54634 * 110.59878 * 58.07898 * 20 2 1 23 23 C 1.54486 * 101.76265 * 216.47038 * 22 20 2 24 24 N 1.46762 * 105.47334 * 25.41846 * 23 22 20 25 25 C 1.34421 * 111.30151 * 342.97978 * 24 23 22 26 26 O 1.21285 * 124.94244 * 180.37374 * 25 24 23 27 27 H 1.09001 * 109.47078 * 269.99463 * 1 2 3 28 28 H 1.08998 * 109.47545 * 29.99615 * 1 2 3 29 29 H 1.09005 * 109.47303 * 149.99847 * 1 2 3 30 30 H 0.96997 * 119.99980 * 354.94186 * 5 3 2 31 31 H 1.08001 * 120.25621 * 0.02562 * 7 6 5 32 32 H 1.08001 * 120.66269 * 180.24699 * 8 7 6 33 33 H 1.08007 * 120.43122 * 179.70712 * 9 8 7 34 34 H 0.97000 * 120.00296 * 180.02562 * 14 13 11 35 35 H 1.09003 * 110.96758 * 334.58680 * 22 20 2 36 36 H 1.08993 * 110.97063 * 98.34894 * 22 20 2 37 37 H 1.08995 * 110.24477 * 266.41449 * 23 22 20 38 38 H 1.09000 * 110.31525 * 144.45561 * 23 22 20 39 39 H 0.97000 * 124.34931 * 162.96835 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3545 1.1672 -0.0005 5 7 1.4649 2.3344 0.0005 6 6 2.1571 3.5379 0.1069 7 6 1.4457 4.7345 0.2222 8 6 2.1367 5.9315 0.3334 9 6 3.5198 5.9035 0.3155 10 6 4.1778 4.6675 0.1918 11 6 5.5903 4.6229 0.1726 12 1 6.1607 5.5365 0.2533 13 6 6.2504 3.3942 0.0490 14 7 5.5600 2.2881 -0.0481 15 14 8.1173 3.3351 0.0244 16 1 8.6262 3.1870 1.4116 17 1 8.5652 2.1792 -0.7933 18 1 8.6445 4.5921 -0.5647 19 7 3.4761 3.5339 0.0921 20 6 2.1975 -1.2687 -0.0006 21 1 3.2722 -1.0876 0.0119 22 6 1.8067 -2.1220 -1.2295 23 6 1.8316 -3.5505 -0.6419 24 7 1.5860 -3.3868 0.7958 25 6 1.7895 -2.1161 1.1843 26 8 1.6637 -1.7083 2.3196 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8900 -0.5139 30 1 0.4978 2.3360 -0.0732 31 1 0.3658 4.7270 0.2293 32 1 1.6058 6.8672 0.4275 33 1 4.0865 6.8195 0.3954 34 1 6.0172 1.4369 -0.1333 35 1 0.8087 -1.8628 -1.5829 36 1 2.5413 -2.0157 -2.0277 37 1 2.8059 -4.0099 -0.8082 38 1 1.0467 -4.1585 -1.0918 39 1 1.3118 -4.1034 1.3893 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881148795.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:22:51 Heat of formation + Delta-G solvation = -7.376850 kcal Electronic energy + Delta-G solvation = -25275.461011 eV Core-core repulsion = 21604.792771 eV Total energy + Delta-G solvation = -3670.668240 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.132 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.89852 -40.81613 -39.43681 -37.53085 -36.05549 -35.92433 -34.85784 -32.20992 -31.66930 -30.53961 -28.64608 -27.61079 -27.01525 -24.02223 -23.18476 -22.78973 -21.71360 -20.34565 -19.87577 -18.78380 -18.45830 -17.95790 -17.11949 -16.83009 -16.48029 -16.26751 -16.09123 -15.60747 -15.28383 -14.93701 -14.78988 -14.67137 -14.47301 -14.07934 -13.74465 -13.69684 -13.43849 -13.20162 -12.88999 -12.84498 -12.70574 -12.53851 -12.29028 -12.08778 -11.74719 -11.54455 -11.22756 -10.87152 -10.85227 -10.11418 -9.88269 -9.49853 -9.10920 -8.78192 -8.00877 -6.39665 0.97136 1.21716 1.29350 1.39604 1.51743 1.54933 1.81309 2.27831 2.35883 2.52037 2.98360 3.03796 3.41705 3.62795 3.98409 4.06813 4.08745 4.19838 4.34249 4.52046 4.53656 4.71862 4.75754 4.80042 4.84585 4.97826 5.04315 5.06994 5.08849 5.28927 5.49714 5.67228 5.81614 5.83947 5.92395 5.97517 5.98100 6.24717 6.40759 6.82780 7.03080 7.11158 7.20623 7.91917 8.38474 8.60014 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.005121 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.925691 B = 5465.992695 C = 6920.212437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.618 5.618 3 C 0.662 3.338 4 O -0.510 6.510 5 N -0.659 5.659 6 C 0.362 3.638 7 C -0.346 4.346 8 C -0.033 4.033 9 C -0.330 4.330 10 C 0.237 3.763 11 C -0.466 4.466 12 H 0.086 0.914 13 C 0.009 3.991 14 N -0.685 5.685 15 Si 0.974 3.026 16 H -0.270 1.270 17 H -0.271 1.271 18 H -0.254 1.254 19 N -0.506 5.506 20 C 0.122 3.878 21 H 0.102 0.898 22 C -0.133 4.133 23 C 0.106 3.894 24 N -0.714 5.714 25 C 0.504 3.496 26 O -0.578 6.578 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.415 0.585 31 H 0.131 0.869 32 H 0.139 0.861 33 H 0.105 0.895 34 H 0.269 0.731 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.363 -14.299 -5.772 19.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.359 5.359 3 C 0.362 3.638 4 O -0.377 6.377 5 N -0.311 5.311 6 C 0.122 3.878 7 C -0.371 4.371 8 C -0.057 4.057 9 C -0.353 4.353 10 C 0.111 3.889 11 C -0.497 4.497 12 H 0.104 0.896 13 C -0.217 4.217 14 N -0.304 5.304 15 Si 0.795 3.205 16 H -0.195 1.195 17 H -0.196 1.196 18 H -0.177 1.177 19 N -0.225 5.225 20 C 0.013 3.987 21 H 0.120 0.880 22 C -0.171 4.171 23 C -0.017 4.017 24 N -0.370 5.370 25 C 0.288 3.712 26 O -0.456 6.456 27 H 0.062 0.938 28 H 0.103 0.897 29 H 0.122 0.878 30 H 0.254 0.746 31 H 0.149 0.851 32 H 0.157 0.843 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.141 0.859 39 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -10.017 -15.084 -5.373 18.887 hybrid contribution -0.150 0.657 0.688 0.963 sum -10.166 -14.426 -4.685 18.260 Atomic orbital electron populations 1.21923 0.78063 1.04966 1.01885 1.46812 1.07151 1.02772 1.79141 1.16616 0.86229 0.81157 0.79794 1.91353 1.10813 1.84377 1.51180 1.42509 1.09952 1.02734 1.75878 1.18875 0.90712 0.84670 0.93511 1.20903 0.99472 0.91501 1.25245 1.21021 0.93273 0.97459 0.93920 1.21810 0.95443 0.97797 1.20239 1.18889 0.94404 0.86931 0.88639 1.19902 0.90712 0.94661 1.44459 0.89590 1.27062 1.04814 0.95214 0.94587 1.70564 1.37155 0.98058 1.24646 0.85340 0.77218 0.79096 0.78824 1.19505 1.19596 1.17728 1.68640 1.03705 1.28791 1.21413 1.21545 0.98991 0.83083 0.95109 0.87978 1.23064 1.05258 0.92935 0.95854 1.22354 1.04598 0.96780 0.77972 1.46084 1.68663 1.09578 1.12641 1.21411 0.75733 0.84868 0.89198 1.90729 1.53785 1.77330 1.23797 0.93809 0.89699 0.87789 0.74583 0.85093 0.84343 0.87672 0.92071 0.87509 0.87792 0.89160 0.85928 0.73915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.60 9.49 127.77 1.21 2.82 16 2 N -0.62 -19.99 2.85 -840.67 -2.40 -22.39 16 3 C 0.66 29.43 8.24 179.06 1.48 30.91 16 4 O -0.51 -28.18 11.47 -3.96 -0.05 -28.23 16 5 N -0.66 -27.64 5.26 -322.13 -1.69 -29.33 16 6 C 0.36 18.50 7.43 133.26 0.99 19.49 16 7 C -0.35 -15.38 9.96 22.72 0.23 -15.15 16 8 C -0.03 -1.46 10.15 22.40 0.23 -1.24 16 9 C -0.33 -17.21 9.83 22.86 0.22 -16.98 16 10 C 0.24 14.19 6.55 40.19 0.26 14.45 16 11 C -0.47 -27.46 9.14 23.47 0.21 -27.24 16 12 H 0.09 4.73 7.85 -2.91 -0.02 4.70 16 13 C 0.01 0.50 5.50 85.29 0.47 0.96 16 14 N -0.69 -40.95 8.99 21.84 0.20 -40.75 16 15 Si 0.97 42.01 29.56 68.60 2.03 44.03 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 17 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 19 N -0.51 -30.41 5.74 -186.37 -1.07 -31.48 16 20 C 0.12 3.50 3.34 44.99 0.15 3.65 16 21 H 0.10 3.73 6.97 -2.39 -0.02 3.72 16 22 C -0.13 -2.02 6.70 31.66 0.21 -1.81 16 23 C 0.11 1.01 7.78 86.83 0.68 1.68 16 24 N -0.71 -12.00 6.24 -459.80 -2.87 -14.87 16 25 C 0.50 14.68 7.49 87.90 0.66 15.33 16 26 O -0.58 -23.38 18.02 -3.04 -0.05 -23.44 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.08 1.54 6.29 -2.39 -0.02 1.53 16 29 H 0.10 1.48 6.35 -2.38 -0.02 1.47 16 30 H 0.42 13.14 6.39 -92.71 -0.59 12.54 16 31 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 32 H 0.14 4.95 8.06 -2.91 -0.02 4.93 16 33 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 34 H 0.27 15.11 8.29 -92.71 -0.77 14.34 16 35 H 0.11 1.24 6.28 -2.39 -0.01 1.22 16 36 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.42 5.45 8.96 -92.71 -0.83 4.62 16 Total: -1.00 -88.98 325.17 0.79 -88.19 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: -0.30 Total: 31.40 kcal Atomic # 6 Polarization: 19.87 SS G_CDS: 7.00 Total: 26.87 kcal Atomic # 7 Polarization: -130.99 SS G_CDS: -7.83 Total: -138.82 kcal Atomic # 8 Polarization: -51.57 SS G_CDS: -0.10 Total: -51.67 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -88.98 0.79 -88.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881148795.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.810 kcal (2) G-P(sol) polarization free energy of solvation -88.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds